Bat Diversity Research Articles

Mountains host significantly more data deficient and threatened bat species than lowlands

AbstractMountains harbour one third of the world’s biodiversity and much of it is under increasing anthropogenic pressure. Yet, global assessments of the occurrence, and threat status of most mountain taxa, especially elusive ones are lacking, thereby hindering conservation and research prioritisation. In this study, we synthesise the distribution and conservation status of bats, a species rich taxon on mountains. By using data on geographical and elevational distribution ranges from the International Union for Conservation of Nature (IUCN), we examined bat species richness on mountains, species that predominantly occur in mountains (‘mountain dwelling species’), and those restricted to upper montane and alpine regions within mountains (‘highland dwelling species’). We also used published trait datasets to investigate the traits that are associated with mountain dwelling in bats. Globally, we identified 148 mountain dwelling and 46 highland dwelling bat species. Bat diversity is highest in the Northern Andes and Guiana Highlands. The mountain dwelling nature of bat species was found to be significantly associated with biogeographic realm. Importantly, our results show that mountain dwelling species are proportionately more data deficient than species that predominantly occur in lowlands. Additionally, highland dwelling species are proportionately more threatened than lowland species. Our results highlight a significant dearth of knowledge on mountain dwelling bat species. We conclude that more research is needed for bats specialised on mountain ecosystems. Our results draw attention towards improving the knowledge and protection of bat species that occur predominantly at high elevations across the world.

DNA metabarcoding analyses reveal fine-scale microbiome structures on Western Canadian bat wings.

Microbiomes play important roles in host health. White-nose syndrome (WNS), a fungal infection of bat wings and muzzles, has threatened bat populations across North America since 2006. Recent research suggest that the skin microbiome of bats may play a significant role in bat's susceptibility to WNS. However, relatively little is known about the skin microbiome composition and function in bats in Western Canada, a region with a high diversity of bats, but WNS has yet to be a major issue. Here, we revealed high bacterial and fungal diversities on the skin of three common bat species in Lillooet, British Columbia, including several highly prevalent microbial species that have been rarely reported in other regions. Our analyses showed fine-scale structures of bat wing microbiome based on local sites and bat species. The knowledge obtained from WNS-naïve bat populations in this study may help develop mitigation and management strategies against WNS.

The state of the bats in North America.

The world's rich diversity of bats supports healthy ecosystems and important ecosystem services. Maintaining healthy biological systems requires prompt identification of threats to biodiversity and immediate action to protect species, which for wide-ranging bat species that span geopolitical boundaries warrants international coordination. Anthropogenic forces drive the threats to bats throughout North America and the world. We conducted an international expert elicitation to assess the status of 153 bat species in Canada, the United States, and Mexico. We used expert assessment to determine the conservation status, highest impact threats, and recent population trends for these species. We found that 53% of North American bat species have moderate to very high risk of extinction in the next 15 years. The highest impact threats varied with species and country, and four IUCN threat categories had the greatest overall impacts: Climate Change, Problematic Species (including disease), Agriculture, and Energy Production. Experts estimated that 90% of species assessed had decreasing population trends over the past 15 years, demonstrating the need for conservation action. Although the state of North American bats is concerning, we identify threats that can be addressed through internationally collaborative, proactive, and protective actions to support the recovery and resilience of North American bat species.

Diversidad y conservación de los murciélagos de Cusco, Perú

In this work, we present an updated list of bats from the Cusco department, based on the review of scientific collections, databases, and published research. Our data show that Cusco is one of the regions with the highest bat diversity in the country, recording seven families, 55 genera, and 114 species, nearly 60% of those recorded for Peru. This diversity includes two of the nine endemic species registered in Peru: Mormopterus phrudus and Anoura javieri. According to Peruvian legislation, five species are categorized as threatened, while six species are listed by the International Union for Conservation of Nature (IUCN). Additionally, 10 species are considered common, and 27 are classified as rare. The density map of records indicates that the highest concentration of records is in the La Convención province and identifies four areas with information gaps: 1) Southeast of Cusco, 2) Southwest, encompassing the provinces of Chumbivilcas and Espinar, 3) Northwest of La Convención, and 4) Northeast of La Convención. The list provides species data at the provincial level, highlighting information gaps and updates on species distribution across ecoregions, besides is included the distribution maps of all species.

Extensive longevity and DNA virus-driven adaptation in nearctic Myotis bats.

