Understanding how ocean currents influence larval dispersal and measuring its magnitude is critical for conservation and sustainable exploitation, especially in the Tropical Eastern Pacific (TEP), where the larval transport of rocky reef fish remains untested. For this reason, a lagrangian simulation model was implemented to estimate larval transport pathways in Northwestern Mexico and TEP. Particle trajectories were simulated with data from the Hybrid Ocean Coordinate Model, focusing on three simulation scenarios: (1) using the occurrence records of Lutjanus peru and L. argentiventris as release sites; (2) considering a continuous distribution along the study area, and (3) taking the reproduction seasonality into account in both species. It was found that the continuous distribution scenario largely explained the genetic structure previously found in both species (genetic brakes between central and southern Mexico and Central America), confirming that the ocean currents play a significant role as predictors of genetic differentiation and gene flow in Northwestern Mexico and the TEP. Due to the oceanography of the area, the southern localities supply larvae from the northern localities; therefore, disturbances in any southern localities could affect the surrounding areas and have impacts that spread beyond their political boundaries.