Dissociative Electron Attachment Process Research Articles

Direct Observation of Anionic Yields from the Liquid-Vapor Interface by Electron Irradiation.

Dissociative electron attachment (DEA) is widely believed to play a high-profile role in ionizing radiation damages of bioorganic molecules, and its fundamentals are mainly learned from the gas-phase studies. However, the DEA process in aqueous solution is still in debate. Here we provide experimental evidence about the DEA processes of liquid methanol by using electron-impact-time-delayed mass spectrometry. In contrast to the gas- and solid-phase DEAs, methoxide ion CH3O- is the predominant product from the liquid interface. Furthermore, this anion can be produced with both the primary low-energy electrons and the inelastically scattered and secondary low-energy electrons. On the contrary, the primary low-energy electrons in the liquid bulk are more likely to be solvated, rather than directly participating in the DEA process. Our study provides new insights into radiation chemistry, particularly of bioorganic relevance.

Observation of Renner-Teller and predissociation coupled vibronic intensity borrowing in dissociative electron attachment to OCS.

We use a time-of-flight-based velocity map imaging method to look into the dissociative electron attachment to a linear OCS molecule at electron beam energies ranging from 4.5 to 8.5eV. The conical time-gated wedge slice imaging method is utilized to extract fragments' slice images, kinetic energy (KE), and angular distributions, which provide a complete kinematic understanding of this experiment on the dissociative electron attachment process. We observe that the formation of S- is relatively higher than the O- product. Three distinct dissociative KE bands of S-/OCS have been observed for the 5.0 and 6.5eV resonance positions. We notice a prominent rovibrationally coupled bimodality for each KE band in the variation of the most probable KE values. When the electron energy is changed from 5.5 to 6.0eV, we observed vibronic intensity borrowing in the highest momentum band of S- via the Σ → Π symmetric dipole-forbidden transitions within the 1.5eV energy gap. Multiple peaks in the angular distributions of S- and their modeling indicate the presence of Renner-Teller vibronic splitting. Using Q-Chem's implemented complex absorbing potential-equation of motion-electron affinity coupled cluster singles and doubles aug-cc-pVDZ+4s3p level of multireference-based electronic structure theory, we confirm the presence of OCS temporary negative ion bending vibrations and Renner-Teller vibronic splittings for the Π symmetric states. Additionally, we notice the presence of a non-radiative predissociation continuum (bringing down the rotational spectrum) and speed-dependent angular anisotropy in the S- fragmentation. Our findings at the resonance of OCS at 6.5eV closely align with the prediction of vibronic intensity borrowing by Orlandi and Siebrand [J. Chem. Phys. 58, 4513 (1973)].

<i>Ab initio</i> molecular dynamics study on dissociation process of 2-thiouracil and its tautomers under low-energy electron interactions

When biomolecules interact with high-energy particles and rays, they are directly ionized or dissociated, then a large number of low-energy electrons are formed as secondary particles. These low-energy electrons will attach to biomolecules, and trigger off the secondary dissociation, forming free radicals and ions with high reactivity, which can damage the structure and function of the biomolecule and cause irreversible radiation damage to the biomolecule. It is important to study the low-energy dissociative electron attachment (DEA) process of biomolecules for understanding radiation damage to biological organisms. Currently, the theoretical studies of DEA have mainly focused on the bound states of negative ions and the types of resonances in the dissociation process. The dissociation process is well described by quantum computational method, but the diversity and complexity of dissociation channels present in the dissociation process of 2-thiouracil molecule also pose a great computational challenge to these methods. In addition, the quantum computational methods are not ideal for dealing with the discrete states of chemical bonds and the problem of continuity coupling of electrons. The dissociation dynamics of biomolecules mainly results from ionization and electron attachment. <i>Ab initio</i> molecular dynamics simulation can reasonably describe these processes. In light of these considerations, <i>ab initio</i> molecular dynamics simulation is used in this work to study dynamic variation process in DEA. The low-energy electron dissociative attachment to 2-thiouracil in the gas phase is studied by using the Born-Oppenheimer molecular dynamics model combined with density functional theory. It is found that an important dehydrogenation phenomenon of 2-thiouracil and its tautomers occurs in the DEA process, and that the N—H and C—H bond are broken at specific locations. Due to the loss of hydrogen atoms at the N and C sites, the closed-shell dehydrogenated negative ion (TU-H)<sup>–</sup> forms, which is the most important negative ion fragments in the dissociation process. The potential energy curves, the bond dissociation energy and the electron affinity energy of the broken bond show that the N—H bond is the most likely to break, indicating the formation of the negative ion (TU-H)<sup>–</sup> mainly comes from the breaking of N—H bond. The theoretical calculations in this work are in good agreement with the available experimental results, indicating that the chosen calculation method is fully reliable. ​The BOMD simulations can not only dynamically recover the process of dissociative attachment of low-energy electrons to 2-thiouracil, but also more importantly provide an insight into the mechanisms of dehydrogenation and dissociation channels of 2-thiouracil molecules in DEA process.

