Early Pleistocene Research Articles

On the last European giraffe, Palaeotragus inexspectatus (Mammalia: Giraffidae); new remains from the Early Pleistocene of Greece and a review of the species

Abstract Eurasian Giraffidae went through a drastic biodiversity decline after the Miocene–Pliocene boundary; scanty palaeotragine populations are likely to have survived in Central Asia, providing the necessary stock for a Late Pliocene–Early Pleistocene expansion from Central Asia to Spain and from the Mediterranean to southern Russia. Here, we describe new giraffid findings from the Greek middle Villafranchian faunas of Dafnero-3 and Volax and from the late Villafranchian faunas of Tsiotra Vryssi and Krimni-3, and we revise previous material from Dafnero-1. Our results support the synonymy of almost all the Villafranchian Eurasian giraffids under a single species of Palaeotragus, i.e. Palaeotragus inexspectatus, and allow us to improve its diagnosis. The orientation of the ossicones and the relative shortening of the lower premolar row might indicate affinities to some Late Miocene–Pliocene Palaeotragus from China. Our study suggests that P. inexspectatus was equally abundant at MNQ17 and MNQ18 in the Eastern Mediterranean and that its extinction after MNQ19 was probably attributable to the combination of the climatic and environmental turnover at the Villafranchian–Epivillafranchian boundary, along with the competition with emerging ruminant groups, such as giant cervids. A preliminary analysis of its palaeoecology suggests a giraffid more involved in grazing than its Late Miocene relatives.

The onset of Pliocene–Early Pleistocene fluvial aggradation in the Southeastern Alpine Foreland (Velenje Basin, Slovenia) and its paleoenvironmental implications

ABSTRACTIn this study, we focused on the Pliocene–Early Pleistocene fluvial terraces in the Velenje Basin and reconstructed the morphostratigraphy, sedimentary depositional environment, provenance and age of the gravel deposits using geomorphological, sedimentological, petrographic and chronological analyses. Geomorphological mapping revealed the presence of two main river‐terrace groups. The terraces in the older terrace group are severely degraded and preserved only as remnants capping high ground, while in contrast the younger group is better preserved. Detailed lithofacies analyses of four selected stratigraphic sections of the older terrace group show that the gravel was deposited in a meandering and wandering environment. The gravel consists of metamorphic, igneous, volcaniclastic, clastic and carbonate lithologies derived from the north, east and west from the Paka River catchments. To determine the timing of deposition, we performed isochron‐burial dating using cosmogenic 26Al and 10Be. Our new age constraints date the deposition of the older terrace group to 2.7 ± 0.3 Ma. Establishing the aggradation and incision model of the Velenje Basin documents pronounced regional tectonic uplift during the Pliocene–Early Pleistocene, which led to incision and the subsequent formation of a terrace staircase.

Early Pleistocene upper bathyal communities in fault-bounded paleovalleys of the island of Rhodes (Greece)

Abstract Two sediment sections are investigated at Cape Arkhangelos, island of Rhodes, where Pleistocene marine sediments crop out in horsts and grabens of a Mesozoic basement. There, hemipelagic sediments characterized by upper bathyal communities are atypically mixed with much shallower faunal components because they were deposited close to rugged coastal landforms. Biostratigraphic analyses show that the sections were deposited between 1.8 and 0.9 Ma, and between 1.8 and 1.6 Ma, respectively. By combining the planktonic/benthic foraminiferal ratio with 31 bathymetric indicators chosen among extant species of benthic foraminifera, mollusks, and bryozoans, we show that relative sea-level fluctuations can be reconstructed in these atypical settings despite the proximity of steep slopes that favored transportation of allochthonous fauna. The shallow-water components (including gravels and calcareous algae) were transported downslope by the combined action of gravity, currents, and tectonic disturbance that promoted drowning (with a maximum flooding recorded at ca. 1.7 Ma) and then uplift of fault-bounded paleovalleys that formed during the Early Pleistocene. Abrupt facies changes and age differences between sections have been triggered by the irregular paleotopography of the Mesozoic basement, which fostered differential depositional settings, with outer to middle neritic deposits above the horsts and upper bathyal deposits in paleovalleys.

