Dissociative Adsorption Modes Research Articles

Water Splitting on Multifaceted SrTiO3 Nanocrystals: Computational Study

Recent experimental findings suggest that strontium titanate SrTiO3 (STO) photocatalytic activity for water splitting could be improved by creating multifaceted nanoparticles. To understand the underlying mechanisms and energetics, the model for faceted nanoparticles was created. The multifaceted nanoparticles’ surface is considered by us as a combination of flat and “stepped” facets. Ab initio calculations of the adsorption of water and oxygen evolution reaction (OER) intermediates were performed. Our findings suggest that the “slope” part of the step showed a natural similarity to the flat surface, whereas the “ridge” part exhibited significantly different adsorption configurations. On the “slope” region, both molecular and dissociative adsorption modes were possible, whereas on the “ridge”, only dissociative adsorption was observed. Water adsorption energies on the “ridge” ( −1.50 eV) were significantly higher than on the “slope” ( −0.76 eV molecular; −0.83 eV dissociative) or flat surface ( −0.79 eV molecular; −1.09 eV dissociative).

Theoretical study of glycine amino acid adsorption on graphene oxide.

The non-dissociative and dissociative adsorptions of zwitterionic Gly on graphene oxide (GO) was studied in the framework of DFT using a cluster model approach. In this work, the interaction with an epoxy group of GO basal plane was mainly considered. As a comparison, the non-dissociative and dissociative adsorptions of neutral Gly were also taken into account. The non-dissociative adsorption modes for zwitterionic and neutral Gly conformers show binding energies of 12.2 and 14.4kcalmol-1, respectively. These molecules are thought to remain over the GO surface due to attractive noncovalent interactions. Two dissociative adsorption modes, for Z-Gly and N-Gly, show smaller binding energies of 7.2 and 8.4kcalmol-1, where the deprotonated species links strongly through a C-O or C-N covalent bond to the GO surface. The results obtained in the present theoretical approach to the glycine/graphene oxide system support the fact that glycine can be attached to epoxy groups of graphene oxide basal planes in addition to the anchoring on edge oxidation groups. In summary, we conclude that glycine can be used as a reducing agent as well as a functionalizer of GO sheets.

Dissociative adsorption modes of TATB on the Al (111) surface: a DFT investigation.

Herein, the adsorption modes and electronic structures of TATB/Al (111) systems were investigated using the density functional theory (DFT) approach. We found that chemical adsorption led to the decomposition of the TATB molecule on the Al surface by four adsorption modes. All the adsorption configurations were accompanied by fractures of the N–O bonds in the nitro groups. In addition, there was a hydrogen atom transfer for 5P. For parallel and vertical adsorptions, the TATB molecules favored planar or quasi-planar structures. The order of total energy with BSSE correction matches well with the order of adsorption energy. The absolute values of energy and adsorption energy of 6P and 6V are highest in the parallel and vertical adsorption systems, respectively. Electrons are transferred from the Al (111) surface to the TATB molecule; this results in the activation of TATB on the Al (111) surface and obvious augmentation of the PDOS (partial density of states) peaks of the N and O atoms. From the Al (111) surface to the TATB molecule, the transfer of the electrons of 4P (14.00e) and 6V (9.04e) is largest for the parallel and vertical adsorptions, respectively.

DFT Study of Azole Corrosion Inhibitors on Cu2O Model of Oxidized Copper Surfaces: II. Lateral Interactions and Thermodynamic Stability

The adsorption of imidazole, triazole, and tetrazole—used as simple models of azole corrosion inhibitors—on various Cu 2 O(111)- and Cu 2 O(110)-type surfaces was characterized using density functional theory (DFT) calculations with the focus on lateral intermolecular interactions and the thermodynamic stability of various adsorption structures. To this end, an ab initio thermodynamics approach was used to construct two-dimensional phase diagrams for all three molecules. The impact of van der Waals dispersion interactions on molecular adsorption bonding was also addressed. Lateral intermolecular interactions were found to be the most repulsive for imidazole and the least for tetrazole, for which they are usually even slightly attractive. Both non-dissociative and dissociative adsorption modes were considered and although dissociated molecules bind to surfaces more strongly, none of the considered structures that involve dissociated molecules appear on the phase diagrams. Our results show that the three azole molecules display a strong tendency to preferentially adsorb at reactive coordinatively unsaturated (CUS) Cu surface sites and stabilize them. According to the calculated phase diagrams for Cu 2 O(111)-type surfaces, the three azole molecules adsorb to specific CUS sites, designated as Cu CUS , under all conditions at which molecular adsorption is stable. This tentatively suggests that their corrosion inhibition capability may stem, at least in part, from their ability to passivate reactive surface sites. We further comment on a specific drawback due to neglect of configurational entropy that is usually utilized within the ab initio thermodynamics approach. We analyze the issue for Langmuir and Frumkin adsorption models and show that when configurational entropy is neglected, the ab initio thermodynamics approach is too hasty to predict phase-transition like behavior.