Conceptual density functional theory for temporary anions stabilized by scaled nuclear charges.

The charge stabilization method has often been used before for obtaining energies of temporary anions. Herein, we combine this method for the first time with conceptual density functional theory (DFT) and quantum theory of atoms in molecules by extending it to the study of nuclear Fukui functions, atom-condensed electronic Fukui functions, and bond critical points. This is applied to temporary anions of ethene and chlorinated ethene compounds, which are known to undergo dissociative electron attachment (DEA). It appears that the method is able to detect multiple valence resonance states in the same molecule, namely, a Π and a Σ state. The obtained nuclear and atom-condensed electronic Fukui functions are interpreted as nuclear forces and electron distributions, respectively, and show clear differences between the Π and Σ states. This enables a more profound characterization and understanding of how the DEA process proceeds. The conclusions are in line with findings from earlier publications, proving that the combination of conceptual DFT with the charge stabilization method yields reasonable results at rather low computational cost.

Electron Impact with the Liquid-Vapor Interface.

Reaction dynamics in the liquid-vapor interface is one of the crucial physical sciences but is still starving for in-depth exploration. It is challenging to selectively detect the interfacial species or the yields of chemical reaction therein, meanwhile shielding or reducing the interference from the vapor and liquid bulk. Mass spectrometry is a straightforward method but is also frustrated in such a selective detection. Using a liquid microjet in combination with a pulsed electron beam, a linear time-of-flight mass spectrometer, and a quadrupole mass filter, we recently innovated time-delayed mass spectrometry for investigations of the liquid-vapor interface. In this Account, we illustrate how this unique method succeeds in disentangling different sources, i.e., the vapor and liquid-vapor interface, of the ionic yields of the electron impacts with a liquid beam of alcohol in vacuum. These achievements are basically attributed to the application of an onion-peeling strategy in the ion detection. Concretely, the microsecond time scale of molecular volatilization can be resolved well by tuning the delay time between the nanosecond pulses of incident electron bunch and ion attractor. First, the specific orientation of the interfacial molecule, i.e., a well-known fact about the hydrophobic hydrocarbon groups pointing outside the liquid surface of alcohol, is validated again. More importantly, the dynamic features of time-delayed mass spectra, in particular, for the ionic yields from the liquid-vapor interface, are rationalized explicitly. Moreover, we demonstrate evidence of in situ molecular dimers in the liquid-vapor interface of 1-propanol. As the first example of electron-induced reaction in the liquid-vapor interface, dimethyl ether can be synthesized in the liquid methanol interface due to local interfacial acidification by high-energy electron impacts. On the contrary, the low energy electron can lead to local basicity through dissociative electron attachment (DEA). Besides the primary low-energy electrons, the low-energy secondary and inelastically scattered electrons in the higher-energy impacts of the primary electrons can also participate in the DEA process. In contrast to the gas- or solid-phase DEAs, that in the liquid-vapor interface shows distinct differences in both the types and efficiencies of anionic products. With these and efforts in the future, we develop a molecular-level understanding of how the chemical reactions happen in the liquid-vapor interface.

