Diversity Of Soil Microbial Communities Research Articles

Effects of different restoration stages on soil microbial community composition and diversity in Naolihe Wetland, China

Effects of different restoration stages on soil microbial community composition and diversity in Naolihe Wetland, China

Prairie restoration promotes the abundance and diversity of mutualistic arbuscular mycorrhizal fungi.

Predicting how biological communities assemble in restored ecosystems can assist in conservation efforts, but most research has focused on plants, with relatively little attention paid to soil microbial organisms that plants interact with. Arbuscular mycorrhizal (AM) fungi are an ecologically significant functional group of soil microbes that form mutualistic symbioses with plants and could therefore respond positively to plant community restoration. To evaluate the effects of plant community restoration on AM fungi, we compared AM fungal abundance, species richness, and community composition of five annually cultivated, conventionally managed agricultural fields with paired adjacent retired agricultural fields that had undergone prairie restoration 5-9 years prior to sampling. We hypothesized that restoration stimulates AM fungal abundance and species richness, particularly for disturbance-sensitive taxa, and that gains of new taxa would not displace AM fungal species present prior to restoration due to legacy effects. AM fungal abundance was quantified by measuring soil spore density and root colonization. AM fungal species richness and community composition were determined in soils and plant roots using DNA high-throughput sequencing. Soil spore density was 2.3 times higher in restored prairies compared to agricultural fields, but AM fungal root colonization did not differ between land use types. AM fungal species richness was 2.7 and 1.4 times higher in restored prairies versus agricultural fields for soil and roots, respectively. The abundance of Glomeraceae, a disturbance-tolerant family, decreased by 25% from agricultural to restored prairie soils but did not differ in plant roots. The abundance of Claroideoglomeraceae and Diversisporaceae, both disturbance-sensitive families, was 4.6 and 3.2 times higher in restored prairie versus agricultural soils, respectively. Species turnover was higher than expected relative to a null model, indicating that AM fungal species were gained by replacement. Our findings demonstrate that restoration can promote a relatively rapid increase in the abundance and diversity of soil microbial communities that had been degraded by decades of intensive land use, and community compositional change can be predicted by the disturbance tolerance of soil microbial taxonomic and functional groups.

Changes in soil microbial diversity under present land degradation scenario

Soil biological characteristics are drastically altered by land degradation. Degradation may reduce the number of microorganisms in the soil. Multiple activities and services provided by grassland ecosystems are impacted by land use change because of the resulting shifts in plant community composition and soil characteristics. A large body of research has examined the geographical and temporal dynamics of bacterial community structure and bacterial responses to human management in grassland ecosystems. As one of the most consequential environmental shifts occurring today, land use modification can affect microbial communities through modifying soil environmental parameters, nutritional conditions, and biological interactions. Whereas, soil microbes play crucial roles in nutrient cycling, organic matter decomposition, disease suppression, and overall soil health. Land degradation practices, such as deforestation, overgrazing, intensive agriculture, and improper land management, can disrupt the balance and diversity of soil microbial communities, leading to negative consequences for ecosystem functioning. To mitigate the negative effects of land degradation on soil microbial communities, sustainable land management practices should be adopted. These practices include soil conservation, reforestation, crop rotation, reduced tillage, organic farming methods, and proper nutrient management. By promoting soil health and restoring ecosystem processes, these approaches can help rebuild and maintain diverse and functional soil microbial communities.The purpose of this review is twofold: (1) to assess the diversity and composition of soil microorganisms in response to distinct land-use scenarios; and (2) to compare the relative importance of environmental factors driving these variations

Effects of different sizes of microplastic particles on soil respiration, enzyme activities, microbial communities, and seed germination

