Ecological Fingerprint Research Articles

Climate Change and Wetland Ecosystems: The Effects on Halophilous Vegetation Diversity in Il-Ballut ta’ Marsaxlokk Natura 2000 Site (Malta)

Climate change poses a fundamental threat to the wetlands. The Mediterranean basin is a biodiversity hotspot, and wetlands are important for maintaining this status. The current study evaluated the halophilous vegetation diversity of one of the most relevant Maltese wetlands, Il-Ballut ta’ Marsaxlokk Natura 2000 site, also identified under the Water Framework Directive. A vegetation analysis was carried out according to the Braun–Blanquet approach. The processed dataset included both data from the literature and unpublished data. To quantify vegetation structure and diversity, a hierarchical classification (Chord distance; Ward linkage) and diversity and ecological indices were performed. Diachronic analysis of the taxonomic diversity indices and the Ellenberg indicator values were taken into account. We used an NMDS analysis to assess the ecological fingerprint of the vegetation. In addition, we provided an actual vegetation map for Il-Ballut ta’ Marsaxlokk, based on drone orthophotos. We identified five EU Directive habitats in the study area (1150*, 1310, 1410, 1420, and 92D0) of which one (1150*) was reported for the first time. The ecological fingerprint of the halophilous vegetation has undergone changes over time, particularly due to increasing temperatures. In fact, the results showed that nutrients and temperature were the strongest environmental drivers of the site. The results and methodology of this study demonstrate how vegetation studies can serve as tools to improve knowledge, management actions, and landscape planning of Natura 2000 sites.

A regionally coherent ecological fingerprint of climate change, evidenced from natural history collections.

Climate change has dramatic impacts on ecological systems, affecting a range of ecological factors including phenology, species abundance, diversity, and distribution. The breadth of climate change impacts on ecological systems leads to the occurrence of fingerprints of climate change. However, climate fingerprints are usually identified across broad geographical scales and are potentially influenced by publication biases. In this study, we used natural history collections spanning over 250 years, to quantify a range of ecological responses to climate change, including phenology, abundance, diversity, and distributions, across a range of taxa, including vertebrates, invertebrates, plants, and fungi, within a single region, Central Norway. We tested the hypotheses that ecological responses to climate change are apparent and coherent at a regional scale, that longer time series show stronger trends over time and in relation to temperature, and that ecological responses change in trajectory at the same time as shifts in temperature. We identified a clear regional coherence in climate signal, with decreasing abundances of limnic zooplankton (on average by 7691 individuals m-3°C-1) and boreal forest breeding birds (on average by 1.94 territories km-2°C-1), and earlier plant flowering phenology (on average 2 days °C-1) for every degree of temperature increase. In contrast, regional-scale species distributions and species diversity were largely stable. Surprisingly, the effect size of ecological response did not increase with study duration, and shifts in responses did not occur at the same time as shifts in temperature. This may be as the long-term studies include both periods of warming and temperature stability, and that ecological responses lag behind warming. Our findings demonstrate a regional climate fingerprint across a long timescale. We contend that natural history collections provide a unique window on a broad spectrum of ecological responses at timescales beyond most ecological monitoring programs. Natural history collections are thus an essential source for long-term ecological research.

