The freshwater ecological characteristics in terms of the daily inventory of thermal stratification, spatial variation of O2 distribution, and the mobility of potentially toxic elements (PTEs) at the water sediment interface (WSI) are prudent freshwater assessment indices for water quality management protocol. The study conducted daily observations within a monsoon-influenced region, utilizing high-resolution techniques such as HR Peeper, Yellow Spring Instrument (YSI), and ZrO-Chelex diffusive gradient technology (DGT) to analyze PTEs, specifically phosphorus (P) and iron (Fe),within the water-sediment interface (WSI) under different temperatures and oxygen conditions. The 66-day field study showed that high thermal structure contributed significantly to production Fe ions and P from sediment under reductive dissolution of FeOOH. The study also revealed that P and Fe exhibited comparable spatial distribution patterns at the WSI, indicating a linked relationship between these PTEs. This correlation was reinforced by high Pearson correlation coefficients ranging from 0.7 to 0.9 (bilateral, p < 0.05) indicating that the concentrations of labile P were predominantly influenced by the release of phosphorus bound to iron. The fluxes of the PTEs were positive with a range of Fe, 3.3-81.5 mg/m2 day and P, 0.03-0.5 mg/m2 day showing the sediments liberated the PTEs into the benthic water. Again, high positive fluxes (Fe≈60 mg/m2 day, P≈0.5 mg/m2 day) for PTEs were obtained when stratification was high (anoxic conditions) and low (Fe≈5 mg/m2 day, P≈0.08 mg/m2 day) when stratification did not exist. This depicts that Fe/P dynamics were hinged mainly on hypoxic conditions in the benthic water under the reductive dissolution of FeOOH. The findings showed that organic materials (both solid and dissolved) correlated (> 0.7) significantly with (positive high values) Fe. This indicates that their interaction contributed to the reservoir water deterioration. However, Ca2⁺ and Mg2⁺ had little impact on the liberation of Fe-DOC-P from sediments due to their inability to compete with Fe for binding to DOC and P, as shown by their low correlation values. The research provides in-depth insights into the dynamics of PTEs on a daily timescale and offers valuable information for water management practices in inland reservoirs, particularly concerning the cycling of phosphorus (P) and its effects on ecosystem health.