Microplastics (MPs) are emerging pollutants of terrestrial ecosystems. The impacts of MP particle size on terrestrial systems remain unclear. The current study aimed to investigate the effects of six particle sizes (i.e., 4500, 1500, 500, 50, 5, and 0.5 μm) of polyethylene (PE) and polyvinyl chloride (PVC) on soil respiration, enzyme activity, bacteria, fungi, protists, and seed germination. MPs significantly promoted soil respiration, and the stimulating effects of PE were the strongest for medium and small-sized (0.5–1500 μm) particles, while those of PVC were the strongest for small particle sizes (0.5–50 μm). Large-sized (4500 μm) PE and all sizes of PVC significantly improved soil urease activity, while medium-sized (1500 μm) PVC significantly improved soil invertase activity. MPs altered the soil microbial community diversity, and the effects were especially pronounced for medium and small-sized (0.5–1500 μm) particles of PE and PVC on bacteria and fungi and small-sized (0.5 μm) particles of PE on protists. The impacts of MPs on bacteria and fungi were greater than on protists. The seed germination rate of Brassica chinensis decreased gradually with the decrease in PE MPs particle size. Therefore, to reduce the impact of MPs on soil ecosystems, effective measures should be taken to avoid the transformation of MPs into smaller particles in soil environmental management.

Effects of Different Conditioners on Soil Microbial Community and Labile Organic Carbon Fractions under the Combined Application of Swine Manure and Straw in Black Soil

The return of straw and manure to agricultural fields can impact soil organic carbon (SOC) and biological properties. However, there is a lack of research on how using swine manure, maize straw, and various conditioners together affects soil bacterial and fungal populations. This study aimed to investigate six treatments, namely, only maize straw (S00), maize straw combined with swine manure (S0Z), maize straw combined with biochar and swine manure (SCZ), maize straw combined with boron slag and swine manure (SBZ), maize straw combined with biological agent and swine manure (SJZ), and maize straw combined with bio-organic fertilizer and swine manure (SFZ). The results showed that after the two-year return, all treatments increased the SOC content in 2023, which was 12.55–26.89% higher than S00, and the SCZ treatment significantly increased the soil organic carbon (SOC), dissolved organic carbon (DOC), easily oxidizable carbon (EOC), particulate organic carbon (POC), and microbial biomass carbon (MBC) content by 26.89%, 25.44%, 56.88%, 16.08%, and 43.54%, compared to S00. A redundancy analysis (RDA) showed that the continuous application of manure, maize straw, and conditioners has a positive impact on the diversity and abundance of soil microbial communities, enhancing the accumulation of soil carbon. Furthermore, our research revealed that soil fungi exhibited higher sensitivity in soil carbon composition following the addition of manure, straw, and conditioners to agricultural fields than bacteria. In conclusion, the addition of different conditioners to the fields is beneficial to biodiversity conservation from the perspective of achieving soil carbon storage and soil protection. Our findings suggested that the combination of maize straw, biochar, and swine manure has been proven to be the most effective treatment for increasing labile organic carbon fractions and enhancing the microbial community.

Impacts of AlaAT3 transgenic poplar on rhizosphere soil chemical properties, enzyme activity, bacterial community, and metabolites under two nitrogen conditions

ABSTRACT Poplar stands as one of the primary afforestation trees globally. We successfully generated transgenic poplar trees characterized by enhanced biomass under identical nutrient conditions, through the overexpression of the pivotal nitrogen assimilation gene, pxAlaAT3. An environmental risk assessment was conducted for investigate the potential changes in rhizosphere soil associated with these overexpressing lines (OL). The results show that acid phosphatase activity was significantly altered under ammonium in OL compared to the wild-type control (WT), and a similar difference was observed for protease under nitrate. 16SrDNA sequencing indicated no significant divergence in rhizosphere soil microbial community diversity between WT and OL. Metabolomics analysis revealed that the OL caused minimal alterations in the metabolites of the rhizosphere soil, posing no potential harm to the environment. With these findings in mind, we anticipate that overexpressed plants will not adversely impact the surrounding soil environment.

The Diversity and Composition of Soil Microbial Communities Differ in Three Land Use Types of the Sanjiang Plain, Northeastern China.

