Early Rice Growth Research Articles

Partial Substitution of Nitrogen Fertilizer with Biogas Slurry Increases Rice Yield and Fertilizer Utilization Efficiency, Enhancing Soil Fertility in the Chaohu Lake Basin.

To investigate the effects of biogas slurry substitution for fertilizer on rice yield, fertilizer utilization efficiency, and soil fertility, a field experiment was conducted on rice-wheat rotation soil in the Chaohu Lake Basin for two consecutive years, with the following six treatments: no fertilization (CK), conventional fertilization (CF), optimized fertilization (OF), biogas slurry replacing 15% of fertilizer (15% OFB), biogas slurry replacing 30% of fertilizer (30% OFB), and biogas slurry replacing 50% of fertilizer (50% OFB). The field experiment results showed that, compared with CF treatment, OF treatment in 2022 and 2023 significantly increased (p < 0.05) rice yield, promoted the uptake of nitrogen (N), phosphorus (P), and potassium (K) by grains and straws, improved fertilizer utilization efficiency, and increased the contents of soil organic C (SOC), NH4+-N, NO3--N, hydrolysable N, and available P. The 15% OFB and 30% OFB treatments significantly increased (p < 0.05) rice grain and straw yields compared with CF treatment, and rice grain and straw yields were the highest in the 30% OFB treatment. Compared with CF and OF treatments, 30% OFB treatment significantly increased (p < 0.05) the N, P, and K uptake of grains and straws and increased the fertilizer utilization efficiency. Compared with CF treatment, the grain yield of 50% OFB treatment was significantly decreased (p < 0.05) in 2022, and there was no significant difference in 2023, which may be because the biogas slurry was applied before planting in 2023 to provide more nutrients for early rice growth. Compared with CF treatment, 30% OFB treatment significantly increased (p < 0.05) the contents of SOC, NH4+-N, available K, and hydrolysable N. In summary, optimizing N and K topdressing methods can increase rice yield and improve the fertilizer utilization efficiency and soil fertility. The 30% OFB treatment resulted in the highest rice yield, fertilizer utilization efficiency, and improved soil fertility, indicating that biogas slurry replacing 30% of fertilizer was the best application mode for rice in this region.

Alternating wet and dry irrigation cycles enhance the nitrogen “cache” function of duckweed in a rice-duckweed system

In continuously-flooded paddies, the small, fast-growing aquatic plant duckweed (Lemna minor L.) considered to compete with rice for nitrogen, thereby having a negative impact on early rice growth. While duckweed overpopulation was known can be effectively overcome through field water management, the influence of such management on the N fate and its use efficiency in rice-duckweed systems is poorly documented. Accordingly, a three-year (2020–2022) field experiment was conducted to examine the combined impact on rice yield, as well as N loss and utilization, of two water management approaches (flood irrigation, FI vs. alternate wetting and drying irrigation, AWD), factorially combined with two rice production systems (rice-duckweed, +D, vs. duckweed-free rice, -D). In AWD+D fields, the density of duckweed generally remained below 250 g m−2 (about 85 % coverage), whereas in FI+D fields it reached 100 % coverage (300 g m−2) within 5 days after transplanting, with individual duckweeds overlapping one another. Following AWD irrigation, duckweed performed as a nitrogen “cache,” akin to a split fertilizer application, with the first of several splits occurring at the rice crop's early tillering stage. Within the first 2 days of a specific wet-dry cycle, duckweed can store 0.5–1.5 g N m−2, and then, within a further 3 days, release 0.3–1.0 g N m−2. In contrast, in FI+D paddies, this caching function occurred once under mid-season drainage, with further N being stored in the duckweeds during the remaining rice production season. As a result, at harvest the 0–0.10 m soil layer's N level increased significantly (p<0.05) in both FI+D (8.5–16.8 %) and AWD+D (14.9–20.8 %) compared to FI-D and AWD-D, respectively. Due to the coverage and storage-release function of duckweed, apparent N loss decreased in rice-duckweed system by 1.4–12.5 % in the FI field and 22.1–31.3 % in the AWD field compared to their respective duckweed-free systems. In FI fields, except for a 10 % relative reduction in nitrogen recovery efficiency (NRE) in 2020, duckweed didn't significantly affect rice yield or NRE. The yield reduction (3.5–6.7 %) and the NRE increase (0.8–7.4 %) under AWD-D (vs. FI-D) was, in the presence of duckweed, compensated for and overrun, resulting in a greater yield (5.3–6.7 %) and NRE (5.4–28.9 %) in the AWD+D vs. AWD-D field. When duckweed was present, AWD irrigation improved the by-path nitrogen cycling through duckweed, making the AWD+D system more beneficial for rice cultivation and the agroecosystem's environment health. The AWD+D system offers a promising measure for building an efficient and sustainable rice-duckweed agroecosystem.

