River discharge into the sea and its implications on the environmental setting and fauna in the nearshore represent the intricate interactions among the atmosphere, hydrosphere, lithosphere, and biosphere. This study, based on in-situ and satellite data, presents how spatially varying river discharge laden with suspended sediments structure the hydrography and the nearshore benthic environment over a 590 km southwest (Kerala) coast of India. The 41 rivers that discharge along the Kerala coast are monsoon-driven; they are small but swift and cumulatively supply huge amounts of freshwater and suspended sediments into the Southeastern Arabian Sea (SEAS) during the Southwest Monsoon (SWM) when around 70 % (1925 mm) of the yearly rainfall occurs. These rivers are distributed unevenly along the coastline, with twenty-four of them discharging in the northern region (10.9–12.5°N), nine in the central (9.2–10.9°N), and eight in the south (8–9.2°N). During the SWM, plumes of low salinity (<32) with high clay content were widespread in the northern and central regions of the study area due to heavy river discharge and the presence of crystalline rocks and laterite deposits. In contrast, the low salinity plumes and suspended sediments were markedly low in the southern region due to limited river discharge and a predominance of sedimentary rocks and coastal alluvium that supported sandy sediments. This resulted in a spatial change in benthic sediment texture as well, with the central and northern regions more silty or clayey, while the south was sandy. Interestingly, the sandy south section had a noticeably higher faunal abundance than the rest of the region with an increased abundance of sensitive fauna of molluscs and echinoderms. This is a clear case of how spatially varying river discharge and sediment flux impact the nearshore environment and fauna.