Highlights Novel three-bed, cascading-inlet bioreactor treated agricultural drainage from a 249-ha catchment. Nitrate removal rates and load reduction efficiencies were similar to those of traditional single-field bioreactors. Sedimentation problems reduced bed life; a sediment sensing and exclusion system solved them. This scale provides opportunities for centralized management and nutrient reduction verification. Abstract. Denitrifying bioreactors, a structural practice deployed at the field scale to meet water quality goals, have been underutilized and require additional evaluation at the small catchment scale. The objective of this study was to quantify the performance of a large, multi-bed denitrifying bioreactor system sized to treat agricultural drainage runoff (combined drainage discharge and surface runoff) from a 249-ha catchment. Three woodchip bioreactor beds, 7.6 m wide by 41 m long by 1.5 m deep, with cascading inlets, were constructed in 2016 in southern Minnesota, U.S. The beds received runoff for one water year from a catchment area that is 91% tile-drained row crops, primarily maize and soybeans. Initial woodchip quality differed among the three beds, affecting flow and nitrate removal rates. Bioreactor flow was unimpeded by sediment for twelve events from September 2016 to July 2017, during which time 55% of the discharge from the catchment was treated in the bioreactor beds. Average daily nitrate removal rates ranged from 2.5 to 6.5 g-N m-3 d-1 for the three bioreactor beds, with nitrate-N load removal of flow through the beds between 19% and 27%. When accounting for untreated by-pass flow, the overall nitrate-N removal of the multi-bed system was 12.5% (713 kg N). During high-flow events, incoming sediment clogged the reactor beds, decreasing their performance. There was 4,520 kg of sediment trapped in one bed, and evidence suggests the other two trapped a similar load. To solve this problem and prolong the bioreactor’s lifespan, we installed a shutoff gate that activated when inflow turbidity exceeded a threshold value. Finally, the findings indicate that catchment-scale denitrifying bioreactors can successfully remove nitrate load from agricultural runoff, but sediment-prevention measures may be required to extend the bioreactor's lifespan. Keywords: Bioreactor, Denitrification, Nitrate removal, Sedimentation, Subsurface drainage.