Starch structure determination is crucial for understanding its properties and applications. However, method-dependent variations in size determination can lead to ambiguous interpretations. This study investigates the ambiguities in starch structure determination by evaluating the variation in size of four commercial branched starches as determined by average molar mass, gyration radius, hydrodynamic radius, and chain-length distribution. The starches were analyzed using high-performance size-exclusion chromatography (HPSEC) coupled with multi-angle laser light scattering (MALLS) and refractive index detector (RI), and after debranching by HPSEC-RI and high-performance anion-exchange chromatography (HPAEC) with pulsed amperometric detector (PAD). MALLS-derived MW values for amylose and amylopectin were higher than those obtained using the hydrodynamic volume method. The molecular weight of amylopectin chains, determined by the degree of polymerization (DP), ranged between 2.1 and 2.9 × 103 g/mol for short chains, and between 4.1 × 103 and 1.1 × 104 g/mol for long chains. Differences in amylopectin chain content were observed between HPSEC-RI and HPAEC-PAD, highlighting the complementary nature of these techniques. The study underscores the need for standardizing chromatography-based methodologies in starch research, particularly with the advent of new technologies.