Diversity of Fast-Growth Spore-Forming Microbes and Their Activity as Plant Partners.

Biofertilizers are agricultural materials capable of reducing the usage amounts of chemical fertilizers. Spore-forming microorganisms (SFM) could be used for plant growth promotion or to improve plant health. Until now, biofertilizers based on SFM have been applied for rice and other crops. In this study, we isolated and characterized SFM, which were colonized on the Oryza sativa L. roots. SFM were analyzed regarding the short-term effects of biofertilization on the nursery growths. Analysis was performed without nitrogen or any inorganic fertilizer and was divided into two groups, including bacteria and fungi. SF-bacteria were dominated by the Firmicutes group, including species from Viridibacillus, Lysinibacillus, Solibacillus, Paenibacillus, Priestia, and mainly Bacillus (50%). The fungi group was classified as Mucoromycota, Basidiomycota, and mainly Ascomycota (80%), with a predominance of Penicillium and Trichoderma species. In plant performance in comparison with B. pumilus TUAT1, some bacteria and fungus isolates significantly improved the early growth of rice, based on 48 h inoculum with 107 CFU mL-1. Furthermore, several SFM showed positive physiological responses under abiotic stress or with limited nutrients such as phosphorous (P). Moreover, the metabolic fingerprint was obtained. The biofertilizer based on SFM could significantly reduce the application of the inorganic fertilizer and improve the lodging resistances of rice, interactively enhancing better plant health and crop production.

The Role of Trichoderma in The Early Growth of Rice and Soybean in Saline Soils

Optimizing the use of marginal saline soils to improve food security requires solutions that involve exploiting local potential resources, including the use of biological agents. This research aims to determine the ability of Trichoderma sp. Tc-31 and Aspergillus sp. As-27 to overcome salinity stress in rice and soybean seedlings. Both isolates were tested for their ability to grow in vitro in saline soil. Next, the ability to overcome saline soil stress during germination and initial growth of rice and soybean seedlings was tested. The experiment consisted of three types of treatment, namely the use of As-27, Tc-31, and the use of husks treated with complete basic fertilizer. The average inhibitory power of saline soil against As-27 and Tc-31 was (-)62.50±16.68% and (-) 52±3.54% respectively at 48 days of incubation. The application of biological agents had an effect on germination in rice 94.10-94.46% and soybeans 74.49-77.04%. Biological agents also influence the height growth of rice and soybean seedlings. These two fungal isolates have the potential to be used as biological agents to help rice and soybean seeds overcome salinity stress.

Interaction of lime application and straw retention on ammonia emissions from a double-cropped rice field

Ammonia (NH3) emissions are an important pathway of nitrogen (N) losses in rice paddies. Lime application and straw retention are common practices to enhance soil fertility in acidic soils. However, the interaction of lime and straw application on NH3 emissions from paddies remain unclear. Here, a factorial experiment was employed to examine the interactive effects of slaked lime (i.e., Ca(OH)2) and straw retention on NH3 emissions and NH3 emission factors (EFs) in a double-cropped rice field. The results showed that compared to unlimed treatments, liming promoted NH3 emissions and EFs by 98.6% and 90.2% in the early rice growth season, respectively, with increases of 16.3% and 15.7% in the late rice growth season. Relative to straw removal, straw retention increased NH3 emissions by 52.8% in the early rice growth season but did not alter EFs, while reducing NH3 emissions by 9.9% and EFs by 25.7% in the late rice growth season. Liming interacted with straw retention to increase NH3 emissions and EFs in the early rice growth season. Under straw retention, liming promoted NH3 emissions by 147.7% and EFs by 148.3%, whereas liming raised NH3 emissions and EFs only by 45.3% and 45.5% under straw removal, respectively. Liming had no significant interactions with straw retention on NH3 emissions and EFs in the late rice growth season. It is likely that the decomposition extent of straw can alter the response of NH3 emissions to liming. Thus, NH3 emission inventories should take into account the interaction of liming and straw retention and its dependence on rice growth seasons in double-cropped rice systems with acidic soils.

