Diversity Of Phytophthora Species Research Articles

Fishing for Phytophthora in watercourses of the highly urbanized Swiss Plateau

Phytophthora species are a cause for concern due to their invasive potential and the damage they can cause in agriculture, forestry, and natural ecosystems worldwide. Since water plays a crucial role in their dispersal, stream and river baiting is commonly used to survey risk areas for the presence of quarantine Phytophthora species. However, our understanding of the distribution and diversity of Phytophthora species in European watercourses remains incomplete. This study investigated the presence and diversity of Phytophthora species in Swiss watercourses, with a focus on the highly urbanized Swiss Plateau. Over the period 2012–2016, we sampled 32 watercourses, including major rivers and smaller streams. We isolated Phytophthora on selective media and sequenced the internal transcribed spacer region to identify the species. We recovered 241 Phytophthora isolates, representing 11 species from five major clades. Phytophthora clade 6 prevailed, with P. lacustris being the most common, found in 94.7% of the watercourses. The number of Phytophthora species per watercourse ranged from one to five, with no correlation to watercourse complexity. Our study reveals the presence of six previously unreported species in Switzerland, while known invasive species were not found. Watercourses appear less suited to detect invasive pathogenic Phytophthora species with a still limited distribution in the environment.

Phytophthora spp. diversity in commercial nursery stocks shown through examination of plant health practices for growers and traders of ornamental plants

Management of Phytophthora in commercial plant nurseries is important for biosecurity of traded plants, and monitoring of incidence of this important plant pathogen is a prerequisite to prevent its spread. Potted plants showing Phytophthora spp. symptoms, and nursery irrigation and runoff water, were sampled from a commercial and a non-commercial nursery in Tuscany, Italy. The samples were processed to detect Phytophthora spp., using baiting, and molecular identification of obtained isolates. High Phytophthora incidence was shown in the commercial nursery. Twelve Phytophthora spp. were isolated from potted plants or nursery runoff water. Individual symptomatic potted plants were infected with up to four pathogenic Phytophthora spp. The water sampled from nursery drainage canals had the greatest Phytophthora species diversity, with less diversity in ‘flow-through’ water samples (irrigation water percolated through potted plants) and samples from water puddles inside the nurseries. This study showed high incidence of Phytophthora in the commercial nursery, and associated risk of spread of these pathogens within and outside nursery operations. Lack of appropriate disease management probably increases occurrence of these pathogens.

Diversity of Phytophthora Species Involved in New Diseases of Mountain Vegetation in Europe with the Description of Phytophthora pseudogregata sp. nov.

New and emerging Phytophthora-related diseases in small trees, shrubs and herbaceous plants typical of subalpine vegetation have recently been observed in Italy and Slovenia. Diseased plants showed a complex symptomatology including foliar necrosis, fruit rot, shoot blight and branch bleeding cankers. Since little information is available about the aetiology of these aerial Phytophthora diseases, from 2019 to 2022, field surveys were conducted in 54 sites to define the occurrence, distribution and impact of the Phytophthora species on mountain vegetation. A total of 360 Phytophthora isolates were obtained from 397 samples collected from 33 herbaceous and woody host species. Based on phylogenetic analysis and morphometric data, 17 Phytophthora species were identified: P. pseudosyringae (201 isolates), P. plurivora (54), P. gonapodyides (21), P. ilicis (20), P. alpina (17), P. acerina (11), P. cactorum (7), P. pseudocryptogea (6), P. cambivora (5), P. idaei (4), P. psychrophila (3), P. bilorbang (2), P. chlamydospora (2), P. hedraiandra (1), P. kelmanii (1), P. rosacearum (1) and P. syringae (1). In addition, three isolates of a new putative Phytophthora species obtained from Alnus viridis, Juniperus communis and Rhododendron ferrugineum are described here as Phytophthora pseudogregata sp. nov. Overall, the results highlighted an unexpectedly high diversity of Phytophthora species in mountain areas, with many species able to cause aerial infections due to the production of caducous sporangia.