‘Holey’ niche! finding holes in niche hypervolumes using persistence homology

Living organisms are limited in the range of values of ecological factors they can explore. This defines where animals exist (or could exist) and forms an ecological fingerprint that explains species’ distribution at global scales. Species’ ecological fingerprints can be represented as a n-dimensional hypervolume – known as Hutchinson’s niche hypervolume. This concept has enabled significant progress in our understanding of species’ ecological needs and distributions across environmental gradients. Nevertheless, the properties of Hutchinson’s n-dimensional hypervolumes can be challenging to calculate and several methods have been proposed to extract meaningful measurements of hypervolumes’ properties. One key property of hypervolumes are holes, which provide important information about the ecological occupancy of species. However, to date, current methods rely on volume estimates and set operations to identify holes in hypervolumes. Yet, this approach can be problematic because in high-dimensions, the volume of region enclosing a hole tends to zero. We propose the use of persistence homology (PH) to identify holes in hypervolumes and in ecological datasets more generally. PH allows for the estimates of topological properties in n-dimensional niche hypervolumes independent of the volume estimates of the hypervolume. We demonstrate the application of PH to canonical datasets and to the identification of holes in the hypervolumes of five vertebrate species with diverse niches, highlighting the potential benefits of this approach to gain further insights into animal ecology. Overall, our approach enables the study of a yet unexplored property of Hutchinson’s hypervolumes, and thus, have important implications to our understanding of animal ecology.

GIS-Based Assessment of the Chestnut Expansion Potential: A Case-Study on the Marvão Productive Area, Portugal

Sweet chestnut is a relevant species in Europe for the production of timber and fruit, alongside environmental effects such as biodiversity of protection against soil erosion. In Portugal, chestnut is cultivated mainly for fruit production, in two areas, in the North and the South of the country, with moderate water deficit and low slope and at altitudes higher than 500 m. The current area (845 ha) of the southern so-called Marvão Protected Designation of Origin, of a fortyfold lower order of magnitude by comparison with the Northern productive area, has a significant expansion potential, given its similarity with contiguous areas in the same region. In this context, the main objective of the present work was the evaluation through geographic information analysis of that expansive potential, by comparison of physiographic profiling of the current production area with contiguous areas. A GIS-based characterization of current and potential chestnut areas in Marvão is presented. The methodology involved (i) digital profiling of the main classes/values of the geographical spatial ecological fingerprint considering topography, soil and microclimate variables in the areas currently occupied with sweet chestnut stands and (ii) the evaluation of the distribution of that environmental fingerprint in the whole Marvão productive area, for extending the cultivation to contiguous areas with a similar ecological fingerprint. An enlarged 9889 ha chestnut area was proposed, allocated for high forest stands aiming at agroforestry fruit production and coppiced stands for timber production and environmental protection, corresponding to 4590 ha and 5299 ha, respectively. Fruit production was proposed to field slopes of 0–4% and 4–8%, and altitudes between 400 m and 500 m. Presumable high-quality sites allocated to temporary dry/irrigated cultivations were also proposed for fruit production, in the same slope classes and altitudes higher than 500 m. Timber production and environmental protection were proposed for slopes within 8−12% and >12% ranges. This selection took into account the logistical feasibility facilitated in lower slopes for intensive mechanized management operations. This methodology permits a future field evaluation of site indexes, productivity, and correlations between environmental variables and stand biometry.

Few-layer Black Phosphorous Catalyzes Radical Additions to Alkenes Faster than Low-valence Metals.

The substitution of catalytic metals by p‐block main elements has a tremendous impact not only in the fundamentals but also in the economic and ecological fingerprint of organic reactions. Here we show that few‐layer black phosphorous (FL‐BP), a recently discovered and now readily available 2D material, catalyzes different radical additions to alkenes with an initial turnover frequency (TOF0) up to two orders of magnitude higher than representative state‐of‐the‐art metal complex catalysts at room temperature. The corresponding electron‐rich BP intercalation compound (BPIC) KP6 shows a nearly twice TOF0 increase with respect to FL‐BP. This increase in catalytic activity respect to the neutral counterpart also occurs in other 2D materials (graphene vs. KC8) and metal complex catalysts (Fe0 vs. Fe2− carbon monoxide complexes). This reactive parallelism opens the door for cross‐fertilization between 2D materials and metal catalysts in organic synthesis.

Hematite‐coated microfossils: primary ecological fingerprint or taphonomic oddity of the Paleoproterozoic?