Tooth wear analyses track niche partitioning at Gerakarou, a 1.8 Ma old site from Greece

The climatic instability of the Early Pleistocene induced regional paleoenvironmental changes, which impacted faunal composition and dynamics. It coincides with the Homo dispersal out of Africa. The role played by the Eastern Balkans in this dispersal is at the heart of current scientific debates. The rich fossil assemblage of Gerakarou-1 (2–1.8 Ma; northern Greece) can provide important insight into the environmental conditions of that time and area. In this study, we provide insights into the dietary habits of the herbivore guild of Gerakarou-1 at both short and long-term scales based on two complementary dental proxies, mesowear and microwear textures applied on 70 specimens and we infer the local paleoecology and paleoenvironment. As diet varies between and among populations within the same species, we conduct a population-level study, including a reference dataset of 144 extant individuals belonging to six populations of ruminants with well-known ecology. As we aim to contribute to the collective effort of the community to improve the mesowear methodology, we propose and discuss here the benefits of an alternative, quantitative Geometric Morphometric approach. We show that the occlusal relief, as calculated in the classical mesowear approach, is a variable of little relevance and that the quantitative approach allows better discrimination between dietary categories. By proposing for the first time a multi-scale and multi-proxies study of the entire herbivore guild at Gerakarou-1, we nuance and clarify the paleoecology and niche-partitioning of the ungulates from this site and improve past paleoenvironmental interpretations.

Leeuwin current dynamics in the SE Indian Ocean and implications for regional surface hydrography since the latest Miocene: Results from ODP Site 763A

This study examines the relationship between the ocean circulation dynamics in the eastern Indian Ocean and climate variability in Northwest (NW) Australia over the last 6.1 million years. The vertical water column of the southeastern Indian Ocean was analyzed using planktic foraminifera assemblages, and oxygen and carbon isotope ratios of surface and subsurface dwelling foraminifera from Ocean Drilling Program (ODP) Site 763A. The X-ray fluorescence data of bulk sediment from ODP Site 763A was also used to understand variability in relative humidity and aridity in NW Australia associated with surface ocean warming. The findings suggest a pronounced change in surface oceanography and climate in the region from 5.4 to 5 Ma, indicating a weak Leeuwin Current (LC) and reduction in mixed layer thickness. Subsequently, between 5.0 and 3.6 Ma, a strongly stratified water column with a thick mixed layer and deep thermocline emerged owing to the intensified Indonesian Throughflow (ITF). This led to a strengthened LC and diminished surface productivity, corresponding to a wet phase in NW Australia. The closure of the Indonesian Seaway during the Middle Pliocene (3.6–3.2 Ma) restricted the flow of West Pacific Warm Water into the Indian Ocean, weakened the LC and intensified the dry phase in NW Australia. Significant shifts in planktic foraminifera abundances are observed in the early Pleistocene (2.6–1.2 Ma) perhaps linked to major changes in surface ocean circulation. During the Mid-Pleistocene Transition (1.2–0.6 Ma), the West Australian Current exerted a significant influence over Site 763A.

The postcranial variability of Quaternary European rhinoceroses: the case study of Stephanorhinus hundsheimensis from the Middle Pleistocene site of Contrada Monticelli (Apulia, southern Italy)

