Dominant Scavengers Research Articles

Water soluble phenolics, flavonoids and anthocyanins extracted from jaboticaba berries using maceration with ultrasonic pretreatment

Jaboticaba is healthy and delicious berries rich in phenolic compounds, particularly flavonoids, anthocyanins and ellagitannins. The natural occurring polyphenols have been getting interested by food and pharmaceutical industries, mainly due to their remarkable pharmacological actions. Therefore, this study was focused on the extraction of water soluble phenolics from jaboticaba berries using maceration technique with and without ultrasonic pretreatment. A short period of ultrasonic treatment (30 min) prior to maceration could improve the extraction to recover total phenolic and anthocyanin content, especially from its thick fruit peel for 75% and 61%, respectively. About 4.5% - 8.5% and 8.6% - 9.4% of the total phenolics was flavonoids and anthocyanins, respectively. The phenolics were statistically correlated to different colorimetric antioxidant assays to postulate the plausible antioxidant pathway. Hierarchical clustering revealed that phenolics in jaboticaba extracts were the dominant scavengers against free, cationic and peroxyl radicals, specifically flavonoids and anthocyanins were likely to be reducing agents. Jaboticaba extracts were also found to have higher scavenging capacity against peroxyl radicals, and higher reducing power than that of Trolox. Mass screening by UPLC-MS/MS detected many phenolics including glycosylated cyanidins and delphinidins, as well as galloylated flavonoids, ellagitannins and phospholipids in the peel extract.

Trimethylamine N-Oxide (TMAO) and Trimethylamine (TMA) Determinations of Two Hadal Amphipods

Hadal trenches are a unique habitat with high hydrostatic pressure, low temperature and scarce food supplies. Amphipods are the dominant scavenging metazoan species in this ecosystem. Trimethylamine (TMA) and trimethylamine oxide (TMAO) have been shown to play important roles in regulating osmotic pressure in mammals, hadal dwellers and even microbes. However, the distributions of TMAO and TMA concentrations of hadal animals among different tissues have not been reported so far. Here, the TMAO and TMA contents of eight tissues of two hadal amphipods, Hirondellea gigas and Alicella gigantea from the Mariana Trench and the New Britain Trench, were detected by using the ultrahigh performance liquid chromatography–mass spectrometry (UPLC-MS/MS) method. Compared with the shallow water Decapoda, Penaeus vannamei, the hadal amphipods possessed significantly higher TMAO concentrations and a similar level of TMA in all the detected tissues. A higher level of TMAO was detected in the external organs (such as the eye and exoskeleton) for both of the two hadal amphipods, which indicated that the TMAO concentration was not evenly distributed, although the same hydrostatic pressure existed in the outer and internal organs. Moreover, a strong positive correlation was found between the concentrations of TMAO and TMA in the two hadal amphipods. In addition, evolutionary analysis regarding FMO3, the enzyme to convert TMA into TMAO, was also conducted. Three positive selected sites in the conserved region and two specific mutation sites in two conserved motifs were found in the A. gigantea FMO3 gene. Combined together, this study supports the important role of TMAO for the environmental adaptability of hadal amphipods and speculates on the molecular evolution and protein structure of FMO3 in hadal species.

Functional differences in scavenger communities and the speed of carcass decomposition.

Carcass decomposition largely depends on vertebrate scavengers. However, how behavioral differences between vertebrate scavenger species, the dominance of certain species, and the diversity of the vertebrate scavenger community affect the speed of carcass decomposition is poorly understood. As scavenging is an overlooked trophic interaction, studying the different functional roles of vertebrate species in the scavenging process increases our understanding about the effect of the vertebrate scavenger community on carcass decomposition. We used motion‐triggered infrared camera trap footages to profile the behavior and activity of vertebrate scavengers visiting carcasses in Dutch nature areas. We grouped vertebrate scavengers with similar functional roles. We found a clear distinction between occasional scavengers and more specialized scavengers, and we found wild boar (Sus scrofa) to be the dominant scavenger species in our study system. We showed that these groups are functionally different within the scavenger community. We found that overall vertebrate scavenger diversity was positively correlated with carcass decomposition speed. With these findings, our study contributes to the understanding about the different functional roles scavengers can have in ecological communities.