Electron and Positron Scattering Cross Sections from CO2: A Comparative Study over a Broad Energy Range (0.1–5000 eV)

In this Review, we present a comparative study between electron and positron scattering cross sections from CO2 molecules over a broad impact energy range (0.1–5000 eV). For electron scattering, new total electron scattering cross sections (e-TCS) have been measured with a high resolution magnetically confined electron beam transmission system from 1 to 200 eV. Dissociative electron attachment processes for electron energies from 3 to 52 eV have been analyzed by measuring the relative O– anion production yield. In addition, elastic, inelastic, and total scattering cross section calculations have been carried out in the framework of the Independent Atom Model by using the Screening Corrected Additive Rule, including interference effects (IAM-SCARI). Based on the previous cross section compilation from Itikawa (J. Phys. Chem. Ref. Data, 2002, 31, 749−767) and the present measurements and calculations, an updated recommended e-TCS data set has been used as reference values to obtain a self-consistent integral cross section data set for the elastic and inelastic (vibrational excitation, electronic excitation, and ionization) scattering channels. A similar calculation has been carried out for positrons, which shows important differences between the electron scattering behavior: e.g., more relevance of the target polarization at the lower energies, more efficient excitation of the target at intermediate energies, but a lower total scattering cross section for increasing energies, even at 5000 eV. This result does not agree with the charge independence of the scattering cross section predicted by the first Born approximation (FBA). However, we have shown that the inelastic channels follow the FBA’s predictions for energies above 500 eV while the elastic part, due to the different signs of the scattering potential constituent terms, remains lower for positrons even at the maximum impact energy considered here (5000 eV). As in the case of electrons, a self-consistent set of integral positron scattering cross sections, including elastic and inelastic (vibrational excitation, electronic excitation, positronium formation, and ionization) channels is provided. Again, to derive these data, positron scattering total cross sections based on a previous compilation from Brunger et al. (J. Phys. Chem. Ref. Data, 2017, 46, 023102) and the present calculation have been used as reference values. Data for the main inelastic channels, i.e. direct ionization and positronium formation, derived with this procedure, show excellent agreement with the experimental results available in the literature. Inconsistencies found between different model potential calculations, both for the elastic and inelastic collision processes, suggest that new calculations using more sophisticated methods are required.

HF Formation through Dissociative Electron Attachment-A Combined Experimental and Theoretical Study on Pentafluorothiophenol and 2-Fluorothiophenol.

In chemoradiation therapy, dissociative electron attachment (DEA) may play an important role with respect to the efficiency of the radiosensitizers used. The rational tailoring of such radiosensitizers to be more susceptive to DEA may thus offer a path to increase their efficiency. Potentially, this may be achieved by tailoring rearrangement reactions into the DEA process such that these may proceed at low incident electron energies, where DEA is most effective. Favorably altering the orbital structure of the respective molecules through substitution is another path that may be taken to promote dissociation up on electron capture. Here we present a combined experimental and theoretical study on DEA in relation to pentafluorothiophenol (PFTP) and 2-fluorothiophenol (2-FTP). We investigate the thermochemistry and dynamics of neutral HF formation through DEA as means to lower the threshold for dissociation up on electron capture to these compounds, and we explore the influence of perfluorination on their orbital structure. Fragment ion yield curves are presented, and the thermochemical thresholds for the respective DEA processes are computed as well as the minimum energy paths for HF formation up on electron capture and the underlying orbital structure of the respective molecular anions. We show that perfluorination of the aromatic ring in these compounds plays an important role in enabling HF formation by further lowering the threshold for this process and through favorable influence on the orbital structure, such that DEA is promoted. We argue that this approach may offer a path for tailoring new and efficient radiosensitizers.

Low-energy electron interaction and focused electron beam-induced deposition of molybdenum hexacarbonyl (Mo(CO)6).

Motivated by the potential role of molybdenum in semiconductor materials, we present a combined theoretical and experimental gas-phase study on dissociative electron attachment (DEA) and dissociative ionization (DI) of Mo(CO)6 in comparison to focused electron beam-induced deposition (FEBID) of this precursor. The DEA and DI experiments are compared to previous work, differences are addressed, and the nature of the underlying resonances leading to the observed DEA processes are discussed in relation to an earlier electron transmission study. Relative contributions of individual ionic species obtained through DEA and DI of Mo(CO)6 and the average CO loss per incident are calculated and compared to the composition of the FEBID deposits produced. These are also compared to gas phase, surface science and deposition studies on W(CO)6 and we hypothesize that reductive ligand loss through electron attachment may promote metal–metal bond formation in the deposition process, leading to further ligand loss and the high metal content observed in FEBID for both these compounds.