The rich species diversity of bats encompasses extraordinary adaptations, including extreme longevity and tolerance to infectious disease. While traditional approaches using genetic screens in model organisms have uncovered some fundamental processes underlying these traits, model organisms do not possess the variation required to understand the evolution of traits with complex genetic architectures. In contrast, the advent of genomics at tree-of-life scales enables us to study the genetic interactions underlying these processes by leveraging millions of years of evolutionary trial-and-error. Here, we use the rich species diversity of the genus Myotis - one of the longest-living clades of mammals - to study the evolution of longevity-associated traits and infectious disease using functional evolutionary genomics. We generated reference genome assemblies and cell lines for 8 closely-related (∼11 MYA) species of Myotis rich in phenotypic and life history diversity. Using genome-wide screens of positive selection, analysis of structural variation and copy number variation, and functional experiments in primary cell lines, we identify new patterns of adaptation in longevity, cancer resistance, and viral interactions both within Myotis and across bats. We find that the rapid evolution of lifespan in Myotis has some of the most significant variations in cancer risk across mammals, and demonstrate a unique DNA damage response in the long-lived M. lucifugus using primary cell culture models. Furthermore, we find evidence of abundant adaptation in response to DNA viruses, but not RNA viruses, in Myotis and other bats. This is in contrast to these patterns of adaptation in humans, which might contribute to the importance of bats as a reservoir of zoonotic viruses. Together, our results demonstrate the utility of leveraging natural variation to understand the genomics of traits with implications for human health and suggest important pleiotropic relationships between infectious disease tolerance and cancer resistance.

Conservation gaps for Brazilian bats, limited protection across conservation units and the importance of the indigenous lands.

In Brazil, there is 13% of the world's bat diversity, is the second most diverse group of mammals, playing a crucial role in providing ecosystem services that benefit humans. However, anthropogenic disturbances exacerbate processes of species extinction, shifts in geographic distributions, and phenological changes, despite efforts to safeguard biodiversity through the creation of Conservation Units and Indigenous Lands. Moreover, gaps in taxonomic knowledge and challenges related to species distribution hinder the effective implementation of conservation strategies in protected areas. This study assesses the contribution of Brazilian Conservation Units (both Full Protection and Sustainable Use) and Indigenous Lands to the conservation of bat species and their ecosystem services. It also presents maps illustrating species richness by trophic guilds and threat classification according to IUCN, including species listed as Data Deficient. The findings reveal low percentages of potential bat distribution areas within these protected regions, especially for insectivorous, nectarivorous, and frugivorous bats in the Cerrado biome, which are classified as Near Threatened. Additionally, the highest bat species richness was observed in the Amazon and Atlantic Forest biomes.

Response of phyllostomid bat diversity to tree cover types in North-western Ecuador

Agricultural activities affect tropical forest biodiversity; however, some bat species can survive under these anthropogenic changes. We described the characteristics of phyllostomid bat assemblages in tree covers located in 48 plots among four agricultural landscapes of North-western Ecuador. Bats were captured with mist nets installed at a ground level reaching three meters’ height. For each of the plots, we installed a mist net in four types of tree cover (polyspecific live fences, monospecific live fences, cacao plantations, and isolated trees in pastures). We captured 250 phyllostomid bats belonging to 16 species with a trapping effort of 19,200 m2 of net coverage. Polyspecific live fences showed significant differences in relative abundance, richness, and diversity of phyllostomid bats compared to the other three. Frugivorous and nectarivorous guilds were the most abundant, and also exhibited the highest richness among other guilds present in agricultural landscapes. In addition, frugivorous, and nectarivorous guilds increase their abundance and richness in agricultural landscapes, while the animalivorous guild is negatively affected. We recommend installing polyspecific live fences in tropical production systems to support the conservation of phyllostomid bats. We conclude that living fences composed of various plant species favour the abundance, richness, and diversity of phyllostomid bats.

Acoustic study of urban bat diversity in Veliko Tarnovo, Bulgaria

Urbanisation presents both challenges and opportunities for bat populations. Understanding the composition and distribution of urban bat species is the first step toward their effective conservation. However, comprehensive studies on urban bat diversity remain scarce in Bulgaria. To address this gap, we conducted a year-long acoustic survey on five different habitats in the urbanised territory of Veliko Tarnovo. Our study identified the presence of eight bat species and other distinct acoustic groups within the urban environment. Bats were found to utilise various habitats across the urban landscape. Although the activity was highest during May and September, bats remained active all year round, including the winter. Our study provides insights into synanthropic bats’ seasonal and microhabitat-dependent use of urban areas. These findings will establish a baseline for future research focusing on habitat preferences, population dynamics, and interactions with urbanisation. Such research is essential for the effective management and conservation of bat populations in urban environments.