The Adaptive Evolution and Gigantism Mechanisms of the Hadal “Supergiant” Amphipod Alicella gigantea

Hadal trenches are commonly referred to as the deepest areas in the ocean and are characterized by extreme environmental conditions such as high hydrostatic pressures and very limited food supplies. Amphipods are considered the dominant scavengers in the hadal food web. Alicella gigantea is the largest hadal amphipod and, as such, has attracted a lot of attention. However, the adaptive evolution and gigantism mechanisms of the hadal “supergiant” remain unknown. In this study, the whole-body transcriptome analysis was conducted regarding the two hadal amphipods, one being the largest sized species A. gigantea from the New Britain Trench and another the small-sized species Bathycallisoma schellenbergi from the Marceau Trench. The size and weight measurement of the two hadal amphipods revealed that the growth of A. gigantea was comparatively much faster than that of B. schellenbergi. Phylogenetic analyses showed that A. gigantea and B. schellenbergi were clustered into a Lysianassoidea clade, and were distinct from the Gammaroidea consisting of shallow-water Gammarus species. Codon substitution analyses revealed that “response to starvation,” “glycerolipid metabolism,” and “meiosis” pathways were enriched among the positively selected genes (PSGs) of the two hadal amphipods, suggesting that hadal amphipods are subjected to intense food shortage and the pathways are the main adaptation strategies to survive in the hadal environment. To elucidate the mechanisms underlying the gigantism of A. gigantea, small-sized amphipods were used as the background for evolutionary analysis, we found the seven PSGs that were ultimately related to growth and proliferation. In addition, the evolutionary rate of the gene ontology (GO) term “growth regulation” was significantly higher in A. gigantea than in small-sized amphipods. By combining, those points might be the possible gigantism mechanisms of the hadal “supergiant” A. gigantea.

Scavengers reduce potential brucellosis transmission risk in the Greater Yellowstone Ecosystem

AbstractScavengers likely play an important role in ecosystem energy flow as well as disease transmission, but whether they facilitate or reduce disease transmission is often unknown. In the Greater Yellowstone Ecosystem, scavengers are likely to reduce the transmission and subsequent spread of brucellosis within and between livestock and elk by consuming infectious abortion materials, thereby removing the infectious agent from the landscape. We used remote cameras to monitor the time to removal of simulated abortion materials by scavengers at 264 sites from February to June in 2017 and 2018 and assessed the effects of habitat and land management on time to removal in southwest Montana. Time to removal of fetal materials decreased in grassland habitats ( = 2.9 d, credible interval = [1.8–5.0]) in comparison to sagebrush habitats ( = 5.4 d [3.4–9.3]) and forest habitats ( = 5.2 d [3.3–9.0]). In addition, there was an 88% probability that time to removal of fetal materials was slower at sites where mammalian scavengers were actively reduced ( = 6.5 d [3.4–12.8]) compared to sites with no scavenger reduction ( = 4.1 d [2.3–7.8]). Our research indicates that if elk and livestock are commingling during the brucellosis risk period, there is a 90% probability that abortion materials will be removed by scavengers within 16 d across all sites. Coyotes, red foxes, golden and bald eagles, Corvus spp., and turkey vultures were the dominant scavengers, removing 90% of the fetal materials. Actions to maintain the breadth and diversity of scavengers on the landscape are potential management options that could reduce disease transmission risk to livestock in a system where the wildlife reservoir is difficult to address.

Gut Microbial Divergence Between Three Hadal Amphipod Species from the Isolated Hadal Trenches.

