A combined micropalaeontological, taphonomical and sedimentological study was carried out in the non-marine Barremian of the Maestrat Basin (E Iberian Chain) to elucidate the palaeoecology of Barremian charophytes. Understanding the palaeoecology of fossil charophytes is of prime importance for the accurate application of charophyte biozonations, since most species used as biostratigraphic markers and/or biozone index species are restricted to facies formed in a particular environment. Five charophyte biocoenoses were distinguished. (1) Charophyte association from freshwater alkaline lakes receiving low clastic input, mainly composed of Atopochara trivolvis var. triquetra, Clavator harrisii, Ascidiella stellata, and A. triquetra. The thalli known as Munieria grambastii, corresponding to Clavator utricles, were extremely abundant in the shallowest facies of the lake margins, and Hemiclavator-rich populations were also locally dominant. (2) An association characteristic of freshwater alkaline lakes with high clastic input was mainly composed of Echinochara lazarii, Globator maillardii var. trochiliscoides, A. trivolvis var. triquetra, C. harrisii, Hemiclavator neimongolensis var. neimongolensis, and locally also Clavator calcitrapus. (3) Monospecific populations of Porochara maestratica thrived in brackish settings with little clastic influence, whereas (4) monospecific E. lazarii populations thrived in clastic-influenced brackish settings. (5) A charophyte association grew in lakes that developed in mudflat to floodplain environments and was mainly constituted by E. lazarii, A. trivolvis var. triquetra, and C. harrisii var. harrisii and var. reyi. Accordingly, the palaeoenvironmental conditions inferred indicate that most of the charophyte species were controlled by (i) bathymetry, (ii) clastic content in the sedimentary environment and (iii) salinity. The stratigraphic succession studied shows an upwards increase in clastic content from the base to the top, which is associated with the more humid period recorded along the margins of the Tethys and the Boreal realm during the early Barremian–early late Barremian. In consequence, those species restricted to clastic-poor settings are constrained to the lower part of the section, whereas those taxa that were able to thrive in clastic-rich settings persisted throughout the entire section. This observation establishes a link between the changes observed in the charophyte floras recognized and the environmental changes that occurred during the Barremian in western Europe.