ABSTRACT Five rhinoceros species, mainly distinguishable through cranial, mandibular and dental morphology, were recognized during the Quaternary across Europe. The postcranial morphology of these taxa is quite variable, with strong superposition among species, especially between Stephanorhinus etruscus and Stephanorhinus hundsheimensis. Here, the complete sample including 25 postcranial bones from the early Middle Pleistocene site of Contrada Monticelli (Apulia, southern Italy) is described and compared through morphological and biometric analyses. A few bones, in addition to cranial and mandibular remains from this site, have been previously referred to Stephanorhinus hundsheimensis. We explored the morphological variability of Stephanorhinus hundsheimensis from Contrada Monticelli against the diagnostic characters described in the literature. The size variation of the Contrada Monticelli sample is also investigated, through a comparison with other Quaternary European rhinoceros samples. Our results indicate a wide morphological variability with several distinct characters and a strong morphological affinity between Stephanorhinus etruscus and S. hundsheimensis. Our results suggest that Stephanorhinus hundsheimensis from Contrada Monticelli is a species with a high degree of intraspecific variability, possibly a hybrid population or a population including two morphotypes of the same species.

Plecotus macrobullaris sarmaticus subsp. nov. (Vespertilionidae, Chiroptera) from the Early Pleistocene of Crimea.

The extinct mountain long-eared bat Plecotus macrobullaris sarmaticus subsp. nov. is described on the base of jaw remains from the Lower Pleistocene of the Taurida cave in central Crimea. This is the first record of the genus Plecotus in the Lower Pleistocene of Russia and the first fossil find of P. macrobullaris Kuzyakin, 1965, documenting the early stage of the evolutionary history of the species.

Cryospheric and Oceanographic Evolution in the Arctic Makarov Basin Since the Early Pleistocene Revealed by Bulk Mineral Assemblages

AbstractWe present the glacial history of the Makarov Basin (western Arctic Ocean) during the last ∼1.1 Myr, with sediment provenances using the newly refined chronostratigraphy of core ARA03B‐41GC02. According to the principal component analysis of the bulk mineral assemblages, felsic minerals were dominant, and their ratios (K‐feldspar/plagioclase and quartz/feldspars) indicated that sediment supply to the Makarov Basin was mainly from the Siberian margin and partly from northern North America, including the Canadian Arctic. However, their occurrence did not vary significantly between interglacials and glacials due to the mixed sources. In contrast, clinopyroxene and dolomite indicated specific sediment origins from the eastern Siberian margin and northern North America, respectively. The clinopyroxene content followed an eccentricity cycle (∼100‐Kyr) during the early to middle Pleistocene, suggesting that the eustatic sea level changes may have influenced its input from the eastern Siberian margin. The dolomite, transported primarily by icebergs from the Arctic sector of the Laurentide Ice Sheet (LIS) in northern North America, has also followed the same cycle since the early Pleistocene. Thus, the mineralogical signals highlight that sediment origins and transport processes in the Makarov Basin were related to ice sheet evolution at the eccentricity cycle. In addition, dolomite deposition in the Makarov Basin began by the early Pleistocene (∼790 ka), ∼150 ka earlier than in previous North Atlantic records (∼640 ka), indicating the earlier LIS calving in the Arctic sector than in the Atlantic sector.

Equifinality and unusual genesis of closed depressions in a mixed carbonate/igneous terrain

Closed depressions such as sinkholes and pits can form through various subsurface processes, leading to similar surface expressions. This study analyzes closed depressions in eastern Galilee, Israel, to evaluate their potential origins. Ten depressions were surveyed, including shallow bowl-like forms and steep-walled pits. The terrain comprises faulted Cretaceous carbonates intruded by Early Pleistocene basalts dated to around 2.25 Ma. The circular morphology of the depressions and lack of ejecta indicate collapse into subsurface voids. Field evidence and geophysical data reveal a complex interplay of tectonic and volcanic factors. Some depressions appear to be structurally controlled by dilational normal faults, while others appear to be associated with volcanic features like dikes. Karst processes in the soluble carbonates likely contributed, most probably by hypogene dissolution related to magmatic fluids which may have enhanced void development. A dike identified within depressions suggests void formation through inflation and deflation of intrusions. Progressive collapse and erosion modified steep pits into shallow bowl-like depressions over time. Our results highlight the equifinality of closed depressions, wherein similar morphologies can arise through multiple subsurface processes. Unraveling this complexity has significance for interpreting pit craters on planetary surfaces using remote sensing.