In recent years, the Sanjiang Plain has experienced drastic human activities, which have dramatically changed its ecological environment. Soil microorganisms can sensitively respond to changes in soil quality as well as ecosystem function. In this study, we investigated the changes in soil microbial community diversity and composition of three typical land use types (forest, wetland and cropland) in the Sanjiang Plain using phospholipid fatty acid analysis (PLFA) technology, and 114 different PLFA compounds were identified. The results showed that the soil physicochemical properties changed significantly (p < 0.05) among the different land use types; the microbial diversity and abundance in cropland soil were lower than those of the other two land use types. Soil pH, soil water content, total organic carbon and available nitrogen were the main soil physico-chemical properties driving the composition of the soil microbial community. Our results indicate that the soil microbial community response to the three different habitats is complex, and provide ideas for the mechanism by which land use changes in the Sanjiang Plain affect the structure of soil microbial communities, as well as a theoretical basis for the future management and sustainable use of the Sanjiang plain, in the northeast of China.

Polyaspartic Acid Urea Increased Maize Yield by Enhancing Leaf N Turnover Efficiency and Soil Microbial Diversity

The release rates of different nitrogen (N) fertilizers and their matching with plant demand determine crop yields. A field experiment was conducted to investigate the effect of using no fertilizer (N0), regular urea applied at rates of 180 kg ha−1 (N180) and 240 kg ha−1 (N240), controlled-release urea applied at a rate of 180 kg ha−1 (H180), and polyaspartic acid urea (PASP) on maize seed yield, soil microbial community diversity, and leaf N-converting enzymes. XianYu 688 was selected as the test maize variety. All cobs in the sample plots were collected per unit area to estimate maize yield. The enzyme-linked immunosorbent assay (ELISA) was used to determine leaf N-converting enzyme activities. Soil DNA was extracted using the Power Max Soil DNA Isolation Kit and subsequently sequenced using the Illumina HiSeq platform (PE 2500) to determine the microbial diversity and communities. The results showed that the highest seed yields were obtained under N240 and PASP180 treatments. The N-partial factor productivity of the PASP180 fertilizer was significantly higher than that of the other treatments. PASP treatment significantly increased maize seed yield due to the potential of storing more N in the ear leaves. Additionally, partial N productivity showed a significant positive correlation with the soil microbial Shannon, Chao1, and ACE indices, indicating that increased soil microbial diversity promoted N efficiency in maize. Further analysis revealed that PASP treatment increased seed yield by promoting leaf N-converting enzyme activity and soil microbial diversity. The results revealed that nitrate reductase (NR), glutamate synthase (GOGAT), and glutaminase (GLNS) enzyme activities in maize leaves were higher under the PASP treatment than under other fertilizer treatments. The PASP treatment significantly enhanced soil microbial diversity at different maize stages. Our study revealed the effects of using different N fertilizers on seed yield by examining their impact on soil microbial diversity and leaf N-converting enzyme activity. This study provides essential insights into maize production and soil fertility maintenance in the North China Plain.

Changes in the Soil Microbial Community Structure and Driving Factors during Post-Fire Recovery of the Larix gmelinii Rupr. Forest in Northern China