Microfossils belonging to the 1.88-billion-year-old 'Gunflint-biota' are preserved as carbonaceous and hematitic filaments and spheres that are believed to represent ancient chemolithoautotrophic Fe(II) oxidizing bacteria that grew above a chemocline where ferruginous seawater upwelled into shallow, oxygenated waters. This 'biological' model posits that hematite formed during burial from dewatering of the precursor ferric oxyhydroxides that encrusted Fe(II)-oxidizing bacteria. Here, we present an alternate 'taphonomic' model in which iron-rich groundwaters discharged into buried stromatolites; thus, the mineralization reactions are more informative of diagenetic processes than they are for primary marine conditions. We sampled centimeter-scale columnar stromatolites from both the lower and upper stromatolite horizons of the Biwabik and Gunflint formations, across a range of metamorphic gradients including unaltered to prehnite-pumpellyite taconite, supergene altered ore, and amphibolite-pyroxene grade contact-metamorphic zones. Fossils are rare to very rare and comprise curved filaments that exist in clusters with similar orientations. The filaments from throughout the Biwabik are similar to well-preserved carbonaceous Gunflintia from Ontario. Spheres of Huroniospora are also found in both formations. Microfossils from the least altered sections are preserved as carbon. Prehnite-pumpellyite samples are composed of either carbon or hematite (Fe2 O3 ). Within the contact aureole, filaments are densely coated by magnetite (Fe3 O4 ); the highest grade samples are secondarily oxidized to martite. The consistency in stromatolite microstructure and lithofacies throughout the metamorphic grades suggests they formed under similar environmental conditions. Post-depositional alteration led to replacement of the carbon by iron oxide. The facies association, filament distribution, and lack of branching and attached spherical cells argue against Gunflintia being a direct analogue to common marine, chemolithoautotrophic Fe(II)-oxidizing bacteria. Instead, we propose that the presence of hematite-coated microfossils is a reflection of taphonomic processes and does not necessarily reflect the byproduct of an original microbial ecosystem.

Ignoring discards biases the assessment of fisheries' ecological fingerprint

Understanding the pressures of fisheries on the ecosystem is crucial for effective management. Fishery removals, or catch, are composed of both landings and discards. However, the use of discards data in studies investigating the effect of the fishing pressures is sparse. Here, we explore the individual contribution of both these catch components to the overall pressure of fisheries on the ecosystem metrics. Using Irish observer data, we compare the linear relationship between several ecological metrics calculated for landings and discards with those of catch. Our results show that in fisheries with high discarding rates, discards can drive the fisheries' ecological fingerprint and highlight the need to rectify landings-based estimates to make them representative of those of catch in order to gain a robust picture of the impact of fisheries.

The Environmental Fingerprint. A Case Study

.  The new concept of ”ecological fingerprint” is approached in this paper, together with a case study concerning the ”carbon fingerprint”. The scientific bases of this concept were elaborated by Rees and Wackernagel, at University of Columbia in early ‘90s. Their overall significance last in the ability of our planet to produce all resources needed for a healthy food, goods, and services supplies, in order to satisfy the consumption needs of population, and also to absorb the waste produced by the earth population and their activities. Thus, the concerned resources, consumptions, waste, etc. are transformed into a single variable. The basis of this approach is represented by the ratio between the human consumption of natural resources and the global capacity of earth to regenerate natural resources. The ”global hectares” represents the measure unit for the ecological fingerprint, and it has four components. These four components of the ecological fingerprint are represented by: the carbon fingerprint, the food fingerprint, the housing fingerprint, and the goods and services fingerprint.

Ecological fingerprinting of ecosystem succession: Estimating secondary tropical dry forest structure and diversity using imaging spectroscopy

We evaluated the use of EO-1 Hyperion hyperspectral satellite imagery for mapping structure and floristic diversity in a Neotropical tropical dry forest as a way of assessing a region's ecological fingerprint. Analysis of satellite imagery provides a means to spatially appraise the dynamics of the structure and diversity of the forest. We derived optimal models for mapping canopy height, live aboveground biomass, Shannon diversity, basal area and the Holdridge Complexity Index from a dry season image. None of the evaluated models adequately estimated stem or species density. Due to the dynamic nature of the leaf phenology we found that for the application of remote sensing in Neotropical dry forests, the spectro-temporal domain (changes in the spectral signatures over time–season) must be taken into account when choosing imagery. The analyses and results presented here provide a means for rapid spatial assessment of structure and diversity characteristics from the microscale site level to an entire region.