Amphipods are the dominant scavenging metazoan species in the hadal trenches at water depths below 6,000 m. The gut microbiota have been considered to be contribution to the adaptation of deep-sea organisms; however, few comparative analyses of animal gut microbiota between different isolated hadal environments have been done so far. Here, we employed high-throughput 16S rRNA sequencing to compare the gut microbial taxonomic composition and functional potential diversity of three hadal amphipod species, Hirondellea gigas, Bathycallisoma schellenbergi, and Alicella gigantea, collected from the Mariana Trench, Marceau Trench, and New Britain Trench in the Pacific Ocean, respectively. Results showed that different community compositions were detected across all the amphipod specimens based on the analyses of alpha-diversity, hierarchical cluster tree, and PCoA (principal coordinate analysis). Moreover, almost no correlation was observed between genera overrepresented in different amphipods by microbe-microbe correlations analysis, which suggested that the colonization of symbionts were host-specific. At genus level, Psychromonas was dominant in H. gigas, and Candidatus Hepatoplasma was overall dominant in A. gigantea and B. schellenbergi. Comparison of the functional potential showed that, though three hadal amphipod species shared the same predominant functional pathways, the abundances of those most shared pathways showed distinct differences across all the specimens. These findings pointed to the enrichment of particular functional pathways in the gut microbiota of the different isolated trench amphipods. Moreover, in terms of species relative abundance, alpha-diversity and beta-diversity, there was high similarity of gut microbiota between the two A. gigantea populations, which dwelled in two different localities of the same hadal trench. Altogether, this study provides an initial investigation into the gut-microbial interactions and evolution at the hadal depths within amphipod. Each of these three amphipod species would be a model taxa for future studies investigating the influence habitat difference and geography on gut-microbial communities.

Visible light photodegradation of 2,4-dichlorophenol using nanostructured NaBiS2: Kinetics, cytotoxicity, antimicrobial and electrochemical studies of the photocatalyst

Removal of the hazardous and endocrine-disrupting 2,4-dichlorophenol (2,4-DCP) from water bodies is crucial to maintain the sanctity of the ecosystem. As a low bandgap material (1.37 eV), NaBiS2 was hydrothermally prepared and used as a potential photocatalyst to degrade 2,4-DCP under visible light irradiation. NaBiS2 appeared to be highly stable and remained structurally undeterred despite thermal variations. With a surface area of 6.69 m2/g, NaBiS2 has enough surface-active sites to adsorb the reactive molecules and exhibit a significant photocatalytic activity. In alkaline pH, the adsorption of 2,4-DCP on NaBiS2 appeared to decrease whereas, the acidic and neutral environments favoured the degradation. An increase in the photocatalyst dosage enhanced the degradation efficiency from 81 to 86 %, because of higher vacant adsorbent sites and the electrostatic attraction between NaBiS2 and 2,4-DCP. The dominant scavengers degraded 2,4-DCP by forming a coordination bond between chlorine's lone pair of electrons and the vacant orbitals of bismuth, following the order hole>OH > singlet oxygen. Being non-toxic to both natural and aquatic systems, NaBiS2 exhibits antifungal properties at higher concentrations. Finally, the electron-rich NaBiS2 is an excellent electrocatalyst that effectively degrades organic pollutants and is a promising material for industrial and environmental applications.

Diurnal and nocturnal scavenger communities differ at two shallow-water depths in an Irish marine lough

We report on still/video photographic studies in 2018/9 of diurnal and nocturnal benthic scavenging on carrion in shallow water (2 m and 12 m depths) within Lough Hyne (a biodiverse Irish sea lough) using natural light during replicated 6 h daytime deployments and dim red light (630 nm) during 6 h deployments at night. In 2018 at 2 m depth in the North Basin, bait was present throughout day-time deployments, showing little evidence of scavenging; scavenger species' richness and abundance were low. At night, baits disappeared or were skeletonised; they were scavenged by a significantly more abundant and species-rich scavenger guild. At 12 m depth in the same basin, baits were removed or skeletonised during day and night. This confirmed our hypothesis that scavengers avoid well-lit very shallow water during the day, probably to avoid predation. Multivariate analysis of 2018/19 still photo data (12 m depth) revealed pronounced and statistically significant separate clustering of day, night and basin abundance/species data, although overall species' richness values did not differ significantly. These analyses together reflected differences in species’ compositions associated with contrasting sediments, flow regimes and night/day. Nephrops norvegicus, Pagurus bernhardus and Crangon crangon were only found in the low flow rate North Basin; Homarus gammarus, Trigla sp., Callionymus lyra, Agonus, Tritia reticulata and Marthasterias glacialis were only found in the high flow rate South Basin. Most scavenger species foraged in both day and night (though in different proportions). However, prawns (Palaemon serratus) only appeared at night. Small mobile scavenging fish, small crabs and prawns arrived at baits within seconds to minutes, as did locally-abundant slow movers (e.g. anemones (Anthopleura ballii), whelks (T. reticulata)). These times are shorter than recorded in earlier studies in deeper water. Larger crustaceans (e.g. Cancer pagurus, H. gammarus) took tens of minutes to hours before arrival; similar times have previously been recorded in deeper water. Large crustacean scavengers (C. pagurus, Maja squinado, H. gammarus) took substantial quantities of bait during long feeding bouts, but catsharks (Scyliorhinus canicula) often took similar quantities in a few seconds. All of the dominant scavenger species are broad-spectrum omnivores; only one obligate scavenger species (Tritia reticulata) was present (only in South Basin) and consumed negligible quantities of bait.