Structural, spectroscopic and electron collisional studies of isoxazole (C3H3NO)

• Comprehensive structural, spectroscopic and electron collision data of Isoxazole. • DFT calculations of ground state geometry and vibrational frequencies. • Comparison with earlier data; confirmation/revision of vibronic assignments. • Vertical excitation energies for singlet and triplet states using TDDFT. • Low energy electron scattering data for Isoxazole from 0.1-20 eV. The structural, spectroscopic, and electron collision data of Isoxazole (C 3 H 3 NO) were subjected to extensive computational studies. Spectroscopic calculations were performed on ground and excited states using the density functional theory (DFT) and the time dependent density functional theory (TDDFT) respectively. Ground state geometry and vibrational frequencies agree well with earlier works and lead to re-assignment of a few vibrational bands. Theoretically predicted singlet and triplet excitation energies are in good agreement with earlier experimental data, while predicted oscillator strengths of singlet states correlate well with the observed relative spectral intensities. The electron collision data for isoxazole molecule were calculated using Quantemol-N, which employs the UK Molecular R-matrix codes. These calculations were performed for the total elastic cross-sections along with their symmetrical components, differential and momentum transfer cross-sections, inelastic scattering cross-sections comprising of discrete electronic excitation, ionization and dissociative electron attachment processes. We employed the two most popular theoretical approaches to calculate the electron impact ionization cross-sections viz. Complex scattering potential-ionization contribution (CSP-ic) and the Binary encounter Bethe (BEB) model. The rate coefficients for elastic and inelastic processes were estimated over a wide electron temperature range. In addition to scattering calculations, the other motivation was to obtain resonances which are signatures of many significant low energy phenomena. The first two peak correspond to π* shape resonances which are observed at 2.1 eV and 4.69 eV and are in accordance with the earlier reported data. The third peak is observed at 10.96 eV which may be attributed to the σ* shape resonance.

Molecular synthesis in ices triggered by dissociative electron attachment to carbon monoxide

Chemical reactions in mixed molecular ices as relevant in the context of astrochemistry can be initiated by electron-molecule interactions. Dissociative electron attachment (DEA) as initiating step is identified from the enhancement of product yields upon irradiation at particular electron energies. Herein, we show that DEA to CO leads to the formation of HCN in mixed CO/hbox {NH}_{{3}} ice at electron energies around 11 eV and 16 eV. We propose that this reaction proceeds via insertion of the neutral C fragment into a N–H bond. In the case of CO/hbox {H}_{{2}}O and CO/hbox {CH}_{{3}}OH ices, a resonant enhancement of the yields of HCOOH and hbox {CH}_{{3}}OCHO, respectively, is observed around 10 eV. In both ices, both molecular constituents exhibit DEA processes in this energy range so that the energy-dependent product yield alone does not uniquely identify the relevant DEA channel. However, we demonstrate by comparing with earlier results on mixed ices where CO is replaced by hbox {C}_{{2}}hbox {H}_{{4}} that DEA to CO is again responsible for the enhanced product formation. In this case, hbox {O}^{cdot -} activates hbox {H}_{{2}}O or hbox {CH}_{{3}}OH which leads to the formation of larger products. We thus show that DEA to CO plays an important role in electron-induced syntheses in molecular ices.Graphical abstract

A Missing Puzzle in Dissociative Electron Attachment to Biomolecules: The Detection of Radicals

Ionizing radiation releases a flood of low-energy electrons that often causes the fragmentation of the molecular species it encounters. Special attention has been paid to the electrons’ contribution to DNA damage via the dissociative electron attachment (DEA) process. Although numerous research groups worldwide have probed these processes in the past, and many significant achievements have been made, some technical challenges have hindered researchers from obtaining a complete picture of DEA. Therefore, this research perspective calls urgently for the implementation of advanced techniques to identify non-charged radicals that form from such a decomposition of gas-phase molecules. Having well-described DEA products offers a promise to benefit society by straddling the boundary between physics, chemistry, and biology, and it brings the tools of atomic and molecular physics to bear on relevant issues of radiation research and medicine.