Occurrence of Phytophthora species in riparian stands of black alder (Alnus glutinosa) in Slovakia

AbstractDuring the monitoring period of alder decline phenomenon in Slovakia, indicative symptoms of Phytophthora diseases were observed in riverside stands in Slovakia. The study aimed to test the presence and diversity of Phytophthora species in declining alder stands. The samples were collected from six stands situated by rivers/streams in the central and eastern parts of Slovakia. Phytophthora plurivora and P. cactorum were detected in soil, root and water samples. The most isolated species was P. plurivora. Both Phytophthora species have been recognized in the literature as the perpetrators of black alder dieback together with other species, such as P. alni or P. polonica. To our knowledge, this is the first report of P. plurivora and P. cactorum in riverside stands with the main share of black alder in Slovakia.

Occurrence of Phytophthora ramorum and Other Phytophthora Species on Woody Ornamentals in Public Gardens and Parks in Northwestern Spain

Phytophthora ramorum is a harmful pathogen of ornamental and forest trees in Europe and North America. This pathogen has been recovered from nursery plants in Galicia (northwestern Spain) since 2003 and, despite carrying out the measures implemented by Commission Decision 2002/757/CE, including the eradication of infected plants and periodic inspections in nurseries, it is likely that P. ramorum has spread in landscaped green areas through planting of infected nursery stock. The aim of this work was to survey woody ornamental plants in public parks and gardens in Galicia for the presence of P. ramorum from 2011 to 2018 and to identify and characterize any other species of the genus found. Samples of leaves, twigs, and rhizosphere soil of symptomatic ornamental trees and shrubs were analyzed. Morphological, physiological, and molecular characteristics of 93 collect isolates enabled the identification of 13 species of Phytophthora. The greatest diversity of Phytophthora species was detected on Rhododendron and Camellia. P. ramorum was isolated from leaf samples of Camellia sp., Rhododendron sp ., and Viburnum tinus grown in three sites. To our knowledge, this is the first time that P. ramorum has been detected in landscaped green areas in Spain. These results suggest that regular inspections of symptomatic ornamental woody plants are necessary to control the spread of P. ramorum and other Phytophthora species.

New Reports of Phytophthora Species in Plant Nurseries in Spain.

The plant nursery industry has become an ideal reservoir for Phytophthora species and other soilborne pathogens. In this context, isolation from tissues and soil of ornamental and forest plants from nurseries in four regions of Spain was carried out. A high diversity of Phytophthora species was confirmed. Fourteen Phytophthora phylotypes (P. cactorum, P. cambivora, P. cinnamomi, P. citrophthora, P. crassamura, P. gonapodyides, P. hedraiandra, P. nicotianae, P. niederhauserii, P. palmivora, P. plurivora, P. pseudocryptogea, P. sansomeana, and Phytophthora sp. tropicalis-like 2) were isolated from over 500 plant samples of 22 species in 19 plant genera. Nine species were detected in water sources, two of them (P. bilorbang and P. lacustris) exclusively from water samples. P. crassamura was detected for the first time in Spain. This is the first time P. pseudocryptogea is isolated from Chamaecyparis lawsoniana and Yucca rostrata in Spain.

Phytophthora theobromicola sp. nov.: A New Species Causing Black Pod Disease on Cacao in Brazil.