Bats generate lower affinity but higher diversity antibody responses than those of mice, but pathogen-binding capacity increases if protein is restricted in their diet.

Bats are reservoirs of many zoonotic viruses that are fatal in humans but do not cause disease in bats. Moreover, bats generate low neutralizing antibody titers in response to experimental viral infection, although more robust antibody responses have been observed in wild-caught bats during times of food stress. Here, we compared the antibody titers and B cell receptor (BCR) diversity of Jamaican fruit bats (Artibeus jamaicensis; JFBs) and BALB/c mice generated in response to T-dependent and T-independent antigens. We then manipulated the diet of JFBs and challenged them with H18N11 influenza A-like virus or a replication incompetent Nipah virus VSV (Nipah-riVSV). Under standard housing conditions, JFBs generated a lower avidity antibody response and possessed more BCR mRNA diversity compared to BALB/c mice. However, withholding protein from JFBs improved serum neutralization in response to Nipah-riVSV and improved serum antibody titers specific to H18 but reduced BCR mRNA diversity.

Bartonella spp. in bats from the Brazilian Amazon Forest.

Despite the great diversity of bats (64 species) in the State of Acre, northwestern Brazil, there are no studies on occurrence and diversity of Bartonella spp. in bats in this region. The present study investigated the occurrence and molecular identity of Bartonella spp. in spleen samples (n = 271) from bats of 30 different species from this region, within the Amazon biome. Twenty-one out of 208 (10.1%) samples positive in the PCR for the mammalian gapdh endogenous genes were positive in the qPCR for Bartonella spp. based on the nuoG gene. The two gltA Bartonella genotypes detected grouped with those previously identified in bats from other locations, expanding the diversity of genotypes associated with bats. This study provided the first molecular evidence of the presence of Bartonella spp. in bats in the state of Acre and in bats of the species Lophostoma silvicolum, Vampyressa thyone, Tonatia saurophila and Phyllostomus elongatus.

Fungal and bat diversities along a landscape gradient in central Mexico.

Species interactions between bats and fungi are poorly known. We documented the association between fungal and bat diversities along a landscape gradient. Ten, eight, and seven bat species were captured in conserved, semi-conserved, and urban sites, respectively. Eptesicus fuscus, Myotis ciliolabrum and Corynorhinus townsendii were the most abundant in conserved and semi-conserved sites. E. fuscus, Myotis velifer, and Lasiurus cinereus were abundant in urban sites. C. townsendii was the least abundant bat. A total of 15 cultivated fungi genera included the fungal diversity in bats, of which nine fungi genera were shared along the landscape gradient. Penicillium and Aspergillus were the most abundant genera, and Aureobasidium, Bispora, Stachybotrys, and Verticillium were only documented in the conserved sites. We observed a higher fungal diversity associated with bat species along this landscape gradient. The individual site-based accumulation curves of fungal diversity showed significant decreasing values along the conserved, semi-conserved, and urban sites, respectively. In conserved and urban sites, M. californicus and M. velifer showed the highest fungal diversity, respectively. E. fuscus was associated to the fungi genera Scopulariopsis, Alternaria, Penicillium and Beauveria; L. cinereus to Cladosporium and Aspergillus, and M. velifer to Alternaria sp1, Bispora and Trichoderma. Conserved sites showed both high bat and fungal diversities [species richness and abundance] compared to semi-conserved and urban sites. More studies associating bat and fungal diversities in other ecosystems are needed to corroborate this pattern.

Taxonomic, Functional, and Phylogenetic Diversity of Bats in Urban and Suburban Environments in Southern México

Urbanization is one of the leading causes of habitat loss, which has increased significantly in tropical regions in recent years, leading to the loss of species, their ecological functions, and evolutionary history. To determine the effect of urbanization on the diversity of bat communities in urban and suburban environments, we analyzed the α and β taxonomic, functional, and phylogenetic diversities at four sites along urbanization gradients surrounding a rapidly expanding city (Oaxaca City) in southern Mexico. We recorded bats using conventional techniques such as mist nets and acoustic monitoring. We calculated the diversity of bats in four sites with different urbanization conditions: urban (1), suburban (1), and rural (2). To assess the degree of total differentiation and components of bat turnover and nestedness between sites, we calculated the β taxonomic, functional, and phylogenetic diversities. A total of 33 bat species were recorded. The highest taxonomic and functional diversity was observed in the Center of Oaxaca (the site with the highest level of urbanization). In contrast, the highest phylogenetic diversity was found in the West (the site with the lowest level of urbanization). The total β taxonomic diversity was higher than the functional and phylogenetic diversity. Regarding the contributions of turnover and nestedness, turnover made a more significant contribution than nestedness to the taxonomic and phylogenetic β diversity. In contrast, functional nestedness contributed more to the functional β diversity than turnover. Tadarida brasiliensis, Desmodus rotundus, Sturnira hondurensis, and S. parvidens were recorded in all three urbanization conditions. In the most urbanized site, four Myotis species were recorded: M. fortidens, M. keaysi, M. thysanodes, and M. velifer. We suggest that the analysis of different dimensions of diversity is essential and should be considered to strengthen conservation strategies; moreover, we suggest the preservation of native vegetation mosaics and water bodies within the city to maintain bat diversity.