Effect of Different Fertilization Treatments on Methane and Nitrous Oxide Emissions from Rice-Vegetable Rotation in a Tropical Region, China

The study of the effects of different fertilization treatments on soil methane (CH4) and nitrous oxide (N2O) emissions in rice-vegetable rotation systems is of great significance to supplement the research gap on greenhouse gas emissions in tropical regions of China. In this study, four fertilization treatments were set up during the pepper season:phosphorus and potassium fertilizer application (PK); nitrogen, phosphorus, and potassium (NPK) application; half application of nitrogen, phosphorus, and potassium plus half application of organic fertilizer (NPK+M); and application of organic fertilizer (M). There was no fertilizer application during the following early rice season. The objective of our study was to investigate the rules of CH4 and N2O emissions under different fertilization treatments in the pepper growth season, and the effects of different fertilization treatments in the pepper growth season on rice yield, and CH4 and N2O emissions in the following early rice growth season. The close static chamber-gas chromatography method was applied to determine soil CH4 and N2O emissions. We measured crop yield, estimated global warming potential (GWP), and calculated greenhouse gas emission intensity (GHGI). Our results showed that:① the cumulative CH4 emission under the four fertilization treatments ranged between 0.9 kg·hm-2 to 2.7 kg·hm-2 during the pepper growth season and between 5.5 kg·hm-2 to 8.4 kg·hm-2 during the early rice growth season. Compared with NPK, NPK+M and M reduced the cumulative CH4 emission in the pepper growth season by 35.3% and 7.6%, respectively; however, NPK+M and M increased the cumulative CH4 emission in the early rice season by 37.5% and 55.1%, respectively. There was a significant difference in cumulative CH4 emission between M and NPK in the early rice growth season. ② The cumulative N2O emission under the four fertilization treatments varied from 0.5 kg·hm-2 to 3.0 kg·hm-2 in the pepper growth season and from 0.3 kg·hm-2 to 0.5 kg·hm-2 in the early rice growth season. The cumulative N2O emission was significantly decreased by 33.7% in NPK+M and by 16.0% in M, compared with that in NPK. In the early rice growth season, the cumulative N2O emission was decreased by 23.5% by NPK+M but was increased by 9.1% by M. There was no significant difference in the cumulative N2O emission among the four fertilization treatments. ③ The yields of pepper and early rice under the four fertilization treatments were 3055.6-37722.5 kg·hm-2 and 5850.9-6994.4 kg·hm-2, respectively. Compared with that in NPK, NPK+M and M significantly increased pepper yield. The GWP under the four fertilization treatments in the pepper-early rice rotation system varied from 508.0 kg·hm-2 to 1864.4 kg·hm-2. Compared with NPK, NPK+M significantly decreased GWP by 25.7% and M insignificantly decreased GWP by 5.7%. The pepper growth season with the four fertilization treatments contributed to 69.2%-78.1% of the total GWP, and N2O contributed to 77.3%-85.3% of the total GWP. The GHGI ranged between 0.03 kg·kg-1 and 0.09 kg·kg-1 in the pepper growth season and between 0.04 kg·kg-1 and 0.24 kg·kg-1 in the early rice growth season. Compared with that in NPK, both M and NPK+M significantly reduced the GHGI by 71.5% and 54.7%, respectively, in the pepper growth season. In the early rice season, NPK+M significantly decreased the GHGI by 44.0%, but M non-significantly decreased the GHGI by 20.8%. The peak in N2O emission in the tropical pepper-early rice rotation system appeared after fertilization, and N2O emissions primarily occurred in the pepper growth season. However, CH4 emission was mainly concentrated in the early rice season. Considering the overall enhancing effects on crop yield and mitigation of greenhouse gas emissions, the co-application of chemical and organic fertilizers (NPK+M) can be recommended as an optimal fertilization practice to mitigate greenhouse gas emissions and maintain crop yield in pepper-rice rotation systems of Hainan, China.