Black pod disease, caused by Phytophthora species, is among the main limiting factors of cacao (Theobroma cacao L.) production. High incidence levels of black pod disease have been reported in Brazil, being induced by Phytophthora capsici, Phytophthora citrophthora, Phytophthora heveae, and Phytophthora palmivora. To assess the diversity of Phytophthora species affecting cacao in Brazil, 40 new isolates were obtained from cacao pods exhibiting symptoms of black pod disease collected in different smallholder farms in 2017. Further, ten cacao-infecting isolates morphologically identified as P. citrophthora and P. palmivora were molecularly characterized. The genomic regions beta-tubulin, elongation factor 1 alpha, heat shock protein 90, and internal transcribed spacer, and the mitochondrially encoded cytochrome c oxidase I and II genes were PCR-amplified and Sanger-sequenced from the cacao-infecting Phytophthora isolates. The morphological characterization and evaluation of the mycelial growth rates for the Phytophthora isolates were performed in vitro. Based on the molecular analysis and morphological comparisons, 19 isolates were identified as P. palmivora (clade 4). Interestingly, 31 isolates grouped together in the phylogenetic tree and were placed apart from previously known species in Phytophthora clade 2. Therefore, these isolates are considered as a new species herein referred to as Phytophthora theobromicola sp. nov., which produced papillate, semipapillate, and persistent sporangia on simple sporangiophores. The P. palmivora isolates were identified as A1 mating type by pairing each isolate with known A1 and A2 tester strains of P. capsici, but no oogonia/antheridia were observed when P. theobromicola was paired with the different tester strains. The P. theobromicola and P. citrophthora isolates showed higher mycelial growth rates, when compared to P. palmivora, on different media at 10, 15, and 20°C, but similar values were observed when grown on clarified CA media at 25 and 30°C. The pathogenicity tests carried out on pods of four cacao clones (CCN51, PS1319, Cepec2004, and CP49) showed significant variability among the isolates of both Phytophthora species, with P. theobromicola inducing higher rates of necrotic lesion expansion, when compared to P. palmivora. Here, two Phytophthora species were found associated with black pod disease in the state of Bahia, Brazil, and the previously undescribed P. theobromicola seems to be prevalent in field conditions. This is the first report of P. theobromicola on T. cacao. Also, these findings are crucial to improve the disease control strategies, and for the development of cacao materials genetically resistant to Phytophthora.

Diversity of Phytophthora Species Detected in Disturbed and Undisturbed British Soils Using High-Throughput Sequencing Targeting ITS rRNA and COI mtDNA Regions

Disease outbreaks caused by introduced Phytophthora species have been increasing in British forests and woodlands in recent years. A better knowledge of the Phytophthora communities already present in the UK is of great importance when developing management and mitigation strategies for these diseases. To do this, soils were sampled in “disturbed” sites, meaning sites frequently visited by the public, with recent and new plantings or soil disturbances versus more “natural” forest and woodland sites with little disturbance or management. Phytophthora diversity was assessed using high-throughput Illumina sequencing targeting the widely accepted barcoding Internal Transcribed Spacer 1 (ITS1) region of rRNA and comparing it with the mitochondrial cytochrome c oxidase I (COI) gene. Isolation of Phytophthora was run in parallel. Nothophytophthora spp. and Phytophthora spp. were detected in 79 and 41 of the 132 locations of the 14 studied sites when using ITS or COI, respectively. A total of 20 Phytophthora amplicon sequence variants (ASVs) were assigned to known Phytophthora species from eight clades (1a, 2, 2b, 3a, 5, 6b, 7a, 8b, 8c, 8d, 10a, and 10b) and 12 ASVs from six clades (1a, 2c, 3a, 3b, 6b, 7a, 8b, 8c, and 8d) when using ITS or COI, respectively. Only at two locations were the results in agreement for ITS, COI, and isolation. Additionally, 21 and 17 unknown Phytophthora phylotypes were detected using the ITS and COI, respectively. Several Phytophthora spp. within clades 7 and 8, including very important forest pathogens such as P. austrocedri and P. ramorum, were identified and found more frequently at “disturbed” sites. Additionally, eight ASVs identified as Nothophytophthora spp. were detected representing the first report of species within this new genus in Britain. Only three species not known to be present in Britain (P. castaneae, P. capsici, and P. fallax) were detected with the ITS primers and not with COI. To confirm the presence of these or any potential new Phytophthora species, sites should be re-sampled for confirmation. Additionally, there is a need to confirm if these species are a threat to British trees and try to establish any eradication measures required to mitigate Phytophthora spread in Britain.

