The Sanjiang Lateral Collision Zone (SLCZ) in the SE margin of the Tibetan Plateau is a special area where several strike-slip faults intersect, resulting in strong deformation and frequent earthquakes. We employ seismic waveforms recorded by a dense temporary broadband array (SJ array) and regional permanent stations to construct more complete microseismic catalogs by the microseismic identification in the SLCZ. New microseismic catalogs effectively increase the number of small earthquakes, revealing the details of the fault structures and providing many more records for S-wave splitting (SWS) analysis. It provides with an uncommon opportunity to detect the detailed upper crustal anisotropy in the fault intersection zone of SLCZ and to dissect the influence of faults, such as the Lijiang-Xiaojinhe fault and Red river fault, on crustal deformation. The spatial distribution of SWS parameters suggests multiple disturbance mechanisms to the upper crustal anisotropy in the study zone. Spatial distribution of dual dominant polarization directions of fast S waves near the block boundary faults uncovers the stress-focus range. Strong deformation from SWS data indicates frequent local seismicity. It reveals the spatial upper crustal deformation indicated by SWS parameters is closely related to not only stress, fault and local structure, but also local seismicity.