Vibrational excitation and dissociation of deuterium molecule by electron impact

A theoretical investigation of electron-D2 resonant collisions—via the low-lying and the Rydberg states of D—is presented for vibrational excitation, dissociative electron attachment and dissociative excitation processes by using the local-complex-potential approach. Full sets of vibrationally resolved cross sections, involving the ground electronic state——and the first two electronic excited states— and —of the D2 molecule, are given for fusion plasma applications in their technologically relevant partially dissociated, detached divertor regimes. In particular, transitions between electronic excited states are also considered. Comparisons are made with cross sections present in the literature, where available.

Negative ion formation and fragmentation upon dissociative electron attachment to the nicotinamide molecule.

Nicotinamide (C6H6N2O) is a biologically relevant molecule. This compound has several important roles related to the anabolic and metabolic processes that take place in living organisms. It is also used as a radiosensitizer in tumor therapy. As a result of the interaction of high-energy radiation with matter, low-energy electrons are also released, which can also interact with other molecules, forming several types of ions. In the present investigation, dissociative electron attachment to C6H6N2O has been studied in a crossed electron-molecular beams experiment in the electron energy range of about 0–15 eV. In the experiment, six anionic species were detected: C6H5N2O−, C5H4N−, NCO−, O−/NH2−, and CN−, with NCO− being the most prominent anion. We also provide detailed computational results regarding the energetic thresholds and pathways of the respective dissociative electron attachment (DEA) channels. The experimental results are compared with the theoretical ones and on this basis, the possible DEA reactions for the formation of anions at a given resonance energy were assigned as well as the generation of neutrals fragments such as pyridine and its several derivatives and radicals are predicted. The pyridine ring seems to stay intact during the DEA process.

Dissociative electron attachment to amide bond containing molecules: N-ethylformamide and N-ethylacetamide.

To advance our quest to understand the role of low energy electrons in biomolecular systems, we performed investigations on dissociative electron attachment (DEA) to gas-phase N-ethylformamide (NEF) and N-ethylacetamide (NEA) molecules. Both molecules contain the amide bond, which is the linkage between two consecutive amino acid residues in proteins. Thus, their electron-induced dissociation can imitate the resonant behavior of the DEA process in more complex biostructures. Our experimental results indicate that in these two molecules, the dissociation of the amide bond results in a double resonant structure with peaks at ∼5 eV and 9 eV. We also determined the energy position of resonant states for several negative ions, i.e., the other dissociation products from NEF and NEA. Our predictions of dissociation channels were supported by density functional theory calculations of the corresponding threshold energies. Our results and those previously reported for small amides and peptides imply the fundamental nature for breakage of the amide bond through the DEA process.

Theoretical insights into the dissociation process for dissociative electron attachment to adenine and its tautomer

AbstractThe ab initio molecular dynamics (MD) simulations using an atom-centered density matrix propagation method are carried out in the first time to investigate the dissociative electron attachment (DEA) processes of adenine and its tautomer in the gas phase. Since the incoming electron are captured on the lowest π∗ anti-bond orbital, which is led to the different N–H bond, the C–H bond and the C–N bond are broken. The dominant anion observed in DEA dissociation process is the closed-shell dehydrogenated anion (Ade − H)−. The additional anions (Ade − NH2)− and (Ade − 2H)− are also obtained in ADMP simulation. The results are well consistent with the previous DEA experimental results. Thus, the ADMP method is used to gain a more intuitive and better understanding of the necessary dissociation process in the DEA experiment.

Absolute dissociative electron attachment cross-section measurement of difluoromethane

Dissociative electron attachment (DEA) and ion-pair dissociation (IPD) processes of Difluoromethane (CH$_2$F$_2$) have been studied in the incident electron energy range 0 to 45 eV. Three different fragment anions (F$^-$, CHF$^-$ and F$_2^-$) are detected in the DEA range and two anions (F$^-$ and CHF$^-$) are detected in IPD range. Absolute cross-section of the F$^-$ fragment ion is measured for the first time. Three different resonances for both F$^-$ and CHF$^-$ ions and one single resonance peak for the F$_2^-$ ions are observed. Constant increase in ion counts above 8 eV incident electron energy indicates the involvement of IPD process. From the experimental observation, it is speculated that near 11 eV incident electron energy both DEA and IPD processes occur simultaneously.