Occurrence and diversity of Phytophthora species in declining broadleaf forests in western Ukraine

AbstractIn western Ukraine, forest decline and dieback of several broadleaved tree species have become increasingly evident during recent years, and surveys in some areas have shown symptoms indicative of Phytophthora infections. In this study, we aimed to determine the occurrence and diversity of Phytophthora species associated with several broadleaved tree species (Alnus glutinosa, Betula pendula, Castanea sativa, Fagus sylvatica and Quercus robur) from forest stands where dieback has been observed. Rhizosphere soil samples were collected from 14 forest stands during 2017 and 2018 and tested for the presence of Phytophthora species using morphological and molecular methods. Seven Phytophthora species (P. bilorbang, P. cactorum, P. gallica, P. gonapodyides, P. lacustris, P. plurivora and P. polonica), and two other clade six taxa were detected from the various forest types, several of which are probable agents responsible for decline. Four of the Phytophthora species (P. bilorbang, P. gallica, P. plurivora and P. polonica) have previously never been reported from broadleaf forests in Ukraine.

Isolation and pathogenicity of Phytophthora species from sessile oak (Quercus petraea (Matt.) Liebl.) stands in Slovakia

AbstractDuring the monitoring of oak decline phenomenon in Slovakia, symptoms indicative of Phytophthora diseases were observed in sessile oak stands in western Slovakia. The study aimed to test the presence and diversity of Phytophthora species associated with declining oak stands. From rhizosphere soil samples, Phytophthora plurivora, P. quercina and Pythium intermedium were detected. Soil inoculation tests with P. plurivora and P. quercina on 1‐year‐old oak plants inflicted damage to the root system, and significant differences in measured root parameters between the inoculated and control treatments after 5 months. Although more wilting symptoms were observed in P. plurivora—infected seedlings (7 out of 12 inoculated seedlings), P. quercina caused the highest amount of damage to root systems, and for example, fine root length was 1.6 times shorter compared to the control. To our knowledge, this is the first report of P. plurivora and P. quercina in sessile oak stands in Slovakia.

An Overview of Phytophthora Species Inhabiting Declining Quercus suber Stands in Sardinia (Italy)

Cork oak forests are of immense importance in terms of economic, cultural, and ecological value in the Mediterranean regions. Since the beginning of the 20th century, these forests ecosystems have been threatened by several factors, including human intervention, climate change, wildfires, pathogens, and pests. Several studies have demonstrated the primary role of the oomycete Phytophthora cinnamomi Ronds in the widespread decline of cork oaks in Portugal, Spain, southern France, and Italy, although other congeneric species have also been occasionally associated. Between 2015 and 2019, independent surveys were undertaken to determine the diversity of Phytophthora species in declining cork oak stands in Sardinia (Italy). Rhizosphere soil samples were collected from 39 declining cork oak stands and baited in the laboratory with oak leaflets. In addition, the occurrence of Phytophthora was assayed using an in-situ baiting technique in rivers and streams located throughout ten of the surveyed oak stands. Isolates were identified by means of both morphological characters and sequence analysis of internal transcribed spacer (ITS) regions of ribosomal DNA. In total, 14 different Phytophthora species were detected. Phytophthora cinnamomi was the most frequently isolated species from rhizosphere soil, followed by P. quercina, P. pseudocryptogea, and P. tyrrhenica. In contrast, P. gonapodyides turned out to be the most dominant species in stream water, followed by P. bilorbang, P. pseudocryptogea, P. lacustris, and P. plurivora. Pathogenicity of the most common Phytophthora species detected was tested using both soil infestation and log inoculation methods. This study showed the high diversity of Phytophthora species inhabiting soil and watercourses, including several previously unrecorded species potentially involved in the decline of cork oak forests.