Fire is crucial for shaping northern forest ecosystems and can affect soil microbial community structure. However, there are few studies on the long-term effects of forest fire disturbance on soil microbial community diversity. In this study, we employed high-throughput sequencing of 16S rRNA and ITS1 to assess variations in the abundance of bacterial and fungal communities in dominant populations at 1, 6, and 11 years post-fire. Furthermore, a comprehensive analysis was conducted to examine the relationship between soil microenvironmental changes and soil microbial communities after fire disturbances, considering soil physicochemical properties, including bulk density, moisture content, pH, organic carbon, total nitrogen, ammonium nitrogen, nitrate nitrogen, available potassium, and available phosphorus. We found that fire significantly increased soil pH, NO3−-N, AP, and AK contents, in which the content of NO3−-N basically recovered to the pre-fire level at 11 years after fire. The soil SOC and TN contents decreased significantly 1 year after the fire. However, compared to the unfired site, the SOC content essentially recovered 11 years after the fire, while TN content was still significantly higher 11 years after fire. Furthermore, fire changed the diversity and richness of soil microbial communities to some extent. PCoA and NMDS analyses suggested that the bacterial community structures in soil samples from different burned areas with different recovery periods exhibited similarity. However, notable differences were observed in the fungal community structures between the 1-year and 6-year post-fire study sites when compared to the unburned control site. Bacterial communities predominantly comprised Proteobacteria, Actinobacteria, and Acidobacteria, while fungal communities were mainly dominated by Ascomycota and Basidiomycota. RDA confirmed the significant roles of SOC, TN, and NO3−-N in affecting the diversity of soil microbial communities. Therefore, our study not only enhances our understanding of the long-term effects of forest fire disturbances on soil properties and soil microbial community structure, but also provides insights for further utilizing and controlling carbon and nitrogen content to regulate soil microbial activity and accelerate the recovery process of burned areas.

Unraveling the Complex Dynamics of Soil Microbiome Diversity and Its Implications for Ecosystem Functioning: A Comprehensive Review

Soil microbiome diversity plays a pivotal role in shaping terrestrial ecosystems and the myriad functions. This comprehensive review delves into the intricate dynamics of soil microbial communities, exploring their composition, interactions, and responses to environmental factors. By synthesizing findings from cutting-edge research, we aim to elucidate the complex interplay between soil microbiome diversity and ecosystem functioning. We discuss the application of advanced techniques, such as high-throughput sequencing and metagenomic analysis, which have revolutionized our understanding of soil microbial diversity. The review highlights the influence of biotic and abiotic factors, including plant diversity, soil properties, climate, and land-use practices, on the structure and diversity of soil microbial communities. We examine the mechanisms through which soil microbes drive critical ecosystem processes, such as nutrient cycling, carbon sequestration, and plant productivity. The review also explores the resilience and adaptability of soil microbial communities in the face of global change pressures, such as climate change, land-use intensification, and biodiversity loss. We discuss the potential implications of altered soil microbiome diversity for ecosystem functioning and the provision of essential ecosystem services. Furthermore, we identify knowledge gaps and propose future research directions to advance our understanding of soil microbiome diversity and its role in maintaining healthy and productive ecosystems. This review provides a comprehensive framework for understanding the complex dynamics of soil microbiome diversity and underscores its critical importance in shaping the functioning and sustainability of terrestrial ecosystems in a changing world.

The effect of anaerobic digestate as an organic soil fertilizer on the diversity and structure of the indigenous soil microbial and nematode communities.

Anaerobic digestate is a popular soil additive which can promote sustainability and transition toward a circular economy. This study addresses how anaerobic digestate modifies soil health when combined with a common chemical fertilizer. Attention was given to soil microbes and, a neglected but of paramount importance soil taxonomic group, soil nematodes. A mesocosm experiment was set up in order to assess the soil's microbial and nematode community. The results demonstrated that the microbial diversity was not affected by the different fertilization regimes, although species richness increased after digestate and mixed fertilization. The composition and abundance of nematode community did not respond to any treatment. Mixed fertilization notably increased potassium (K) and boron (B) levels, while nitrate (NO3-) levels were uniformly elevated across fertilized soils, despite variations in nitrogen input. Network analysis revealed that chemical fertilization led to a densely interconnected network with mainly mutualistic relationships which could cause ecosystem disruption, while digestate application formed a more complex community based on bacterial interactions. However, the combination of both orchestrated a more balanced and less complex community structure, which is more resilient to random disturbances, but on the downside, it is more likely to collapse under targeted perturbations.