Siwalik sabrecats: review and revised diagnosis of Megantereon fossils from the foothills of the Himalaya.

The diagnosis of different fossil taxa in small collections from disparate geographical and temporal contexts is a common challenge in palaeontology. The likely number of morphospecies of the extinct sabretooth cat Megantereon is a classic example and subject of long-standing debate. While analyses of global fossil collections have provided insights and hypotheses, specimens from the foothills of the Himalaya-the Siwaliks-have been overlooked in recent treatments due to poor characterization and a confused taxonomic history. Here, this oversight is addressed. Craniodental fossils from the Siwaliks are revisited and their taxonomic status is reviewed. Morphological and metric characteristics are described, and qualitative and quantitative comparisons with congenerics are performed with published descriptions and datasets. The Lower Pleistocene Siwalik Megantereon are among the largest known forms in the genus. Advanced characteristics include reduced upper third premolars and long but comparatively narrow carnassial teeth. While dietary specialism can constrain morphological diversity, statistical analyses, including controls for body size effects, detected significant metric differences in the mandibles in comparison with congenerics. Within current paradigms, the status of Megantereon falconeri as a distinct morphospecies is upheld. A revised diagnosis is provided and the taxonomic affinities of M. falconeri are considered.

New Late Pleistocene age for the Homo sapiens skeleton from Liujiang southern China

The emergence of Homo sapiens in Eastern Asia is a topic of significant research interest. However, well-preserved human fossils in secure, dateable contexts in this region are extremely rare, and often the subject of intense debate owing to stratigraphic and geochronological problems. Tongtianyan cave, in Liujiang District of Liuzhou City, southern China is one of the most important fossils finds of H. sapiens, though its age has been debated, with chronometric dates ranging from the late Middle Pleistocene to the early Late Pleistocene. Here we provide new age estimates and revised provenience information for the Liujiang human fossils, which represent one of the most complete fossil skeletons of H. sapiens in China. U-series dating on the human fossils and radiocarbon and optically stimulated luminescence dating on the fossil-bearing sediments provided ages ranging from ~33,000 to 23,000 years ago (ka). The revised age estimates correspond with the dates of other human fossils in northern China, at Tianyuan Cave (~40.8–38.1 ka) and Zhoukoudian Upper Cave (39.0–36.3 ka), indicating the geographically widespread presence of H. sapiens across Eastern Asia in the Late Pleistocene, which is significant for better understanding human dispersals and adaptations in the region.

First record of well-preserved canid coprolites from Eurasia: New insights into the unique ecological niche of Yuanmou Basin

This study reconstructs the Early Pleistocene paleoenvironment of the Yuanmou Basin through coproecology of the third member of the Yuanmou Formation. We examined 38 exceptionally well-preserved coprolites from a new fossil locality, and attributed the putative defecating agent to the hypercarnivorous diet canid, Sinocuon yuanmouensis through geochemical and quantitative analyses. A new ichnogenus and ichnospecies, Cuocopros yuanmouensis igen. et. isp. nov., was established based on distinctive characteristics. Multi-disciplinary analysis, including sediment palynology and lithostratigraphy, helped primarily reconstruct a significant climatic event during the early Pleistocene, coinciding with the emergence of Yuanmou Man during the fourth member of the Yuanmou Formation's deposition. The findings provide insights into coexistence between canids, hyaenas, hominoids, and other fauna, revealing a rich paleoecosystem and food chain in the region's history. This study contributes to understanding the complex ecological dynamics during this period in the Yuanmou Basin.