Decline of European Beech in Austria: Involvement of Phytophthora spp. and Contributing Biotic and Abiotic Factors

A severe decline and dieback of European beech (Fagus sylvatica L.) stands have been observed in Austria in recent decades. From 2008 to 2010, the distribution and diversity of Phytophthora species and pathogenic fungi and pests were surveyed in 34 beech forest stands in Lower Austria, and analyses performed to assess the relationships between Phytophthora presence and various parameters, i.e. root condition, crown damage, ectomycorrhizal abundance and site conditions. In total, 6464 trees were surveyed, and Phytophthora-associated collar rot and aerial bark cankers were detected on 133 trees (2.1%) in 25 stands (73.5%). Isolations tests were performed from 103 trees in 27 stands and seven Phytophthora species were isolated from bleeding bark cankers and/or from the rhizosphere soil of 49 trees (47.6%) in 25 stands (92.6%). The most common species were P. ×cambivora (16 stands) followed by P. plurivora (eight stands) and P. cactorum (four stands), while P. gonapodyides, P. syringae, P. psychrophila and P. tubulina were each found in only one stand. Geological substrate had a significant effect on the distribution of P. ×cambivora and P. plurivora while P. cactorum showed no site preferences. In addition, 21 fungal species were identified on beech bark, of which 19 and five species were associated with collar rot and aerial bark cankers, respectively. Four tested fine root parameters showed differences between declining and non-declining beech trees in both Phytophthora-infested and Phytophthora-free stands. In both stand categories, ectomycorrhizal frequency of fine root tips was significantly higher in non-declining than in declining trees. This study confirmed the involvement of Phytophthora species in European beech decline and underlines the need of more research on the root condition of beech stands and other biotic and abiotic factors interacting with Phytophthora infections or causing beech decline in absence of Phytophthora.

Phytophthora Species Associated with Roots of Native and Non-native Trees in Natural and Managed Forests.

Roots act as a biological filter that exclusively allows only a portion of the soil-associated microbial diversity to infect the plant. This microbial diversity includes organisms both beneficial and detrimental to plants. Phytophthora species are among the most important groups of detrimental microbes that cause various soil-borne plant diseases. We used a metabarcoding approach with Phytophthora-specific primers to compare the diversity and richness of Phytophthora species associated with roots of native and non-native trees, using different types of soil inocula collected from native and managed forests. Specifically, we analysed (1) roots of two non-native tree species (Eucalyptus grandis and Acacia mearnsii) and native trees, (2) roots of two non-native tree species from an in vivo plant baiting trial, (3) roots collected from the field versus those from the baiting trial, and (4) roots and soil samples collected from the field. The origin of the soil and the interaction between root and soil significantly influenced Phytophthora species richness. Moreover, species richness and community composition were significantly different between the field root samples and field soil samples with a higher number of Phytophthora species in the soil than in the roots. The results also revealed a substantial and previously undetected diversity of Phytophthora species from South Africa.

Surprising low diversity of the plant pathogen Phytophthora in Amazonian forests.

The genus Phytophthora represents a group of plant pathogens with broad global distribution. The majority of them cause the collar and root-rot of diverse plant species. Little is known about Phytophthora communities in forest ecosystems, especially in the Neotropical forests where natural enemies could maintain the huge plant diversity via negative density dependence. We characterized the diversity of soil-borne Phytophthora communities in the North French Guiana rainforest and investigated how they are structured by host identity and environmental factors. In this little-explored habitat, 250 soil cores were sampled from 10 plots hosting 10 different plant families across three forest environments (Terra Firme, Seasonally Flooded and White Sand). Phytophthora diversity was studied using a baiting approach and metabarcoding (High-Throughput Sequencing) on environmental DNA extracted from both soil samples and baiting-leaves. These three approaches revealed very similar communities, characterized by an unexpected low diversity of Phytophthora species, with the dominance of two cryptic species close to Phytophthora heveae. As expected, the Phytophthora community composition of the French Guiana rainforest was significantly impacted by the host plant family and environment. However, these plant pathogen communities are very small and are dominated by generalist species, questioning their potential roles as drivers of plant diversity in these Amazonian forests.