Effects of Intercropping and Nitrogen Application on Soil Fertility and Microbial Communities in Peanut Rhizosphere Soil

The intercropping of peanuts and sugarcane is a sustainable planting model that deserves in-depth research. For this study, two variables, i.e., intercropping status (peanut monocropping or sugarcane/peanut intercropping) and the level of nitrogen fertilization (low, medium, or high), were evaluated to analyze the effects of intercropping and nitrogen application on soil fertility and microbial communities in peanut rhizosphere soil. These analyses revealed that higher nitrogen application led to increased total nitrogen (TN), available nitrogen (AN), and soil organic matter (OM) levels in rhizosphere soil for both monocropped and intercropped peanuts, with a decrease in pH. Monocropped peanuts had higher TN, total phosphorus (TP), and total potassium (TK) levels compared to intercropped peanuts at the same nitrogen level but lower AN content and pH levels. The diversity of microbial communities in the rhizosphere soil of intercropped peanuts was significantly higher than that of monocropped peanuts under high levels of nitrogen fertilizer application. Higher levels of Gemmatimonadetes abundance were observed in intercropping rhizosphere soil, compared to that associated with peanut monocropping under low, middle, and high levels of nitrogen fertilizer application, whereas the opposite trend was observed for Chloroflexi abundance. Nitrospira abundance levels rose gradually in the monocropping treatment group, whereas the opposite trend was evident under intercropping conditions. Further analyses of nitrogen cycle-related genes demonstrated higher levels of nitrogen conversion cycle activity in intercropping peanut rhizosphere soil under low nitrogen levels, whereas nitrogen transformation cycle activity levels were higher in monocropping peanut rhizosphere soil under high levels of nitrogen amendment. It can be concluded that intercropping and nitrogen fertilizer application change the physical and chemical properties of soil, thus affecting the diversity and function of soil microbial communities in the peanut rhizosphere. These results offer a theoretical foundation for more efficient sugarcane/peanut intercropping systems.

Afforestation alters soil microbial community composition and reduces microbial network complexity in a karst region of Southwest China

AbstractSoil microbial community plays important roles in altering ecological processes and biogeochemical cycles in ecosystems. However, little is known about how afforestation influences the diversity, composition, and ecological network of soil microbial community in karst regions. In this study, soil samples were collected from one farmland (FL) and three afforestation lands including one bamboo forest (BA), one landscape tree planting forest (LAT), and one orange orchard (ORO) in a karst region of Southwest China. The bacterial and fungal communities were characterized using the high‐throughput sequencing approach, and soil properties including soil organic carbon, pH, soil water content, and soil total and available nutrient contents were measured under different land use treatments. Results showed that conversion from FL to BA and LAT significantly reduced the Shannon diversity of bacterial community. At the phylum level (top 10), genus level (top 30), and operational taxonomic units (OTUs) level, afforestation from FL resulted in significant changes in nine phyla, 24 genera, and 31.32% OTUs of bacterial community, and in three phyla, 13 genera, and 11.62% OTUs of fungal community. The number of nodes, number of negative edges, connectivity, average degree, and relative modularity of the microbial network under afforestation lands decreased by 9.33%–18.66%, 47.98%–72.75%, 0.45%–5.93%, 14.73%–22.29%, and 6.46%–23.50%, respectively, compared with FL. The soil organic carbon, total potassium and total phosphorus were identified as the key soil properties affecting the microbial community. Compared with LAT and ORO, the changes in bacterial and fungal communities under BA were more obvious because of the higher contents in soil organic carbon (13.48%) and total potassium (27.18%). In conclusion, afforestation significantly changed compositions and ecological network complexity of soil microbial community in karst regions, and conversion from FL to BA had stronger influences on the changes of soil microbial community than other afforestation lands in Southwest China. These findings provide the context necessary to evaluate the responses of soil microbial community to land use changes in karst regions.