Estimating rice yield by assimilating UAV-derived plant nitrogen concentration into the DSSAT model: Evaluation at different assimilation time windows

Accurately simulating crop growth and estimating yield play a paramount role in policy decision making and agriculture management. To improve the accuracy of rice yield estimation at the field scale, plant nitrogen concentration (PNC), a highly nitrogen-related variable, was derived from the UAV-based imagery through a two-year rice experiment by using the random forest (RF) algorithm; then the PNC data was assimilated into the CERES-Rice model with a particle swarm optimization (PSO) method. In this study, the sensitivity of assimilation process to the acquisition time of UAV remotely sensed PNC data, including the vegetative stage, heading stage, ripening stage and the whole growth stage, was investigated. The results showed that the relationship between the estimated and measured PNC after data assimilation at the vegetative stage was stronger than that at other growth stages. Moreover, assimilating PNC at the early growth stage could better simulate the dynamics of PNC with no nitrogen (N) stress. Due to the assumption of soil homogeneity under various N fertilization treatments, all data assimilation strategies had the tendency to overestimate PNC in the N stress condition. In addition, the accuracy of yield estimation obtained by assimilating PNC at the vegetative stage was the highest. Accordingly, the assimilation of PNC data at the early rice growth stage could provide a great potential for improving yield estimation.

Biofertilizer with Bacillus pumilus TUAT1 Spores Improves Growth, Productivity, and Lodging Resistance in Forage Rice

Bacillus pumilus strain TUAT1 is a plant growth-promoting bacterium (PGPB) applied as a biofertilizer, containing its spores, for rice. In this study, we analyzed the short-term effects of biofertilization on plant growth in the nursery and long-term effects on plant vegetative growth, yield, and lodging resistance in paddy fields using animal feed rice (‘Fukuhibiki’ and line LTAT-29 which was recently officially registered as a cultivar ‘Monster Nokodai 1′) and fodder rice (line TAT-26). The effects of the biofertilization were analyzed under two nitrogen treatments and at two transplanting distances in the field. The application of 107 colony forming units (CFU) mL−1 bacterial spore solution to seeds on plant box significantly improved the initial growth of rice. The biofertilizer treatment with this strain at 107 CFU g−1 onto seeds in nursery boxes increased the nitrogen uptake at the early growth of rice in the field, resulting in higher growth at the late vegetative growth stage (e.g., tiller number and plant height). Furthermore, the improvement of growth led to increases of not only yield components such as the total panicle number (TPN) and the number of spikelets in a panicle (NSP) in LTAT-29 but also the straw yield and quality of TAT-26. The lodging resistances of these forage rice plants were also improved due to the increased root development and photosynthesis creating tougher culms.

Comprehensive effects of integrated management on reducing nitrogen and phosphorus loss under legume-rice rotations

Paddy fields-based cropping systems are usually located in areas with dense water networks, so nitrogen (N) and phosphorus (P) losses from rice paddy fields caused by runoff might pose a serious pollution risk to their surrounding water bodies. However, current research over establishing a low fertilizer input paddy-based cropping system with comprehensive management for reducing runoff losses of N and P is insufficient. A five-year field trial was carried out with a rice-fava planting system in the Erhai Lake watershed from 2015 to 2019. Three treatments were designed namely chemical fertilizer plus manure (CMF), reduced chemical fertilizer combined with manure at the same application rate under CMF treatment (RF), and returning straw plus chemical and organic fertilizers at the same rate with RF treatment (RFS). The mean annual runoff losses of total N (TN) and total P (TP) range from 0.99 to 1.39 kg ha −1 yr −1 and 0.09–0.12 kg ha −1 yr −1 . Compared with CMF treatment, RF had lower runoff losses of TN and TP by 20.86% and 23.05%, respectively, but the yields and soil fertility were also reduced. After returning straw, soil organic carbon (SOC), TN, and crop yields were maintained or even increased, and runoff losses of TN and TP were further reduced by 9.48% and 7.41%, respectively, compared with RF. Therefore, the runoff losses of N and P decreased by selecting the rice-fava rotation system and reducing chemical fertilizer input through manure application and straw returning, which greatly reduced the surplus N and P in this system. Moreover, the temporal variation in the concentration of TN and TP, along with the N:P ratio approved the existence of potential risk caused by TN and TP losses to the watershed in the early stage of rice growth. Overall, in addition to taking field measures to reduce the N and P runoff losses from paddy fields, the runoff water with high N and P concentrations in early rice growth stage cannot be ignored. • Rice-fava system with low fertilizer maintained yield and had low environment risk. • Straw returning ensured crop yields under substituting chemical fertilizer by manure. • Combined of straw returning and manure substitution reduced nutrient runoff loss. • Runoff N/P concentration and N:P ratio in early stage of rice may need interception.