Effects on carrion consumption in a mammalian scavenger community when dominant species are excluded

Carrion is a valuable resource exploited not only by obligate scavengers but also by a wide variety of facultative scavengers. These species provide several important ecosystem services which can suffer if the scavenger community composition is altered, thus reducing the ecosystem provided. We studied the response of the Mediterranean facultative scavenger community to the exclusion of larger scavenger species (red fox Vulpes vulpes, European badger Meles meles, and wild boar Sus scrofa) using an exclusion fence permeable to small scavenger species (mainly Egyptian mongoose Herpestes ichneumon, common genet Genetta genetta, and stone marten Martes foina). The exclusion of dominant facultative scavengers led to a significant reduction in the amount of carrion consumed and an increase in carrion available for smaller species and decomposers, over a longer period of time. Although carrion consumption by the non-excluded species increased inside the exclusion area relative to the control area, it was insufficient to compensate for the carrion not eaten by the dominant scavengers. Of the small scavenger species, only the Egyptian mongoose significantly increased its carrion consumption in the exclusion area, and was the main beneficiary of the exclusion of dominant facultative scavengers. Therefore, altering the facultative scavenger community in Mediterranean woodlands can reduce the efficiency of small carcass removal and benefit other opportunistic species, such as the Egyptian mongoose, by increasing the carrion available to them. This interaction could have substantial implications for disease transmission, nutrient cycling, and ecosystem function.

Metagenomic Insights Into the Structure and Function of Intestinal Microbiota of the Hadal Amphipods.

Hadal trenches are the deepest known areas of the ocean. Amphipods are considered to be the dominant scavengers in the hadal food webs. The studies on the structure and function of the hadal intestinal microbiotas are largely lacking. Here, the intestinal microbiotas of three hadal amphipods, Hirondellea gigas, Scopelocheirus schellenbergi, and Alicella gigantea, from Mariana Trench, Marceau Trench, and New Britain Trench, respectively, were investigated. The taxonomic analysis identified 358 microbial genera commonly shared within the three amphipods. Different amphipod species possessed their own characteristic dominant microbial component, Psychromonas in H. gigas and Candidatus Hepatoplasma in A. gigantea and S. schellenbergi. Functional composition analysis showed that “Carbohydrate Metabolism,” “Lipid Metabolism,” “Cell Motility,” “Replication and Repair,” and “Membrane Transport” were among the most represented Gene Ontology (GO) Categories in the gut microbiotas. To test the possible functions of “Bacterial Chemotaxis” within the “Cell Motility” category, the methyl-accepting chemotaxis protein (MCP) gene involved in the “Bacterial Chemotaxis” pathway was obtained and used for swarming motility assays. Results showed that bacteria transformed with the gut bacterial MCP gene showed significantly faster growths compared with the control group, suggesting MCP promoted the bacterial swimming capability and nutrient utilization ability. This result suggested that hadal gut microbes could promote their survival in poor nutrient conditions by enhancing chemotaxis and motility. In addition, large quantities of probiotic genera were detected in the hadal amphipod gut microbiotas, which indicated that those probiotics would be possible contributors for promoting the host’s growth and development, which could facilitate adaptation of hadal amphipods to the extreme environment.

Recolonizing carnivores: Is cougar predation behaviorally mediated by bears?