Drought and vegetation restoration lead to shifts in soil microbial diversity and co-occurrence networks in California coastal prairie

Abstract Background and aims Both drought and vegetation restoration can have dramatic effects on plant community composition, but how they influence soil microbial community diversity, structure, and co-occurrence networks remain less well known. Methods To better understand the regulatory mechanisms of drought and vegetation restoration on soil microorganisms, we planted 12 native species in precipitation manipulation experimental plots in an invaded coastal grassland in California, USA. We measured soil bacterial and fungal community composition by amplicon sequencing, and quantified plant species richness and coverage in the third experimental year. Results Our results showed that drought significantly altered soil bacterial diversity and composition; however, neither drought nor vegetation restoration had significant effects on fungal diversity and composition. The control plots had the most cooperative interactions (greatest number of correlations) among bacterial and/or fungal species, while drought plots yielded the most complex co-occurrence network with the highest modularity and clustering coefficient. Structural equation modeling revealed that plant species richness, net gains, and soil moisture played dominant roles in shaping bacterial community structure. Drought and bacterial community structure directly affected fungal community structure. Plant dominant species cover, common species cover, and bacterial diversity were the key drivers in regulating the microbial co-occurrence network complex. Conclusion We conclude that soil bacterial and fungal communities differ in their responses to abiotic and biotic environmental changes, which may weaken the interspecies interactions among soil microorganisms.

Long-term push–pull cropping system shifts soil and maize-root microbiome diversity paving way to resilient farming system

BackgroundThe soil biota consists of a complex assembly of microbial communities and other organisms that vary significantly across farming systems, impacting soil health and plant productivity. Despite its importance, there has been limited exploration of how different cropping systems influence soil and plant root microbiomes. In this study, we investigated soil physicochemical properties, along with soil and maize-root microbiomes, in an agroecological cereal-legume companion cropping system known as push–pull technology (PPT). This system has been used in agriculture for over two decades for insect-pest management, soil health improvement, and weed control in sub-Saharan Africa. We compared the results with those obtained from maize-monoculture (Mono) cropping system.ResultsThe PPT cropping system changed the composition and diversity of soil and maize-root microbial communities, and led to notable improvements in soil physicochemical characteristics compared to that of the Mono cropping system. Distinct bacterial and fungal genera played a crucial role in influencing the variation in microbial diversity within these cropping systems. The relative abundance of fungal genera Trichoderma, Mortierella, and Bionectria and bacterial genera Streptomyces, RB41, and Nitrospira were more enriched in PPT. These microbial communities are associated with essential ecosystem services such as plant protection, decomposition, carbon utilization, bioinsecticides production, nitrogen fixation, nematode suppression, phytohormone production, and bioremediation. Conversely, pathogenic associated bacterial genus including Bryobacter were more enriched in Mono-root. Additionally, the Mono system exhibited a high relative abundance of fungal genera such as Gibberella, Neocosmospora, and Aspergillus, which are linked to plant diseases and food contamination. Significant differences were observed in the relative abundance of the inferred metabiome functional protein pathways including syringate degradation, L-methionine biosynthesis I, and inosine 5'-phosphate degradation.ConclusionPush–pull cropping system positively influences soil and maize-root microbiomes and enhances soil physicochemical properties. This highlights its potential for agricultural and environmental sustainability. These findings contribute to our understanding of the diverse ecosystem services offered by this cropping system where it is practiced regarding the system's resilience and functional redundancy. Future research should focus on whether PPT affects the soil and maize-root microbial communities through the release of plant metabolites from the intercrop root exudates or through the alteration of the soil's nutritional status, which affects microbial enzymatic activities.

Soil microbial community are more sensitive to ecological regions than cropping systems in alpine annual grassland of the Qinghai-Tibet Plateau.

