Source water quality is a key determinant of drinking water quality. The recast European Union 2020/2184 Drinking Water Directive (DWD) introduced the obligation for comprehensive risk assessment in drinking water supplies, including hazard assessment of the water source. The DWD also requires further elements of natural origin to be monitored, including U, Ca, Mg and K. The current study is the first comprehensive assessment of 15 natural elements (B, Ba, Be, Ca, Co, K, Li, Mg, Mo, Na, Se, Sr, Ti, U and V) in 1155 (82%) Hungarian drinking water sources, including surface water, bank filtered and groundwater sources. Parameters posing a risk to health (Se, V and U) were typically below the limit of quantification (LOQ), but higher concentrations (max. 7.0, 17 and 41 µg/L, respectively) may occur in confined locations. U exceeded the DWD parametric value in one water supply. Mg and Ca in the majority of the water supplies and Li in a small geographic area reached the concentration range assumed to be protective to health. Water sources were grouped in six clusters based on their elemental distribution, some of them also showing clear geographical patterns. Surface and groundwater sources were not differentiated by composition, with the exception of karstic waters (dominated by Ca and Mg). None of the investigated parameters are expected to be a source of public health concern on a national level, but local occurrences of U and Se should be investigated and managed on a case-by-case basis.