Species Diversity and Elevational Distribution of Bats in Nepal

Species Diversity and Elevational Distribution of Bats in Nepal

Anthropogenic Effects on Bat Activity and Diversity along the Eerste River, South Africa

Anthropogenic Effects on Bat Activity and Diversity along the Eerste River, South Africa

A synopsis of the Early Miocene St Bathans Fauna of New Zealand

The St Bathans Fauna, from sites near the village of St Bathans, Central Otago, South Island, is the first substantive pre-Quaternary terrestrial vertebrate fossil fauna discovered in New Zealand. This fauna derives from 33 sites or discrete sedimentary beds located in the lower 50 m of the lacustrine Bannockburn Formation, Manuherikia Group, and is generally accepted as local stage Altonian (19–15.9 Ma; Burdigalian, Early Miocene) in age. Investigations since 2001 have revealed an abundant and diverse fauna from over 9000 catalogued lots that is herein reviewed. Invertebrates notably include eight genera and species of terrestrial molluscs. Among vertebrates, freshwater fish remains dominate with 17 species evidenced by 16,500 analysed otoliths (genera Neochanna, Galaxias, Prototroctes, and Mataichthys) and many thousands of bones. Birds (minimally 45 species, several thousand bones) are the most common non-fish vertebrates, among which waterfowls dominate all assemblages (10 species). Co-occurring with these was a diverse herpetofauna, including undetermined crocodylians and a terrestrial turtle, both absent in Recent faunas. Significantly, the St Bathans Fauna evidences that Zealandia already had all of New Zealand’s ‘old’ endemic Recent taxa (sphenodontids, leiopelmatids, dinornithiforms, apterygids, aptornithids, strigopoid parrots, acanthisittids, and mystacinids) during the Early Miocene. Furthermore, it includes Australasia’s oldest ardeids, two flightless rallids, a novel higher landbird family, a greater diversity of bats, and terrestrial mammals. All sites reflect a single fauna, except that the ducks Manuherikia lacustrina (stratigraphically lower in section) and M. primadividua (higher) have a mutually exclusive distribution that is not yet correlated with any other biotic distribution differences.

SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity.

Circulating bat coronaviruses represent a pandemic threat. However, our understanding of bat coronavirus pathogenesis and transmission potential is limited by the lack of phenotypically characterized strains. We created molecular clones for the two closest known relatives of SARS-CoV-2, BANAL-52 and BANAL-236. We demonstrated that BANAL-CoVs and SARS-CoV-2 have similar replication kinetics in human bronchial epithelial cells. However, BANAL-CoVs have impaired replication in human nasal epithelial cells and in the upper airway of mice. We also observed reduced pathogenesis in mice and diminished transmission in hamsters. Further, we observed that diverse bat coronaviruses evade interferon and downregulate major histocompatibility complex class I. Collectively, our study demonstrates that despite high genetic similarity across bat coronaviruses, prediction of pandemic potential of a virus necessitates functional characterization. Finally, the restriction of bat coronavirus replication in the upper airway highlights that transmission potential and innate immune restriction can be uncoupled in this high-risk family of emerging viruses.

Endogenous Bornavirus-like Elements in Bats: Evolutionary Insights from the Conserved Riboviral L-Gene in Microbats and Its Antisense Transcription in Myotis daubentonii.