Conservation and management efforts have resulted in population increases and range expansions for some apex predators, potentially changing trophic cascades and foraging behavior. Changes in sympatric carnivore and dominant scavenger populations provide opportunities to assess how carnivores affect one another. Cougars (Puma concolor) were the apex predator in the Great Basin of Nevada, USA, for over 80 years. Black bears (Ursus americanus) have recently recolonized the area and are known to heavily scavenge on cougar kills. To evaluate the impacts of sympatric, recolonizing bears on cougar foraging behavior in the Great Basin, we investigated kill sites of 31 cougars between 2009 and 2017 across a range of bear densities. We modeled the variation in feeding bout duration (number of nights spent feeding on a prey item) and the proportion of primary prey, mule deer (Odocoileus hemionus), in cougar diets using mixed‐effects models. We found that feeding bout duration was driven primarily by the size of the prey item being consumed, local bear density, and the presence of dependent kittens. The proportion of mule deer in cougar diet across all study areas declined over time, was lower for male cougars, increased with the presence of dependent kittens, and increased with higher bear densities. In sites with feral horses (Equus ferus), a novel large prey, cougar consumption of feral horses increased over time. Our results suggest that higher bear densities over time may reduce cougar feeding bout durations and influence the prey selection trade‐off for cougars when alternative, but more dangerous, large prey are available. Shifts in foraging behavior in multicarnivore systems can have cascading effects on prey selection. This study highlights the importance of measuring the impacts of sympatric apex predators and dominant scavengers on a shared resource base, providing a foundation for monitoring dynamic multipredator/scavenger systems.

Can't bear the competition: Energetic losses from kleptoparasitism by a dominant scavenger may alter foraging behaviors of an apex predator

The interspecific interactions of apex predators are integral to the function of ecological communities, but most studies have focused on understanding their top down effects. Kleptoparasitism (the stealing of procured food) by dominant scavengers can have negative effects on populations and behaviors of apex predators. We captured 7 pumas (Puma concolor) and fitted them with GPS collars to investigate potential kill sites (n = 352), some of which we monitored with camera traps (n = 58). We analyzed whether observed kleptoparasitism by American black bears (Ursus americanus) affected puma energetics and foraging behavior. We found that black bears were the most frequent scavenger of puma kills (72.4%), and we documented bears scavenging puma kills during every month. The top model for bear detection of puma kills included prey size, temperature, and canopy cover, with bears more likely to scavenge from adult black-tailed deer (Odocoileus hemionus columbianus) carcasses in warmer temperatures and under dense canopy cover. When black bear scavenging occurred, pumas spent 22% less time at their kill and incurred energetic losses. In response, pumas shortened their inter-kill intervals by 1.3 days thus increasing their kill rates. Our results demonstrate how a dominant scavenger directly mediates the foraging behavior of an apex predator. These results suggest that community interactions do not necessarily start at the top in top-down systems, and the effects of predators on prey populations can only be understood within their respective ecological communities.

A cat in paradise: hunting and feeding behaviour of Eurasian lynx among abundant naive prey

Kill rates of predators typically increase when they come into contact with naive and abundant prey. Such a situation can lead to surplus killing or the occurrence of parallel kills (i.e. additional kills that predator makes while still consuming the carcass from the previous kill). However, there is limited information on the feeding behaviour of predators during such events and how they affect kill rates. Here we report on hunting and feeding behaviour of a male Eurasian lynx (Lynx lynx) that dispersed into a region where this apex predator had been absent for several decades. We also report on the kleptoparasitism by wild boar (Sus scrofa), which effects on lynx prey consumption have not yet been explored. We found 66 ungulates killed by the lynx, among which 39% were part of parallel kills. Compared to the single kills, lynx fed on parallel kills for 2.7-times longer, while the kill rate was 37% higher, resulting in one of the highest kill rates reported so far for male lynx in Europe. We did not detect differences in search times following single or parallel kills and the average distance between consecutive kills was similar in both kill types. We also recorded the highest kleptoparasitism rate by dominant scavengers on Eurasian lynx, as 48% of kills were usurped and consumed by the wild boars. Kleptoparasitism reduced the average time lynx was able to feed on prey for 52% compared to kills not found by wild boars. However, the lynx did not compensate for these losses by increasing the hunting effort, probably due to abundant naive prey available in the area.