Eco-efficiency analysis of textile coating materials

Eco-efficiency is critical for organisations that seek to be both environmentally conscious and profitable. It helps to “produce more out of less” to avoid wasting natural resources and to reduce emissions and damage to the environment. The textile coating and laminating industry, utilising solvent or water-based polymeric mixtures, is one of the industries coming under extreme environmental pressure to replace traditional procedures and use eco-efficient coating agents. In this study, eco-efficiency analysis was used to compare the eco-effectiveness of two different coating agents, polyacrylate and polyurethane, each in organic solution as well as aqueous dispersion forms. The “ecological fingerprint” and eco-efficiency portfolio were graphically illustrated for these coating agents based on the customer benefit, defined as coating one square meter of a textile fabric in a conventional laminating unit. According to the analysis results, polyacrylate dispersion in water was the most eco-efficient coating agent whilst polyurethane resin dissolved in organic solvent was found as the coating agent with the least acceptability as an eco-efficient product.

OprF polymorphism as a marker of ecological niche in Pseudomonas

OprF is the major outer-membrane protein of Pseudomonas sensu stricto (rRNA group I). In addition to playing a role as porin, membrane structural protein and root adhesion, this pleiotropic protein shows a length polymorphism corresponding to two types of OprF, termed OprF type 1 and OprF type 2. In a previous work, all the P. fluorescens isolated from bulk soil (non-rhizospheric) were shown to possess oprF type 1, while all the clinical P. fluorescens isolates and most rhizospheric strains corresponded to type 2. In this study, we further investigated the relation between the OprF polymorphism and the ecological niche by developing a culture-independent approach (a ratio polymerase chain reaction) to measure the percentage of each oprF type in environmental DNA samples, including two different soils and three different cultured plants (flax, wheat and grassland). Although the proportions of oprF type 2 between rhizospheric samples were quite variable, they were always very significantly higher (P<0.001) than the proportions of oprF type 2 of the adjacent bulk soil where the vast majority of oprF (>95%) corresponded to type 1. We discuss the potential applications of this ecological fingerprint in an agronomic and taxonomic point of view.

Cleaner production and methodological proposal of eco-efficiency measurement in a Mexican petrochemical complex

Abstract In the frame of the Petróleos Mexicanos Institutional Program for Sustainable Development, processes were evaluated in the manufacture operation of the petrochemical industry, with the purpose of reducing their ecological fingerprint. Thirteen cleaner production opportunities were registered in six process plants: ethylene oxide and glycols, acetaldehyde, ethylene, high density polyethylene, polypropylene switch and acrylonitrile, and 45 recommendations in the waste water treatment plant. Morelos is the second most important petrochemical complex in the Mexican and Latin American petrochemical industry. A tool was developed to obtain eco-efficiency indicators in operation processes, and as a result, potential savings were obtained based on best performance, as well as the integrated distribution of Sankey diagrams. Likewise, a mechanism of calculation to obtain economic savings based on the reduction of residues during the whole productive process is proposed. These improvement opportunities and recommendations will result in economic and environmental benefits minimising the use of water, efficient use of energy, raw materials and reducing residues from source, generating less environmental impacts during the process.