Modern agriculture emphasizes the design of cropping systems using ecological function and production services to achieve sustainability. The functional characteristics of plants (grasses vs. legumes) affect changes in soil microbial communities that drive agroecosystem services. Information on the relationship between legume-grass mixtures and soil microorganisms in different ecological zones guides decision-making toward eco-friendly and sustainable forage production. However, it is still poorly understood how cropping patterns affect soil microbial diversity in alpine grasslands and whether this effect varies with altitude. To fill this gap in knowledge, we conducted a field study to investigate the effects of growing oats (Avena sativa L.), forage peas (Pisum sativum L.), common cornflower (Vicia sativa L.), and fava beans (Vicia faba L.) in monocultures and mixtures on the soil microbial communities in three ecological zones of the high alpine zone. We found that the fungal and bacterial community structure differed among the cropping patterns, particularly the community structure of the legume mixed cropping pattern was very different from that of monocropped oats. In all ecological zones, mixed cropping significantly (p < 0.05) increased the α-diversity of the soil bacteria and fungi compared to oat monoculture. The α-diversity of the soil bacteria tended to increase with increasing elevation (MY [2,513 m] < HZ [2,661 m] < GN [3,203 m]), while the opposite was true for fungi (except for the Chao1 index in HZ, which was the lowest). Mixed cropping increased the abundance of soil fungi and bacteria across ecological zones, particularly the relative abundances of Nitrospira, Nitrososphaera, Phytophthora, and Acari. Factors affecting the bacterial community structure included the cropping pattern, the ecological zone, water content, nitrate-nitrogen, nitrate reductase, and soil capacity, whereas factors affecting fungal community structure included the cropping pattern, the ecological zone, water content, pH, microbial biomass nitrogen, and catalase. Our study highlights the variation in soil microbial communities among different in alpine ecological regions and their resilience to cropping systems. Our results also underscore that mixed legume planting is a sustainable and effective forage management practice for the Tibetan Plateau.

Soil, Plant, and Microorganism Interactions Drive Secondary Succession in Alpine Grassland Restoration.

Plant secondary succession has been explored extensively in restoring degraded grasslands in semiarid or dry environments. However, the dynamics of soil microbial communities and their interactions with plant succession following restoration efforts remain understudied, particularly in alpine ecosystems. This study investigates the interplay between soil properties, plant communities, and microbial populations across a chronosequence of grassland restoration on the Qinghai-Tibet Plateau in China. We examined five succession stages representing artificial grasslands of varying recovery durations from 0 to 19. We characterized soil microbial compositions using high-throughput sequencing, enzymatic activity assessments, and biomass analyses. Our findings reveal distinct plant and microbial secondary succession patterns, marked by increased soil organic carbon, total phosphorus, and NH4+-N contents. Soil microbial biomass, enzymatic activities, and microbial community diversity increased as recovery time progressed, attributed to increased plant aboveground biomass, cover, and diversity. The observed patterns in biomass and diversity dynamics of plant, bacterial, and fungal communities suggest parallel plant and fungal succession occurrences. Indicators of bacterial and fungal communities, including biomass, enzymatic activities, and community composition, exhibited sensitivity to variations in plant biomass and diversity. Fungal succession, in particular, exhibited susceptibility to changes in the soil C: N ratio. Our results underscore the significant roles of plant biomass, cover, and diversity in shaping microbial community composition attributed to vegetation-induced alterations in soil nutrients and soil microclimates. This study contributes valuable insights into the intricate relationships driving secondary succession in alpine grassland restoration.

Remediation of cadmium-contaminated soil by biochar-loaded nano-zero-valent iron and its microbial community responses