The Hasli Formation of the Irchel Plateau – A key record for older Early Pleistocene interglacial sediments in northern Switzerland

In the Alpine region of Central Europe, terrestrial Early Pleistocene deposits with preserved faunal and botanical remains are rare. The predominantly gravelly Höhere Deckenschotter (HDS) deposits of northern Switzerland and adjoining south-western Germany are considered the oldest Quaternary sediments in the northern Alpine Foreland, linked with the first extensive Quaternary Alpine glaciations.This multidisciplinary study investigates the Hasli Formation (HF), a unique silty unit with well-preserved biological remains within an HDS sequence at the Irchel Plateau north of Zürich, providing new climatic and environmental data for these exceptional deposits, as well as crucial information about their age. Systematic mapping of the HF, in addition to the underlying and covering gravel units, has been coupled with sedimentary logging and biostratigraphic analysis at several sites. The HF is present over an area c.4 by up to 1.4 km, and where studied is 1.6–6.2 m thick. The sediments and biological material are indicative of overbank deposits accumulating within the damp floodplain of a large meandering river.The recovered small mammal remains are from eight arvicolid species or genera, including Mimomys pliocaenicus, M. reidi/tigliensis and Clethrionomys cf. kretzoii, which became extinct c.1.8 Ma, and Pliomys episcopalis/simplicior, which first appeared c.2 Ma ago. The over 75k identified molluscs, include c.72k coming from 89 terrestrial species and over 3k from 28 aquatic taxa. The molluscan faunas from all locations where the HF has been studied share important biostratigraphic marker species, and indicate analogous climatic and environmental conditions. The marker species include several that became extinct during the Early Pleistocene, of which Clausilia stranzendorfensis and Cochlostoma salomoni, present throughout the HF, are the most important as they disappeared c.1.8 Ma. Many marker species have modern or palaeo-distributions that lie far to the west, south and east of the Swiss Plateau, showing that the climate was much warmer than today, typical for the Tiglian warm stage. The alluvial floodplain was covered by rather dense, mature woodland.Amino acid (AA) analysis shows that molluscan remains from the HF are among the oldest of the Quaternary shell material studied from across the Swiss Plateau. Palaeomagnetic data shows a change from reversed to normal polarity within the upper part of the HF. When combined, the small mammal and molluscan remains, palaeomagnetic measurements, AA geochronology and sedimentary data, suggest an age of 2.1–1.8 Ma for the HF. Recently produced cosmogenic dates bracket the age of the HDS gravels beneath the HF to depositional periods between 2.6 and 0.9 Ma, with the youngest ages being in disagreement with our findings. The abundance and diversity of the molluscs from the Irchel Plateau, with several rare extinct species, together with a notable small mammal assemblage, make this a key palaeontological site and an important reference point for European Quaternary biostratigraphy.

Thermal stability of the electron spin resonance signal of modern continental barite

The electron spin resonance (ESR) method has been successfully applied to dating hydrothermal barite; however, there have been few studies of modern continental barite, such as that generated by fault movement or in sedimentary deposits. To better understand the geological processes involved in the formation of continental barite, its thermal characteristics and age firstly need to be defined. In this study, one fault barite sample and two sedimentary barite samples were obtained from continental sites in China for ESR signal thermal stability experiments. Microwave-power experiments indicate that 0.5 mW produces the maximum ESR signal intensity and the highest signal-to-noise ratio. Stepwise-heating results reveal that ESR signal intensities remain stable below 100 °C then show an increasing trend that peaks at ∼180 °C, following which they decrease rapidly between 180 and 320 °C and disappear at ∼380 °C. Isothermal heating results show that ESR signal intensities remain stable within a temperature range of 100–200 °C but show a decreasing trend for temperatures of 240–320 °C. These results indicate that the thermal decay of the ESR signal intensity for the three studied continental barites follows second-order decay kinetics. The thermal lifetimes calculated for the three samples are 6.3 × 108, 7.5 × 107, and 8.7 × 106 a, respectively. Thus, barite ESR dating can be used to date related geological events since early Pleistocene.