Long-Term Effects of Biochar Application With Reduced Chemical Fertilizer on Paddy Soil Properties and japonica Rice Production System

To clarify the effects of co-application of rice-straw biochar and different chemical fertilizer doses on paddy soil properties and japonica rice production in Northeast China, a located-field experiment was adopted for 5 years. The treatments included fertilization (F, no biochar, control) and rice-straw biochar (7.5 t ha−1) combined with different chemical fertilizer doses (100, 80, and 60% that of F) set as CF, CF1, and CF2, respectively. The results showed that the co-application of biochar and chemical fertilizers after 5 years reduced soil bulk density, increased soil total and capillary porosity, changed the soil solid–liquid–gas ratio (increased the liquid and air ratios and decreased the solid ratio), and increased soil macroaggregates (&amp;gt;0.25 mm) and aggregate stability, which enhanced the soil’s physical properties. Furthermore, the co-application improved soil pH and soil enzyme activity (urease, sucrase, and catalase) and had a significant effect on promoting SOM. The soil total N, P, and K of CF and CF1, were 23.48, %, 47.28%, and 26.59% and 9.47%, 43.98%, and 27.87% higher than those of the control, respectively. The soil available nutrients (N, P, and K) increased in the co-application treatment, shown as the nitrogen was promoted higher in the early growth of rice, while phosphorus and potassium were exhibited greater in the late growth. With the soil amendment, the co-application increased the rice plant height and dry matter accumulation, and the CF and CF1 increased yields by 5.78 and 2.41%, respectively, by increasing the rice effective panicles, grains per panicle, and seed-setting rate. The co-application of biochar and chemical fertilizers could significantly amend soil properties and reduce chemical fertilizer use to ensure rice–grain output, which has an important significance for enhancing sustainable soil and crop productivity.

Modeling the Effects of Elevated Temperature and Weed Interference on Rice Grain Yield.

A 3-year phytotron study was conducted in Suwon (37.27°N, 126.99°E), Korea, to evaluate and model the effects of elevated temperature on rice-weed competition. The dry weight and the number of panicles in rice were the most susceptible components to weed interference during the early growth of rice, regardless of weed species, while other yield components, including the number of grains, % ripened grain, and 1000-grain weight, were more susceptible to elevated temperature. A rectangular hyperbolic model well demonstrated that rice grain yield was affected by weed interference under elevated temperature, showing that the competitiveness of late watergrass (Echinochloa oryzicola) and water chestnut (Eleocharis kuroguwai) increased under elevated temperature conditions. Quadratic and linear models well described the effects of elevated temperature on the weed-free rice grain yield and weed competitiveness values of the rectangular hyperbolic model for the two weed species, respectively. Thus, a combined rectangular hyperbolic model incorporated with the quadratic and linear models well demonstrated the effects of elevated temperature and weed interference on rice grain yield across years. Using the combined model and estimated parameters, the rice grain yields were estimated to be 58.9, 48.5, 41.3, and 35.9% of the yields under weed-free conditions for 80 plants m−2 of late watergrass and 86.8, 64.3, 51.1, and 42.3% of the yields under weed-free conditions for 80 plants m−2 of water chestnut at 1,300, 1,500, 1,700, and 1,900°C·days of accumulated growing degree days (GDD; from transplanting to flowering, 89 days), respectively. The combined model developed in this study can provide an empirical description of both the elevated temperature and weed interference effects on rice yield and can be used for predicting rice grain yields due to weed interference under future elevated temperature conditions.

The combination of different nitrogen fertilizer types could promote rice growth by alleviating the inhibition of straw decomposition

AbstractStraw return plays an important role in the improvement of farmland ecological environments, increasing soil fertility, crop quality, and yield. However, in the early growth of rice (Oryza sativa L.), straw decomposition and rice growth may be inhibited by suboptimal carbon/nitrogen (C/N) ratios. We, therefore, explored methods that could alleviate the inhibition of straw decomposition using different combinations of ammonium bicarbonate and compound fertilizer. No fertilizer (CK) and compound fertilizer (S0) were used as the control. The ratios of added ammonium bicarbonate were 10% (S1), 20% (S2), 30% (S3), and 40% (S4), respectively. Compared with the S0 treatment, the S2 treatment accelerated straw decomposition, promoted the early growth of tillers and roots, and improved the leaf area index, dry matter accumulation, and N use efficiency (apparent N utilization, agronomic N utilization, and partial factor productivity increased by 4.05‒19.48% in two years). Moreover, panicle number, filled‐grain percentage, and 1000‐grain weight were significantly higher in the S2 treatment than other treatments. The grain yield of S2 treatment was significantly higher than that of S0 treatment by 4.06% (2019) and 5.66% (2020). Regression analysis revealed that the optimal ratios of ammonium bicarbonate for increasing straw decomposition and grain yield were relatively close, 16.27% and 14.60%, respectively. These results suggest that compared with conventional fertilization method (S0), the 20% treatment is a more effective fertilization method that prevents inhibition of straw decomposition, promoting rice growth and yield, and improving nitrogen (N) use efficiency.