At present, cadmium (Cd)-contaminated soil has been increasingly serious, which is adverse to soil health. In this study, biochar (BC) and biochar-loaded nanoscale zero-valent iron (nZVI@BC) were synthesized for remediation of Cd-contaminated soil. The effects of various factors including reaction time, dosage, nZVI loading on Cd fractionation, soil available iron, pH, CEC, and soil enzyme activity were comprehensively discussed. It can be concluded that nZVI@BC exhibited more excellent immobilization effect of Cd, and was positively correlated with dosage and reaction time, but negatively related to nZVI loading. As a result, 5% nZVI@BC(1:3) performed the best. Soil available iron, pH, and CEC were significantly enhanced with increasing nZVI loading. The immobilization mechanism was analyzed, including ion exchange, physical adsorption, surface complexation, electrostatic attraction as well as co-precipitation. Besides, nZVI@BC remarkably promoted soil catalase activity, but inhibited urease and FDA hydrolase activities. Furthermore, the effects and differences on the diversity, abundance, and species composition of soil microbial communities were deeply explored. The order of bacterial community richness in each group was CK > Cd > BC > nZVI@BC, and the bacterial community diversity was CK > nZVI@BC > Cd > BC. The greatest difference of species abundance composition was observed between nZVI@BC treatment group and the control. Additionally, forty-three biomarkers were screened, which primarily belonged to Proteobacteria, Gemmatimonadetes, Firmicutes, and Actinobacteria. This study will provide the profound theoretical basis for nZVI@BC remediation of Cd-contaminated soil and its microbial community responses.

Parental material and climate jointly determine the biomass and diversity of soil microbial communities along an elevational gradient on a subtropical karst mountain

AbstractAimClimate is widely understood to determine elevational patterns of soil microbial communities, whereas the effects of parental material are uncertain. Changes in the composition of parental materials along elevational transects could also affect soil microbial communities by influencing soil pH and nutrient availability. Here, we aim to illustrate the combined effects of climate and parental material on the biomass and composition of soil microbial communities along an elevational transect.LocationA subtropical forest on a karst mountain (Mt. Jinfo), China.TaxonBacteria and Fungi.MethodsWe use phospholipid fatty acid analysis (PLFA) and DNA amplicon high‐throughput sequencing to determine biomass and diversity patterns of soil microbial communities along a subtropical elevational gradient with contrasting parental materials (limestone and clasolite).ResultsWe observed that the microbial communities were more diverse (α‐diversity) and productive (biomass) on limestone than on clasolite. Additionally, we found that parental material played a role in shaping the composition (β‐diversity) of soil microbial communities along the elevational gradient. The impact of climate on soil microbial communities was found to be significant, albeit relatively weak. Structural equation models provided evidence for both direct and indirect effects of climate and parental material on microbial biomass and α‐diversity along the elevational gradient. Notably, the changes in soil pH, influenced by both parental material and climate, were identified as a key factor driving these effects.Main ConclusionsOur results underline the importance of both climate and parental material variations in space‐for‐time studies investigating soil microbial communities along elevational gradients.

Selenium Fertilizer Improves Microbial Community Structure and Diversity of Rhizospheric Soil and Selenium Accumulation in Tomato Plants

ABSTRACT Selenium (Se) is an essential microelement in living organisms, and has a beneficial effect on plant growth and stress tolerance at low concentrations. Se biofortification is commonly practiced in agriculture and is considered the best method for increasing human Se uptake. This study aimed to investigate the effects of Se fertilizer application on Se accumulation and microbial communities in the rhizospheric soil of tomato plants. A pot experiment with five treatments, i.e. (a) non-Se fertilizer as control (Ck) and Se fertilizer in the form of (b) sodium selenite (1 mg kg−1), (c) sodium selenite (5 mg kg−1), (d) sodium selenate (1 mg kg−1), and (e) sodium selenate (5 mg kg−1) was set up. The results showed that Se content in the tomato plants’ parts gradually increased with an increasing concentration of sodium selenate or selenite. Sodium selenate significantly increased tomato yield and improved Se accumulation in tomato plants. Se-treated treatments decreased the abundance of soil microbial community, and had no effect on the Chao1 and Shannon indices of them. Furthermore, Se application increased the relative abundance of Acidobacteriota and Actinobacteriota involved in the decomposition of organic matter, reducing Bacteriodota and Ascomyta, and significantly affected the bacterial community structure. Thus, Se fertilizer application increased the crop yield, improved Se accumulation, and the structure and diversity of rhizospheric soil microbial community in the tomato plants. In line with our experiment, 5 mg kg−1 concentration selenate is a reasonable way to harvest Se-enriched tomatoes.