Conserved DNA sequence analysis reveals the phylogeography and evolutionary events of Akebia trifoliata in the region across the eastern edge of the Tibetan Plateau and subtropical China

BackgroundThe eastern edge of the Qinghai‒Tibet Plateau (QTP) and subtropical China have various regions where plant species originate and thrive, but these regions have been the focus of very few integrative studies. Here, we elucidated the phylogeographic structure of a continuous and widespread Akebia trifoliata population across these two regions.ResultsSixty-one populations consisting of 391 genotypes were examined to assess population diversity and structure via network distribution analysis, maximum likelihood phylogenetic tree reconstruction, divergence time estimation, demographic history inference, and ancestral area reconstruction of both conserved internal transcribed spacer (ITS) and chloroplast (rps16) DNA sequences. The results showed that the ITS region was more variable than the rps16 region and could be suitable for studying intraspecific phylogeography. The A. trifoliata population displayed high genetic diversity, genetic differentiation and obvious phylogeographical structure, possibly originating on the eastern QTP, expanding during the last glacial-interglacial cycle, diverging in the early Pleistocene and middle Pleistocene, and extensively migrating thereafter. The migration route from west to east along rivers could be largely responsible for the long-distance dispersal of this species, while three main refuges (Qinba Mountains, Nanling Mountains and Yunnan-Guizhou Plateau) with multiple ice shelters facilitated its wide distribution.ConclusionsOur results suggested that the from west to east long migration accompanying with the minor short reciprocal migration in the south-north direction, and the three main refuges (the Qinba Mountains, Nanling Mountains and Yunnan-Guizhou Plateau) contributed to the extant geographical distribution of A. trifoliata. In addition, this finding also strongly reduced the discrepancy between glacial contraction and postglacial expansion and the in situ survival hypothesis by simultaneously considering the existence of many similar climate-related ecological niches and migration influences.

Molecular phylogeny of the common wall lizard Podarcis muralis (Squamata: Lacertideae) in the southern Balkans

Abstract The lacertid wall lizards of the genus Podarcis (Wagler, 1830) originate from Western Europe and are divided into 24-25 species (Speybroeck et al., 2020). Despite the abundance of phylogenetic studies referring to the genus, the relationships among certain species, as well as the taxonomic status of some genealogical lineages, remain unclear due to great genetic diversity. The common wall lizard Podarcis muralis has a relatively wide distribution and despite the existence of various molecular studies focused on this species, its Greek populations had never been thoroughly sampled until now. To fill in this geographical gap, we sampled the species’ Greek distribution and constructed phylogenies that uncovered the presence of at least five monophyletic lineages that correspond to different geographic regions. Furthermore, species delimitation analyses assigned all lineages to a single species diversifying during the early Pleistocene (c. 1.93 mya). The strong association of the genetic lineages with specific geographical regions coupled with the Pleistocene diversification of the group imply the presence of multiple refugia within Greece and, by extension, the Balkan peninsula, supporting a refugia-within-refugia scenario. Finally, in an effort to clarify the position of these new samples within the larger phylogeny of P. muralis, a larger phylogeny was constructed which indicated that the Greek populations cluster with the central European, Italian and Turkish populations of the species.

Orbital- and millennial-scale Asian winter monsoon variability across the Pliocene–Pleistocene glacial intensification

Intensification of northern hemisphere glaciation (iNHG), ~2.7 million years ago (Ma), led to establishment of the Pleistocene to present-day bipolar icehouse state. Here we document evolution of orbital- and millennial-scale Asian winter monsoon (AWM) variability across the iNHG using a palaeomagnetically dated centennial-resolution grain size record between 3.6 and 1.9 Ma from a previously undescribed loess-palaeosol/red clay section on the central Chinese Loess Plateau. We find that the late Pliocene–early Pleistocene AWM was characterized by combined 41-kyr and ~100-kyr cycles, in response to ice volume and atmospheric CO2 forcing. Northern hemisphere ice sheet expansion, which was accompanied by an atmospheric CO2 concentration decline, substantially increased glacial AWM intensity and its orbitally oscillating amplitudes across the iNHG. Superposed on orbital variability, we find that millennial AWM intensity fluctuations persisted during both the warmer (higher-CO2) late Pliocene and colder (lower-CO2) early Pleistocene, in response to both external astronomical forcing and internal climate dynamics.