The Genus Phytophthora (Peronosporales) in Argentina

Background and aims: The genus Phytophthora includes plant pathogens that affect a wide host range and cause severe damage and economic losses. The aim of this study was to achieve a more comprehensive knowledge of Phytophthora in Argentina. To this end, a review was carried out from the first reports in the late nineteenth century until March 2019.
 M&M: Information was taken from printed and on-line primary and secondary sources such as Proceedings of National and International Scientific Meetings, Bulletins from National Institutions and Universities, periodical Journals, books and data bases, and then analyzed and categorized.
 Results: The revision allowed updating the status of Phytophthora species recorded in the country, considering their geographical distribution, groups of crops affected, host-pathogen relationships, symptoms and nomenclature changes, as well as presenting a quick and comparative access to different subjects related to these pathogens. The results showed that, to date, 20 Phytophthora spp., one species affinis and one taxon affect 223 host-pathogen relationships in Argentina. The diversity of Phytophthora species in the world suggests that a larger number of species, still not cited, could be present in Argentina.
 Conclusions: Researchers specialized in the genus Phytophthora, molecular techniques and phylogenetic studies, may allow progressing in the accurate identification of the species and knowledge of their genetic variability.

Diversity of woody-host infecting Phytophthora species in public parks and botanic gardens as revealed by metabarcoding, and opportunities for mitigation through best practice

The diversity of Phytophthora species in soils collected from 14 highly disturbed sites in northern Britain, including botanic gardens, arboreta, public parks and other amenity woodland sites, was analysed using a molecular technique known as DNA metabarcoding. This technique enables the identification of multiple species present in a single environmental sample based on a DNA ‘barcode’ unique to each species. The genus Phytophthora was targeted in this study due to its increasing impact on Britain’s forests and woodlands over thelast 20 years. The introduction and spread of new Phytophthora species into Britain has been strongly associated with the movement of traded containerised plants, with a number of Phytophthora outbreaks reported on host trees located in public gardens and parks that had recently undergone planting or landscape regeneration schemes. This study was undertaken to assess the extent to which these highly disturbed sites with extensive planting regimes act as harbours for woody-host infecting Phytophthora species. A total of 23 Phytophthora species, the majority of which are known to be pathogens of woody hosts, were detected across the 14 sites sampled. These included four quarantine-regulated pathogens and four species notpreviously recorded in Britain. Also detected were three as-yet undescribed Phytophthora species and nine oomycete sequences with no clear match to any known genus. There was no effect of geographical location, elevation, underlying soil type, host family or host health status on the Phytophthora assemblages at each site, suggesting that the Phytophthora communities detected are likely to comprise introduced species associated with planting programmes. P. austrocedri and P. pseudosyringae were two of the most abundant Phytophthoraspecies detected, both of which cause serious damage to trees and are regarded as fairly recent introductions to Britain. The practical implications of the findings in terms of mitigating Phytophthora introduction, spread and impact at botanic gardens, arboreta and urban parks are discussed.

Diversity of Phytophthora Species Associated with Quercus ilex L. in Three Spanish Regions Evaluated by NGS

The diversity of Phytophthora species in declining Fagaceae forests in Europe is increasing in the last years. The genus Quercus is one of the most extended Fagaceae genera in Europe, and Q. ilex is the dominant tree in Spain. The introduction of soil-borne pathogens, such as Phytophthora in Fagaceae forests modifies the microbial community present in the rhizosphere, and has relevant environmental and economic consequences. A better understanding of the diversity of Phytophthora spp. associated with Q. ilex is proposed in this study by using Next Generation Sequencing (NGS) in six Q. ilex stands located in three regions in Spain. Thirty-seven Phytophthora phylotypes belonging to clades 1 to 12, except for clades 4, 5 and 11, are detected in this study, which represents a high diversity of Phytophthora species in holm oak Spanish forests. Phytophthora chlamydospora, P. citrophthora, P. gonapodyides, P. lacustris, P. meadii, P. plurivora, P. pseudocryptogea, P. psychrophila and P. quercina were present in the three regions. Seven phylotypes could not be associated with known Phytophthora species, so they were putatively named as Phytophthora sp. Most of the detected phylotypes corresponded to terrestrial Phytophthora species but aquatic species from clades 6 and 9 were also present in all regions.