Probing the Potential Energy Surfaces of BrCN- by Dissociative Electron Attachment.

State coupling certainly determines the topologic features of the molecular potential energy surface (PES) and potentially diversifies chemical reaction pathways. Here we report the new PESs of BrCN- in the low-lying electronic states that are distinctly different from the previous predictions in the short Br-CN bond region but validated by the high-resolution ion velocity imaging measurements of low-energy dissociative electron attachment (DEA) to BrCN. Besides the vibrating CN- ions produced in the fast Br-CN bond stretching motions, we confirm that the ro-vibrating CN- ions with a nearly isotropic angular distribution are produced by receiving a torque in the combinational motion of Br-CN bond bending and stretching. The latter process is closely related to the potential well of BrCN- at the first excited state A2Π3/2 that arises from the Π-Σ state couplings. Our findings not only suggest that the PESs of other anionic cyanogen halides are in dire need of reexamination but also show that ion velocity imaging of the DEA process is a powerful experimental method for evaluating the theoretical PESs of molecular anions.

Nonlocal complex potential theory of dissociative electron attachment: Inclusion of two vibrational modes

The process of dissociative electron attachment (DEA) to molecules with several vibrational degrees of freedom is usually treated in the approximation of the local potential for the description of the nuclear motion. We develop the nonlocal complex potential theory to treat the dissociation dynamics when there is more than one vibrational mode in the neutral molecule. We demonstrate the application of the multimode nonlocal theory to a generic molecule of the type $\mathrm{C}{Y}_{3}X$, where Y denotes the H or F atom and X denotes the halogen atom, with the inclusion of symmetric C--X stretch and $\mathrm{C}{Y}_{3}$ deform (``umbrella'') vibrational modes. We present results for the dependence of DEA cross sections on the electron energy and vibrational energy for the ${\mathrm{CF}}_{3}\mathrm{Cl}$ molecule in the two-mode approximation. The 1.5 eV peak in the DEA cross section is well described in the one-mode approximation. However, inclusion of additional modes is required to explain the experimentally observed low-energy peak in the DEA cross section at the vibrational temperature ${T}_{v}=800$ K.

Uracil-5-yl O-Sulfamate: An Illusive Radiosensitizer. Pitfalls in Modeling the Radiosensitizing Derivatives of Nucleobases.

Efficient radiotherapy requires the concomitant use of ionizing radiation (IR) and a radiosensitizer. In the present work uracil-5-yl O-sulfamate (SU) is tested against its radiosensitizing potential. The compound possesses appropriate dissociative electron attachment (DEA) characteristics calculated at the M06-2X/6-31++G(d,p) level. Crossed electron–molecular beam experiments in the gas phase demonstrate that SU undergoes efficient DEA processes, and the single C–O or S–O bond dissociations account for the majority of fragments induced by electron attachment. Most DEAs proceed already for electrons with kinetic energies of ∼0 eV, which is supported by the exothermic thresholds calculated at the M06-2X/aug-cc-pVTZ level. However, in water solution under reductive conditions and physiological pH, SU does not undergo radiolysis, which demonstrates the crucial influence of aqueous environment on the radiosensitizing properties of modified nucleosides.

Velocity imaging of H− from formic acid: probing functional group dependence in dissociative electron attachment

Dissociative electron attachment (DEA) to formic acid is investigated using velocity slice imaging of H− ions. From the momentum distributions, we infer that the broad peak observed in absolute cross section of H− between 6 and 12 eV has contribution from three resonances. The resonance below 7 eV shows angular distribution fairly close to that seen from the B1 resonance in water and the first peak of the two peaks from the hydroxyl site of acetic acid. The resonance observed around 9 eV appears to have definite contribution from the C-site of the molecule, as identified from the momentum distribution and similarity with other organic molecules including methane. The analysis of the kinetic energy distribution shows that the two resonances below 8 eV are dominated by the contribution from hydroxyl site of the molecule. The results indicate that formic acid tends to behave like other small carboxylic acids and alcohols and displays functional group dependence and corresponding site specificity in the DEA process, to a large extent.