When the woolly rhinoceroses roamed East Asia: a review of isotopic paleoecology of the genus Coelodonta from the Tibetan Plateau to northern Eurasia

East Asia, being the evolutionary center of Coelodonta, offers a unique opportunity to explore the spatiotemporal paleoecologies of this genus. This study utilized bulk and serial stable carbon and oxygen isotope analyses on the Coelodonta nihowanensis and other ungulates from the Longdan fauna as well as two modern goats in the Linxia Basin, aiming to explore the paleoecology of C. nihowanensis at the periphery of the Tibetan Plateau during the Early Pleistocene. The isotopic results of these mammals indicated that C3 vegetation was possibly a major component of the local environment in the Linxia Basin, which was influenced by a seasonal summer monsoon. C. nihowanensis specimens in the Longdan fauna were possibly mixed feeders, as indicated by the wide distribution of their δ13C values and the intermediate δ18O values compared to other coexisting ungulates. Moreover, the comparison of the δ13C and δ18O values of similar taxa from the Linxia and Nihewan basins has revealed spatiotemporal differences in the paleoclimate and paleoenvironments of these two regions throughout the Early Pleistocene. This provides a holistic framework for understanding the paleoecology of the C. nihowanensis. The isotopic results of the C. nihowanensis in the Linxia and Nihewan basins suggested varied foraging ecologies across different sites and time spans during the Early Pleistocene. This underscores the adaptability of the C. nihowanensis to diverse environments from west to east in northern China. By scrutinizing the evolutionary ecological history of the woolly rhinoceroses from its ancestor, Coelodonta thibetana, to its final form, Coelodonta antiquitatis, this study sheds light on the ecological adaptation of this genus from the Pliocene to Late Pleistocene, spanning its migration from the Tibetan Plateau to northern Eurasia.

Three de novo assembled wild cacao genomes from the Upper Amazon

Theobroma cacao, the chocolate tree, is indigenous to the Amazon basin, the greatest biodiversity hotspot on earth. Recent advancement in plant genomics highlights the importance of de novo sequencing of multiple reference genomes to capture the genome diversity present in different cacao populations. In this study, three high-quality chromosome-level genomes of wild cacao were constructed, de novo assembled with HiFi long reads sequencing, and scaffolded using a reference-free strategy. These genomes represent the three most important genetic clusters of cacao trees from the Upper Amazon region. The three wild cacao genomes were compared with two reference genomes of domesticated cacao. The five cacao genetic clusters were inferred to have diverged in the early and middle Pleistocene period, approximately 1.83–0.69 million years ago. The results shown here serve as an example of understanding how the Amazonian biodiversity was developed. The three wild cacao genomes provide valuable resources for studying genetic diversity and advancing genetic improvement of this species.

Archaeological evidence of rodent consumption in North Africa: The Middle Stone Age of the rock shelter Ifri n'ammar in northeastern Morocco

This study presents undeniable evidence of anthropogenic exploitation of small mammals in Ifri n'Ammar rock shelter, located in the northeast of Morocco. Among the rodent species found at this site, Ctenodactylus gundi predominates in the assemblage of small mammals between approximately 130 ± 8 ka and 83 ± 6 ka. The taphonomic analysis of the fossil remains of this species, discovered alongside other components of the archaeological assemblage, clearly indicates that during the Middle Stone Age (MSA), humans consumed this species. Therefore, they are considered the main agents responsible for the accumulation of dental and postcranial remains of this species recorded in the shelter. Since the early Upper Pleistocene, bone elements bearing cut-marks and burn traces unequivocally attest to the consumption of this rodent by the hunter-gatherers at the Ifri n'Ammar rock shelter. Our findings regarding the exploitation of this species by humans in the northeastern region of Morocco are corroborated by ethnographic data, demonstrating that North African populations captured and consumed this large-sized rodent until the last century. The species Ctenodactylus gundi is known for its diurnal activity, gregarious and social habits, as well as its preference for rocky and arid environments.