Allelopathic Effect of Lamiaceous Weeds on Seed Germination and Early Growth of Aromatic Rice (Oryza sativa ‘Gobindobhog’)

Abstract The present study reveals the allelopathic effect of aqueous leaf and root extracts of Hyptis suaveolens (L.) Poit. and Leucas cephalotes (Roth) Spreng. on seed germination and early growth of Oryza sativa ‘Gobindobhog.’ Leaf and root extracts at different concentrations (0.5%, 1%, 2.5%, 4%, and 5%) were used to study the effect in laboratory-based experiments. After 5 days of incubation, seed germination and root and shoot length of rice seedlings were measured, and both H. suaveolens and L. cephalotes showed allelopathic effects on seed germination and growth parameters. Hyptis suaveolens showed a more pronounced effect at 5% concentration of aqueous leaf and root extracts than L. cephalotes . The inhibitory effects were as follows: root length &gt; seed germination &gt; shoot length. Both H. suaveolens and L. cephalotes impede seed germination and early growth of rice by releasing water-soluble allelochemicals from their leaves and roots.

ZnO nanoparticle-based seed priming modulates early growth and enhances physio-biochemical and metabolic profiles of fragrant rice against cadmium toxicity

BackgroundCadmium (Cd) is amongst the most toxic heavy metals that severely affects crop growth, whereas application of nanoparticles (NPs) to negate the toxic effects of heavy metals could be an effective management approach. In the present study, the seeds of two fragrant rice varieties i.e., Yuxiangyouzhan and Xiangyaxiangzhan under normal and Cd stress conditions i.e., 0 and 100 mg L− 1 applied with four levels of ZnO NPs i.e., 0, 25, 50, and 100 mg L− 1.ResultsSeed priming with ZnO NPs had no significant effect on the seed germination (p > 0.05) however, it substantially improved the seedling growth and other related physiological attributes under the Cd stress. The mean fresh weight of the shoot, and whole seedling was increased by 16.92–27.88% and by 16.92–27.88% after ZnO NPs application. The root fresh weight, root-shoot length was also substantially improved under ZnO NPs treatment. Moreover, application of ZnO NPs induced modulations in physiological and biochemical attributes e.g., the superoxide dismutase (SOD) activity in root and shoot, the peroxidase (POD) activity and metallothionein contents in root were increased under low levels of ZnO NPs. The α-amylase and total amylase activity were improved by ZnO NPs application under Cd Stress. Besides, modulation in Zn concentration and ZnO NPs uptake in the seedling were detected. The metabolomic analysis indicated that various pathways such as alanine, aspartate and glutamate metabolism, phenylpropanoid biosynthesis, and taurine and hypotaurine metabolism were possibly important for rice response to ZnO NPs and Cd.ConclusionOverall, application of ZnO NPs substantially improved the early growth and related physio-biochemical attributes in rice. Our findings provide new insights regarding the effects of ZnO NPs on seed germination, and early growth of rice, and its potential applications in developing crop resilience against Cd contaminated soils.

Integrated rice management simultaneously improves rice yield and nitrogen use efficiency in various paddy fields

The hilly area of Southwest China is a typical rice production area which is limited by seasonal droughts and low temperature in the early rice growth period. A field experiment was conducted on three typical paddy fields (low-lying paddy field, medium-elevation paddy field, and upland paddy field) in this region. Nitrogen (N) treatment (180 kg N ha−1 year−1) was compared to a control treatment (0 kg N ha−1 year−1) to evaluate the effects of integrated rice management (IRM) on rice growth, grain yield, and N utilization. Integrated rice management integrated raised beds containing plastic mulch, furrow irrigation, and triangular transplanting. In comparison to traditional rice management (TRM), IRM promoted rice tiller development, with 7–13 more tillers per cluster at the maximum tillering stage and 1–6 more tillers per cluster at the end of tillering stage. Integrated rice management significantly increased the rice aboveground biomass by 34.4%–109.0% in different growth periods and the aboveground N uptake by 25.3%–159.0%. Number of productive tillers significantly increased by 33.0%, resulting in a 33.0% increase in grain yield and 8.0% improvement of N use efficiency (NUE). Grain yields were significantly increased in all three paddy fields assessed, with IRM being the most important factor for grain yield and productive tiller development. Effects of paddy field type and N level on N uptake by aboveground plants were reflected in the rice reproductive growth period, with the effects of IRM more striking due to the dry climate conditions. In conclusion, IRM simultaneously improved rice yield and NUE, presenting a valuable rice management technique in the paddy fields assessed.