DFT Study of Azole Corrosion Inhibitors on Cu2O Model of Oxidized Copper Surfaces: I. Molecule–Surface and Cl–Surface Bonding

The adsorption of three simple azole molecules—imidazole, triazole, and tetrazole—and Cl on various sites of several Cu 2 O(111)- and Cu 2 O(110)-type surfaces, including Cu and O vacancies, was characterized using density functional theory (DFT) calculations; the three molecules can be seen as models of azole corrosion inhibitors and Cl as a corrosion activator. Both non-dissociative and dissociative adsorption modes were considered for azole molecules; the latter involves the N–H bond cleavage, hence we also addressed the adsorption of H, which is a co-product of the dissociative adsorption. We find that molecules and Cl bind much stronger to unsaturated Cu sites compared to saturated ones. Dissociated molecules bind considerably stronger to the surface compared to the intact molecules, although even the latter can bind rather strongly to specific unsaturated Cu sites. Bader analysis reveals that binding energies of dissociated molecules at various Cu sites correlate with Bader charges of Cu ions before molecular adsorption, i.e., the smaller the Cu charge, the stronger the molecular bonding. All three azole molecules display similar non-dissociative adsorption energies, but significant difference between them appears for dissociative adsorption mode, i.e., dissociated triazole and tetrazole bind much stronger than dissociated imidazole because the former two can form two strong N–Cu bonds, but imidazole cannot due to its incompatible molecular geometry. Dissociative adsorption is consequently favorable only for triazole and tetrazole, but only at oxygen vacancy sites, where it proceeds barrierlessly (or almost so). This observation may suggest that, for imidazole, only the neutral form, but, for triazole and tetrazole, also their deprotonated forms are the active species for inhibiting corrosion under near neutral pH conditions, where copper surfaces are expected to be oxidized. As for the comparison with the Cl–surface bonding, the calculations indicate that only dissociated triazole and tetrazole bind strong enough to rival the Cl–surface bonds.

Comprehensive study of methylation on the silicon (100)-2 × 1 surface: a density functional approach.

A detailed mechanistic investigation of Si-Me formation over the silicon (100)-2 × 1 surface using the Si9H12 cluster model has been performed using various reagents, based on two basic mechanisms: dissociation and substitution. The reagents CH4, CH3Cl for dissociation and CH3Li, CH3MgBr for substitution mechanism are used to explore the methylation process on the silicon surface at the M062X/6-311+G(2d, p) level of theory. The associated potential energy surfaces explored here are aimed to unveil the most favored pathway of methylation with appropriate reagents. Dissociation of methane forms a monomethylated product (D1) through an energetically unfavorable pathway. All the adsorption modes of CH3Cl over the silicon surface are also detected and analyzed. Methyl chloride dissociates to form another monomethylated product D2 and its derivative D3 in the entrance channel, while, in the next step, bridged compounds I1 (Cl-bridged) and I2 (H-bridged) are produced from them, respectively. The C-Cl dissociation leads to the formation of D2 having a lower activation barrier. With a comparably high activation barrier in the C-H dissociation, producing D3, very interestingly carbene intermediate has been detected in the reaction pathway. Detection of energetically unfavored conversions from D2 to I1 and D3 to I2 ensured that the methylation process will not be hampered through these interconversions. For substitution, HCl- and Cl2-passivated Si surfaces are taken, where chlorine is to be substituted by the methyl group of both of the methylating agents. With both substituents, HCl-passivated Si9H12 gives D1. The substitution process on Cl2-passivated Si9H12 leads to the formation of D2 in the first step and dimethylated product (S1) in the final step. In all the above substitution processes, methyl lithium proved to be the better substituent for the formations of D1, D2, and S1 on HCl- or Cl2-passivated surfaces. The present work not only demonstrated methyl lithium as one of the best methylating agents but also revealed the interrelation among the dissociative adsorption modes of CH3Cl, reported earlier, in a single potential energy surface with a remarkable detection of carbene intermediate formed in the pathway of C-H dissociation.