Graphene oxide decorated nanoscale iron sulfide for highly efficient scavenging of hexavalent chromium from aqueous solutions

In this paper, a novel graphene oxide (GO) decorated nanoscale FeS composite (GO/FeS) combining both advantages of GO and FeS was synthesized and tested for the highly efficient scavenging of Cr(VI) from aqueous solutions. The as- synthesized materials were characterized by scanning electron microscopy-energy dispersive spectrometer (SEM-EDS), transmission electron microscopy (TEM), atomic force microscopy (AFM), Raman spectra and X-ray photoelectron spectroscopy (XPS) in detail. The results indicated that FeS nanoparticles were effectively decorated onto the surface of GO through −OH, CO, CO, and O=C–O functional groups, resulting in larger specific surface area and higher reactivity The nanocomposites displayed an enhanced Cr(VI) scavenging capacity, and the acidic conditions favored the Cr(VI) scavenging by GO/FeS. The kinetics of Cr(VI) scavenging on GO/FeS nanoparticles was in accordance with the pseudo-second order kinetic model, suggesting that chemical interaction is mainly responsible for Cr(VI) scavenging on GO/FeS. Furthermore, the Langmuir model fit the best, and qmax, i.e. the maximum scavenging capacity of Cr(VI) obtained from the Langmuir model reached 138.5 mg/g, Surface sorption and reduction were the dominant scavenging mechanisms for Cr(VI) by GO/FeS. The present study demonstrated the promise of GO/FeS as an effective scavenger for the remediation of Cr(VI) in groundwater environment.

Effect of mammalian mesopredator exclusion on vertebrate scavenging communities

Carrion is a valuable resource used by facultative scavengers across the globe. Due to conflicts with humans, many vertebrate scavengers have experienced population declines due to direct persecution or indirect effects of human activities. However, little is known about the implications of altered scavenger community composition on the fate and efficiency of carrion removal within ecosystems. In particular, mammalian mesopredators are efficient scavengers that are often subjected to control, thus, it is important to understand how the reduction of this scavenger guild influences the fate of carrion resources and efficiency of carrion removal within ecosystems. We evaluated the influence of the absence of mammalian mesopredators on vertebrate scavenging dynamics by comparing the efficiency of carrion removal and species composition at carrion between sites where we experimentally manipulated mesopredator abundance and paired control sites. Overall scavenging rates were high, even within our mesopredator exclusion sites (79% of carcasses). Despite the exclusion of an entire guild of dominant scavengers, we saw little effect on scavenging dynamics due to the extensive acquisition of carrion by avian scavengers. However, we observed a slight reduction in vertebrate scavenging efficiency in sites where mesopredators were excluded. Our results suggest vertebrate communities are highly efficient at carrion removal, as we saw a functional response by avian scavengers to increased carrion availability. These data provide insights into the impact of mesopredator control on food web dynamics, and build upon the growing body of knowledge investigating the role of vertebrate scavengers on ecosystem services provided through carrion removal.

Adductomics: a promising tool for the verification of chemical warfare agents' exposures in biological samples.