High frequency of transversion mutations in the rice (Oryza sativa L.) mutant population produced by diepoxybutane mutagenesis

Discovering new genetic mutations is vital for expanding genetic resources for exploring the functions and breeding applications of genes. In this study, we created new mutant populations of rice and evaluated its effectiveness by using a chemical mutagen diepoxybutane (DEB) with the expectation of manageably causing small-scale deletions that induce knock-out mutations. Compared with the more common mutagen, ethyl methanesulfonate (EMS), DEB exhibited approximately 160 times the adverse impact on the early growth of rice. At 0.3 mM, which was 1/160 the concentration of EMS in the control population, the heading date in the DEB-mutated population showed dispersion, albeit with a small standard deviation. Therefore, similar to EMS, DEB has been shown to induce DNA mutations. According to the screening of waxy mutants using the Targeting Induced Local Lesions in Genomes (TILLING) method, DEB-mutated populations had nearly similar mutation frequencies to those of EMS-mutated populations. Therefore, we successfully isolated five mutant lines from the DEB-mutated population. Some of these mutants exhibited a low-amylose phenotype, which is applicable to breeding leading to enhanced taste evaluation. To utilize these mutated alleles, we developed co-dominant DNA markers. In this study, EMS induced transition mutations, as previously reported. In contrast, DEB specifically induced transversion mutations rather than small-scale deletions contrary to our initial expectations. These results demonstrate that DEB has a novel point of action for mutation and is useful for expanding genetic resources for crops.

Azolla incorporation and dual cropping influences CH4 and N2O emissions from flooded paddy ecosystems

ABSTRACT To investigate the influence of Azolla (A. filiculoides Lam.) incorporated as a green manure and its subsequent growth as a dual crop with rice on simultaneous methane (CH4) and nitrous oxide (N2O) emissions from a flooded alluvial soil planted with rice, a pot experiment with three treatments, chemical fertilizers (NPK) as the control, incorporation of Azolla as green manure (AGM), and AGM plus basal chemical fertilizers (NPK+AGM) was conducted in Tsuruoka, Yamagata, Japan in 2017. AGM and NPK+AGM treatments significantly increased CH4 emissions at early rice growth stages before 63 days after transplanting (DAT) by 123.0% and 176.7% compared to NPK, respectively. At late rice growth stages (after 63 DAT), only the NPK+AGM treatment significantly increased CH4 emission by 22.1% compared to NPK. However, percentage of CH4 emitted after 63 DAT relative to the seasonal CH4 emission followed the order of NPK (86.2%) > AGM (76.5%) > NPK+AGM (73.3%). Higher CH4 emissions from AGM and NPK+AGM before 63 DAT were attributed to the incorporated Azolla, while the higher emissions after 63 DAT in all treatment groups were ascribed to rice photosynthesis. AGM and NPK+AGM treatments significantly decreased N2O emissions by 71.6% and 81.1% compared to NPK, respectively, at early rice growth stages. Azolla incorporation may have restricted N2O emission from initial soil nitrate before 63 DAT and not have contributed to N2O emissions after 63 DAT. Significantly higher grain yields were observed under the AGM (32.5%) and NPK+AGM (36.3%) compared to NPK. Together, AGM and NPK+AGM treatments significantly increased seasonal CH4 emissions by 31.5% and 43.5%, and decreased seasonal N2O emissions 3.4- and 4.6- fold compared to NPK, respectively. There were no significant differences in the CH4 emissions per grain yield among the treatments; however compared to NPK, AGM and NPK+AGM treatments significantly reduced N2O emissions per grain yield by 78.7% and 84.1%, respectively.