Molecular evolution of the major outer-membrane protein gene (oprF) of Pseudomonas

The major outer-membrane protein of Pseudomonas, OprF, is multifunctional. It is a non-specific porin that plays a role in maintenance of cell shape, in growth in a low-osmolarity environment, and in adhesion to various supports or molecules. OprF has been studied extensively for its utility as a vaccine component, its role in antimicrobial drug resistance, and its porin function. The authors have previously shown important differences between the OprF and 16S rDNA phylogenies: Pseudomonas fluorescens isolates split into two quite separate clusters, probably according to their ecological niche. In this study, the evolutionary history of the oprF gene was investigated further. The study of G+C content at the third codon position, synonymous codon usage (codon adaptation index, CAI) and genomic context showed no evidence of horizontal transfer or gene duplication. Similarly, a robust likelihood test of incongruence showed no significant incongruence between the oprF phylogeny and the species phylogeny. In addition, the ratio of nonsynonymous mutations to synonymous mutations (K(a)/K(s)) is high between the different clusters, especially between the two clusters containing P. fluorescens isolates, highlighting important modifications in evolutionary constraints during the history of the oprF gene. Since OprF is known as a pleiotropic protein, modifications in evolutionary constraints could have resulted from variations in cryptic functions, correlated with the ecological fingerprint. Finally, relaxed constraints and/or episodic positive evolution, especially for some P. fluorescens strains, could have led to a phylogeny reconstruction artifact.

Coherent Sign Switching in Multiyear Trends of Microbial Plankton

Since the 1990s, phytoplankton biomass on the continental shelf of Nova Scotia and in the Labrador Sea has undergone sustained changes in the spring and fall, which are accompanied by changes in bacterioplankton that are dampened in amplitude but coherent in the direction of change. A reversal of trend in biomass change, so-called sign switching, occurs both in time and in space. Thus, whenever (spring or fall) and wherever (Scotian Shelf or Labrador Sea) phytoplankton increase or decrease, so also does bacterioplankton. This tandem sign switch indicates coupling of the trophic levels at a multiyear time scale and contributes to an ecological fingerprint of systemwide forcing.

Assessing the Environmental-Hazard Potential for Life Cycle Assessment, Eco-Efficiency and SEEbalance (8 pp)

BASF has developed the eco-efficiency analysis tool to address not only strategic issues but also issues posed by the marketplace, politics and research. The goal was to develop a tool for supporting decision-making processes, which is useful for many of applications in the Chemical and other industries. A part of the eco-efficiency analysis involves the evaluation of the toxicity and the eco-toxicity potential. Many life cycle analyses do not include an assessment of the toxicity potential nor the eco-toxicity potential. However, in order to arrive at a comprehensive assessment of products and processes, it is often the eco-toxicity potential, which constitutes an important factor with regard to the evaluation of sustainability. The cradle-to-grave approach is also important for this calculation and will be done based on a database that will be discussed also in this paper. The method used for the determination of the eco-toxicity potential follows the basic rules of the European Union Risk Ranking System (EURAM). The other criteria of the ecological fingerprint are combined with the economical results in the eco-efficiency portfolio. The results of the studies are shown in a simple diagram, the eco-efficiency portfolio. Therefore ecological data are summarized in a special manner as described previously. It has been shown that the weighting factors, which are used in our method, have a negligible impact on the results. In most cases, the input data have the dominant impact on the results of the study. The eco-toxicity assessment will be a part of the ecological calculation. Because of the cradle-to-grave approach, substances of the whole life cycle can be identified that might have a toxic impact to the environment. The results can be used for optimization of the process. The new calculation model allows the assessment of eco-toxicological substances in an appropriate and easy way. In most of the cases the data from a European safety data sheet are sufficient for the calculation. The normalized data can be incorporated very easily in the ecological fingerprint and in the drawing of the eco-efficiency portfolio. LCA in combination with the evaluation of the eco-toxicity potential will for reasons of optimizing for least impact become more important in certain cases. Especially in those systems where water emissions are likely, the use of the evaluation system in the eco-efficiency analysis is recommended. This new methodology allows the calculation of eco-toxicity potentials in a short time with a small set of input information. The analytical eco-efficiency tool helps in implementing more sustainable processes and products in the future.