Bats are ecologically diverse vertebrates characterized by their ability to host a wide range of viruses without apparent illness and the presence of numerous endogenous viral elements (EVEs). EVEs are well preserved, expressed, and may affect host biology and immunity, but their role in bat immune system evolution remains unclear. Among EVEs, endogenous bornavirus-like elements (EBLs) are bornavirus sequences integrated into animal genomes. Here, we identified a novel EBL in the microbat Myotis daubentonii, EBLL-Cultervirus.10-MyoDau (short name is CV.10-MyoDau) that shows protein-level conservation with the L-protein of a Cultervirus (Wuhan sharpbelly bornavirus). Surprisingly, we discovered a transcript on the antisense strand comprising three exons, which we named AMCR-MyoDau. The active transcription in Myotis daubentonii tissues of AMCR-MyoDau, confirmed by RNA-Seq analysis and RT-PCR, highlights its potential role during viral infections. Using comparative genomics comprising 63 bat genomes, we demonstrate nucleotide-level conservation of CV.10-MyoDau and AMCR-MyoDau across various bat species and its detection in 22 Yangochiropera and 12 Yinpterochiroptera species. To the best of our knowledge, this marks the first occurrence of a conserved EVE shared among diverse bat species, which is accompanied by a conserved antisense transcript. This highlights the need for future research to explore the role of EVEs in shaping the evolution of bat immunity.

Light-averse behaviour of attic-dwelling bats when commuting through urban areas

Light pollution is spreading around the world, causing a variety of problems, particularly for nocturnal animals such as bats. As urban areas expand, attic-dwelling bats face the problem of being exposed to more and more artificial light as they move to their dark foraging areas. Avoiding street lights could force bats to make energetically costly detours, which could eventually lead to the collapse of urban colonies. We therefore investigated the response of attic-dwelling bats to street lighting, using the brown long-eared bat (Plecotus auritus) as an example. Using radio-tracking, we followed 17 bats during their commutes through two urban areas: a small town and a village in rural Germany. After a conservative filtering process to ensure a high spatial accuracy of the tracking data, we analysed the data of nine bats in detail, using a use-versus-availability approach for the small town and a descriptive approach for the smaller dataset obtained from the village. The best-fitting model confirmed that the bats responded to artificial light at night. Close to the roost (∼10 m), bats preferred areas with low light intensities, but seemed to tolerate some light levels. We speculate that this pattern was caused by bats being forced to leave the roost into an illuminated area. At medium distances from roosts (∼400 m), most bats avoided street lights. In fact, all bats avoided being in close proximity to street lights, even when the lanterns produced only low levels of light. We conclude that brown long-eared bats avoid street lights when moving through urban areas. We recommend the establishment of dark corridors in urban areas to support high bat diversity, including all species along the continuum of light-opportunistic and light-sensitive species.

Moving to mate? Migration strategy does not predict genetic structure or diversity in bats (Chiroptera)

Abstract How, when, and where animals move during mating periods directs gene-flow patterns across landscapes. Traits associated with movement, such as movement ability and migratory behaviour, are sometimes correlated with population genetic structure, but this relationship depends on where and when mating occurs relative to annual movements. With their wide diversity in behaviours and life-history strategies, bats provide a testing ground for hypotheses about population structure related to migration and mating. We used a global sample of microsatellite data (N = 233 sampling locations from 17 bat species) associated with published studies to examine links between genetic variation and short-distance, long-distance, or non-migratory strategies that also relate to varied mating strategies. The genetic measures we tested were population-specific differentiation, gene diversity, and allelic richness. Using Bayesian models that accounted for phylogenetic distances among species and spatial autocorrelation, we identified no correlations between migration strategy and genetic variation. Our results suggest that hypotheses about genetic structure being mediated by migration might not hold, in general, for bat species. We discuss the need for continued research into the complex association of ecological, biogeographical, and behavioural factors that facilitate gene flow among populations, especially in species with diverse movement patterns.

Island area and diet predict diversity and distribution of bats in a Pacific Northwest archipelago

Abstract The island biogeography theory predicts that species richness in islands and island-like systems is the ultimate result of island isolation and area. Species with high dispersal capabilities are predicted to be less affected by these factors because of their capacity to move more efficiently between islands or habitats, and here we test this idea in bats, the only mammals capable of flight. We conducted mist net and acoustic surveys across 21 islands in the San Juan Archipelago (Washington State, United States) and adjacent northwest mainland to: (i) investigate the effects of island area, distance from mainland, and habitat on bat diversity; and (ii) evaluate whether differences in morphological (body mass, forearm length, wing loading) and ecological (dietary niche breadth, foraging guild) traits among species influence their prevalence across islands. We found that island size strongly influenced patterns of species richness, with larger islands having a greater number of bat species. However, neither island distance from mainland nor any measure of habitat availability was a significant predictor of species richness at the scale of this study. Additionally, we found that dietary niche breadth, as opposed to any morphological trait, best predicted the prevalence of species across the islands. Our results suggest that species with more specialized diets may be more vulnerable to habitat fragmentation, and provide insight into how geographic and ecological factors affect the diversity of insular bat communities, adding to growing knowledge about the role of species traits as mediators of their responses to large-scale landscape structure.