Thermotolerance evaluation of Taiwan Japonica type rice cultivars at the seedling stage

BackgroundThe subtropical rice varieties grown in Taiwan are mainly Japonica-type rice varieties, which are grown in the southernmost- and lowest-latitude Japonica type rice cultivation area in the world. In Taiwan, seedlings that are planted either by transplanting or direct seeding in the second crop will face the season with the highest temperatures during the year. High-temperature stress severely influences early rice growth and causes yield losses. With global warming deteriorating, this problem is becoming increasingly severe. This study attempted to establish a high-efficiency and time-saving screening tool for rice varieties that exhibit thermotolerance during the early growth stages and further identify good donors with better tolerance for high temperature stress from Taiwan Japonica type rice germplasm.ResultsDuring the initial germination stage, there were significantly different responses to heat stress among the different rice varieties. After the temperature induction response technique (TIR) treatment, the seedling survival rate and relative growth rate of the rice varieties under high temperature stress were significantly improved. In addition, the seedlings of the thermotolerant varieties demonstrated greater thermotolerance performance in the pot experiment as well as cell membrane stability (CMS) and cell activity (2,3,5-triphenyl-tetrazolium chloride; TTC) test results. However, the correlation between the thermotolerance of the seedlings and seeds was low. A phylogenetic dendrogram was plotted and revealed that thermotolerant genes did not concentrate in specific clusters. Furthermore, there was a non-significant correlation between the thermotolerance of the varieties and the years in which they were released.ConclusionsThe temperature induction screening tool established by this study could determine the potential of each variety to adapt to high temperature stress. Additionally, thermotolerance during different growth stages (i.e., the germination, seedling, and grain maturation stages) exhibited low correlations. In this study, the varieties obtained through preliminary screening (i.e., TK14, HC56, TT30, TNG70, and TK8) exhibited outstanding thermotolerance. The screen tools and thermotolerance varieties could be valuable resources for the countries that grow Japonica type rice to apply when breeding thermotolerant varieties in the future.

Fly ash and zeolite decrease metal uptake but do not improve rice growth in paddy soils contaminated with Cu and Zn

Fly ash (FA) and zeolite (Z) are known to reduce bioavailability of metals in soils via immobilization; however, these amendments may not only immobilize metals such as copper (Cu) and zinc (Zn), but also reduce nitrogen (N) and phosphorus (P) availability in the soils via sorption (for N by Z) and precipitation (for P by FA). This study was conducted to evaluate the effects of application of FA and Z (0, 5, and 10% rate) on the availability of nutrients as well as metals in the metal-contaminated soils cultivated with paddy rice (Oryza sativa L.). Both FA and Z reduced Cu and Zn uptake by rice while increasing metal retention in the soils regardless of the application rates. However, reduced uptake of metals did not translate into increase in rice growth, especially at the 10% of amendment rates, due to decreased nutrient uptake as indicated by higher NH4+ and available P concentration in the soils amended with Z and FA, respectively, which inhibited tillering in the early rice growth period and thus reduced biomass accumulation at maturity. Our results suggest that FA and Z may reduce Cu and Zn uptake by rice in the soils contaminated with the metals; however, the availability of N and P is likely to be co-decreased. We suggest that the capacities of FA and Z to immobilize nutrients as well as metals need to be considered prior to using the amendments in metal-contaminated rice paddies.

Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.

Glycolysis is a central metabolic pathway that provides energy and products of primary metabolites. 2,3-Biphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a key enzyme that catalyses the reversible interconversion of 3-phosphoglycerate (3-PGA) to 2-phosphoglycerate (2-PGA) in glycolysis. Low temperature is a common abiotic stress in rice production. However, the mechanism for rice iPGAM genes is not fully understood at low temperature. In this study, the rice mutant tcm12, with chlorosis, malformed chloroplasts and impaired photosynthesis, was grown at a low temperature (<20°C) to the three-leaf stage, while the normal phenotype at 32°C was used. Chlorophyll fluorescence analysis and transmission electron microscopy were used to examine features of the tcm12 mutant. The inheritance behaviour and function of TCM12 were then analysed thorough map-based cloning, transgenic complementation and subcellular localisation. The thermo-sensitive chlorosis phenotype was caused by a single nucleotide mutation (T→C) on the fifth exon of TCM12 (LOC_Os12g35040) encoding iPGAM, localised to both nucleus and membranes. In addition, TCM12 was constitutively expressed, and its disruption resulted in down-regulation of some genes associated with chlorophyll biosynthesis and photosynthesis at low temperatures (20°C). This is the first report of the involvement of rice iPGAM gene in chlorophyll synthesis, photosynthesis and chloroplast development, providing new insights into the mechanisms underlying early growth of rice at low temperatures.