Botanical gardens provide valuable baseline Phytophthora diversity data

Phytophthora species are important plant pathogens especially due to their ability to invade and change ecosystems. However, information regarding their diversity and distribution is not available in many parts of the world. In these areas, surveys of botanical gardens can provide opportunities to detect novel plant-microbe interactions on both indigenous and exotic plants. Three botanical gardens and one historical urban garden in the Western Cape Province of South Africa were surveyed to establish baseline information of Phytophthora species diversity in the Cape Floristic Region. Eight described species (P. amnicola, P. asparagi, P. capensis, P. cinnamomi, P. chlamydospora, P. lacustris, P. multivora and P. tropicalis), the known but as yet unnamed P. sp. emzansi and 3 putative hybrids were recovered. Forty eight of 103 samples collected were positive for Phytophthora species and P multivora was the most frequently isolated species. Three species (P. amnicola, P. asparagi and P. tropicalis) had not previously been reported in South Africa, although hybrid progeny of P. amincola had been found in two previous studies. These results highlight the value of botanical gardens as areas for baseline data collection and early warning systems.

Metabarcoding reveals a high diversity of woody host-associated Phytophthora spp. in soils at public gardens and amenity woodlands in Britain.

Forests and woodlands worldwide are being severely impacted by invasive Phytophthora species, with initial outbreaks in some cases occurring on host trees located in public parks and gardens. These highly disturbed sites with diverse planting practices may indeed act as harbours for invasive Phytophthora pathogens which are particularly well adapted to surviving in soil. High throughput Illumina sequencing was used to analyse Phytophthora species diversity in soil samples collected from 14 public garden/amenity woodland sites in northern Britain. Bioinformatic analyses revealed some limitations to using internal transcribed spacer as the barcode region; namely reporting of false positives and ambiguous species matches. Taking this into account, 35 distinct sequences were amplified across the sites, corresponding to 23 known Phytophthora species as well as twelve oomycete sequences with no match to any known Phytophthora species. Phytophthora pseudosyringae and P. austrocedri, both of which cause serious damage to trees and are regarded as fairly recent introductions to Britain, were the two most abundant Phytophthora species detected. There was no evidence that any of the detected Phytophthora species were more associated with any one type of host, healthy or otherwise. This study has demonstrated the ubiquity and diversity of Phytophthora species endemic in highly managed, extensively planted soil environments in Britain. Suggested improvements to the methodology and the practical implications of the findings in terms of mitigating Phytophthora spread and impact are discussed.

Increased diversity of Phytophthora species in Fraser fir Christmas tree plantations in the Southern Appalachians

ABSTRACTPhytophthora root rot (PRR) disease afflicts significant economic losses to the Fraser fir Christmas tree industry. In previous surveys conducted in 1972 and from 1997 to 1998 in North Carolina, the incidence of PRR was ∼9.5% with Phytophthora cinnamomi identified as the predominant causal species isolated from infected roots of Fraser fir. Due to increased use of out-of-state planting stock since 2000, we suspected increased diversity of Phytophthora species. During 2014, we surveyed Fraser fir Christmas tree plantations in the Southern Appalachians of North Carolina, Tennessee and Virginia to determine the occurrence of pathogenic root-rotting species of Phytophthora. A weighted sampling strategy based on Christmas tree acreage was deployed to collect symptomatic Fraser fir roots from 103 commercial production fields in 14 counties. Six species of Phytophthora were isolated from infected roots sampled from 82 sites in 13 counties. Phytophthora cinnamomi, P. cryptogea and P. pini represented 70.3%, 23.1% and 1.1% of the 91 isolates. Phytophthora citrophthora, P. europaea and P. sansomeana accounted for the remaining 5.5% of the isolates and have not been identified in previously published Fraser fir surveys conducted in the region. The pathogenicity of P. citrophthora on Fraser fir was confirmed based on completion of Koch’s postulates.