Humans are constantly exposed to a wide range of reactive and toxic chemicals from the different sources in everyday life. Identification of the exposed chemical helps in the detection and understanding the exposure associated adverse health effects. Covalent adducts of proteins and DNA formed after xenobiotics exposure may serve as readily measurable indicators of these exposures. Measuring the exposed chemicals with focus on adducts resulting from the nucleophilic interactions with blood proteins is useful in the development of diagnostic markers. Particularly, the most abundant proteins such as albumin and hemoglobin acts as dominant scavengers for many reactive chemicals in blood and can serve as excellent diagnostic candidates to determine the type of chemical exposure. This review focuses on the potential application of an adductomics approach for the screening of bimolecular adducts of chemical warfare agents (CWAs). Recent incidents of CWAs use in Syria, Malaysia, and the UK illustrate the continuing threat of chemical warfare agents in the modern world. Detection of CWAs and their metabolites in blood or in other body fluids of victims depends on immediate access to victims. Concentrations of intact CWAs in body fluids of surviving victims may decline rapidly within a few days. Certain CWAs, particularly nerve agents and vesicants, form covalent bonds with certain amino acids to form CWA-protein adducts. Proteins that are abundant in the blood, including albumin and hemoglobin, may carry these adducts longer after the original exposure. We searched MEDLINE and ISI Web of Science databases using the key terms "adductomics" "adducts of CWAs," "CWAs adducts detection in the biological samples," "protein adducts of CWAs," alone and in combination with the keywords "detection" "intoxication" "exposure" "adverse effects" and "toxicity." We also included non-peer-reviewed sources such as text books, relevant newspaper reports, and applicable Internet resources. We screened bibliographies of identified articles for additional relevant studies including non-indexed reports. These searches produced 1931 citations of which only relevant and nonduplicate citations were considered for this review. The analysis of biomedical samples has several purposes including detecting and identifying the type of chemical agent exposed, understanding the biological mechanism, assists in giving adequate treatment, determining the cause of death and providing evidence in a court of justice for forensic investigations. Rapid advances in the mass spectrometry to acquire high-quality data with greater resolution enabled the analysis of protein and DNA adducts of xenobiotics including CWAs and place the rapidly advancing 'adductomics' next to the other "-omics" technologies. Adductomics can serve as a powerful bioanalytical tool for the verification of CWAs exposure. This review mostly describes the protein adducts for nerve agents and vesicants, outlines the procedures for measuring adducts, and suggests the evolving (or future) use of adducts in the detection and verification of CWAs.

Investigation of Washing Mechanisms in Volume-Based Fractional Rain Samples in High Altitude Semirural Site by Determining Polycyclic Aromatic Hydrocarbons, Elemental Carbon, and Organic Carbon

Polycyclic aromatic hydrocarbons (PAHs), elemental carbon (EC), and organic carbon (OC) concentrations were investigated in five fractional rain samples collected in the high-altitude semirural site located at Black Sea Region in order to determine the dominant scavenging mechanism and source regions for these pollutants. The contribution of the secondary organic carbon (OCsec) to the OC concentration was calculated using EC tracer method and confirmed by the help of ozone data. The results showed that the ratio of OCsec to OC was the highest for the 8th April events (68–90%) and the lowest for the 15th April event (37%). The high correlations were found between combustion-related PAHs and EC. Distinct reddish-brown color on filters, dust forecast by BSC-DREAM8b, Sc/Ti ratio, and back trajectory measurements (HYSPLIT) were used to examine the effect of North Africa. Finally, factor analysis (factor loadings and factor scores) results were combined with all findings to determine the effect of local and long range transportation sources.

Newcastle disease sero and viro-prevalence in rural poultry in Chittagong, Bangladesh

Bangladesh experiences some of the highest malnutrition rates in the world, and efforts are being made to increase food security and overall health status. One of the largest constrains on increasing food security is endemic diseases among livestock and poultry populations. Newcastle Disease (ND) is one of these viral endemic diseases reducing food security. However, the sero- and viro-prevalence of ND has not been thoroughly studied in rural poultry in Bangladesh. Knowledge of farm management practices and their effect on ND sero and viro-prevalence is needed before interventions can occur, and efforts to improve the endemic state of ND cannot begin without a baseline study. This cross-sectional study randomly sampled 129 rural households with 245 chickens for the sero-prevalence and active infection rate of rural chickens in two selected upazilas (sub-districts) of the Chittagong district. ELISA was used for the detection of sero-prevalence, and cloacal samples were analyzed for ND presence using one-step RT-PCR. The aims of this study were to describe farmer demography, determine the ND sero-prevalence at the household and individual chicken level, estimate the proportionate ND prevalence at the individual chicken level, determine potential risk factors for ND sero-prevalence at the household level, and determine challenges farmers face with household chicken farming. The overall household level ND sero-prevalence based on ELISA was 31.8% (41/129) (95% CI: 23.9–40.6%), whereas the overall bird level ND sero-prevalence based on ELISA was 21.2% (52/245) (95% CI: 16.5–26.8%). ND prevalence based on RT-PCR was 12.5% (4/32) (95% CI: 3.5–29.0%). The odds of ND sero-positivity was significantly higher in farms belonging to Rangunia than in farms belonging to Anowara with an odds ratio (OR) of 7.8 (95% CI: 3.3–18.6%). The odds of ND sero-positivity was significantly lower in poultry house cleaning frequency of once or twice weekly compared with once daily cleaning (OR = 0.3; 95% CI: 0.1–0.8%). High cleaning frequency may produce excessive stress on poultry predisposing them to infection. Poultry rearing is different between Anowara and Rangunia. Anowara (coastal) scavenging areas become restricted because of regular tide flow allowing small fishes and other aquatic animals to be the dominant scavengers in Anowara. The incoming tide also removes viral reservoirs such as feces and dead birds that may otherwise be readily accessed by healthy chickens.

Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean's Deepest Point.

Amphipods are the dominant scavenging metazoan species in the Mariana Trench, the deepest known point in Earth's oceans. Here the gut microbiota of the amphipod Hirondellea gigas collected from the Challenger and Sirena Deeps of the Mariana Trench were investigated. The 11 amphipod individuals included for analyses were dominated by Psychromonas, of which a nearly complete genome was successfully recovered (designated CDP1). Compared with previously reported free-living Psychromonas strains, CDP1 has a highly reduced genome. Genome alignment showed deletion of the trimethylamine N-oxide (TMAO) reducing gene cluster in CDP1, suggesting that the "piezolyte" function of TMAO is more important than its function in respiration, which may lead to TMAO accumulation. In terms of nutrient utilization, the bacterium retains its central carbohydrate metabolism but lacks most of the extended carbohydrate utilization pathways, suggesting the confinement of Psychromonas to the host gut and sequestration from more variable environmental conditions. Moreover, CDP1 contains a complete formate hydrogenlyase complex, which might be involved in energy production. The genomic analyses imply that CDP1 may have developed adaptive strategies for a lifestyle within the gut of the hadal amphipod H.gigas. IMPORTANCE As a unique but poorly investigated habitat within marine ecosystems, hadal trenches have received interest in recent years. This study explores the gut microbial composition and function in hadal amphipods, which are among the dominant carrion feeders in hadal habitats. Further analyses of a dominant strain revealed genomic features that may contribute to its adaptation to the amphipod gut environment. Our findings provide new insights into animal-associated bacteria in the hadal biosphere.

Both rare and common species support ecosystem services in scavenger communities

AbstractAimRecent works on biodiversity–ecosystem functioning (BEF) relationships highlight abundance fluctuations of common species as more important for delivering ecosystem services than changes in species richness and composition in real‐world ecosystems. However, evidence on BEF relationships in natural ecosystems is still limited, especially for large vertebrates. Here, we aimed to disentangle the relative roles of species richness, composition and abundance of vertebrate scavenger communities in the ecological process of carcass elimination, a pivotal ecosystem service, in natural ecosystems. We evaluated the variability in the scavenging function across ecosystems, and examined the factors explaining it.LocationNine natural ecosystems, seven in Europe and two in Africa.Major taxa studiedVertebrates.Time period2006–2013.MethodsWe obtained BEF relationships from vertebrate scavengers consuming ungulate carcasses monitored through motion‐triggered remote cameras. We used the Price equation to tease out the relative roles of species richness, composition and abundance in the scavenging efficiency of vertebrates.ResultsWe recorded 46 vertebrate scavenging species, 30 in Spain and 16 in South Africa. Two main patterns drove BEF relationships. Species richness and composition drove carcass consumption in ecosystems where functionally dominant scavengers were rare, whilst context dependent effects (including species abundance) did so where functionally dominant species were common. Contrastingly to previous studies, abundance fluctuations in vertebrate scavengers were not exclusively related to common species but to the specialization of obligate scavengers (i.e., Gyps vultures) to rapidly gather at carcasses and to the top‐down control exerted by large predators.Main conclusionsRare and threatened species such as vultures and top predators become functionally key species in scavenging processes, highlighting that the delivery of ecosystem services still stands as a general argument for biodiversity conservation in vertebrate communities. Human persecution of vultures and top predators worldwide is expected to alter ecosystem functioning and services such as nutrient recycling or disease control.