Acetylacetone, an Interesting Anchoring Group for ZnO-Based Organic−Inorganic Hybrid Materials: A Combined Experimental and Theoretical Study

Acetylacetone (acacH) adsorption on ZnO (10-10) surface has been studied by a theoretical periodic approach using density functional theory. Two dissociative adsorption modes were investigated and compared to the most stable adsorption mode of formic acid. Acetylacetone appears as a suitable anchoring group for hybrid materials, with adsorption energies of the same order of magnitude as formic acid. IR spectra of the acac/ZnO systems were computed in order to determine the spectral signature of adsorption and, possibly, of each adsorption mode to follow the coordination of acac on ZnO at the experimental level. The results have been compared to Fourier transform infrared (attenuated total reflection-IR) experimental spectra. The present investigation points out the interest of acetylacetone as an anchoring group for the development of new ZnO-based functionalized hybrid layers for corrosion protection, light emitting diodes, photocatalytic systems, and dye-sensitized solar cells.

Electronic structure and optical spectra of catechol on TiO2nanoparticles from real time TD-DFT simulations

The electronic structure and the optical response of free catechol, [Ti(cat)(3)](2-) complex, and catechol bound to TiO(2) nanoclusters have been analysed using time dependent density functional theory (TD-DFT) performing calculations both in real time and frequency domains. Both approaches lead to similar results providing the basis sets and functionals are similar. For all cases, the simulated spectra agree well with the experimental ones. For the adsorption systems, the spectra show a band at 4.7 eV associated to intramolecular catechol π→π* transitions, and low energy bands corresponding to transitions from catechol to the cluster with a tail that is red-shifted when the coupling between the dye and the cluster is more effective. Thus, dissociative adsorption modes provide longer tails than the molecular mode. Although the bidentate complex is more stable than the monodentate, the energy difference between both is smaller when the cluster size increases. Small cluster models reproduce the main features of the optical response, however, the (TiO(2))(15) cluster constitutes the minimal size to provide a complete picture. In this case, the conventional TD-DFT (frequency domain) calculations are highly demanding computationally, while real time TD-DFT is more efficient and the calculations become affordable.

Probing the interaction of the amino acid alanine with the surface of ZnO [formula omitted

The adsorption modes and stability of the amino acid alanine (NH 2–CH(CH 3)–COOH) have been studied on the nonpolar single crystal surface of zinc oxide, ZnO ( 1 0 1 ¯ 0 ) , experimentally by X-ray photoelectron spectroscopy (XPS) and computationally using density functional theory (DFT). Deposition at 200 K was found to lead to the formation of multilayers identified by an XPS N1s peak at 401.7 eV assigned to the NH 3 + group, a fingerprint of the zwitterionic structure of alanine in the solid state. Heating to 300 K resulted in the removal of most of the multilayers with the remaining surface coverage estimated to 0.4 with respect to Zn cations. At this temperature most of the alanine molecules are found to be deprotonated (dissociated), yielding a carboxylate species (NH 2–CH(CH 3)–COO − (a) + OH (s); where O is surface oxygen, (a) for adsorbed and (s) for surface species). Further heating of the surface resulted in a gradual decrease of the surface coverage and by 500 K a large fraction of adsorbed alanine molecules have desorbed from the surface. Total energy DFT computations of different adsorbate species identified two stable dissociative adsorption modes: bidentate and monodentate. The bidentate species with adsorption energy of 1.75 eV was found to be more stable than the monodentate species by about 0.7 eV.

Composition, structure, and stability of the rutileTiO2(110)surface: Oxygen depletion, hydroxylation, hydrogen migration, and water adsorption

A comprehensive phase diagram of lowest-energy structures and compositions of the rutile ${\text{TiO}}_{2}(110)$ surface in equilibrium with a surrounding gas phase at finite temperatures and pressures has been determined using density-functional theory in combination with a thermodynamic formalism. The exchange of oxygen, hydrogen, and water molecules with the gas phase is considered. Particular attention is given to the convergence of all calculations with respect to lateral system size and slab thickness. In addition, the reliability of semilocal density functionals in describing the energetics of the reduced surfaces is critically evaluated. For ambient conditions the surface is found to be fully covered by molecularly adsorbed water. At low coverages, in the limit of single isolated water molecules, molecular and dissociative adsorption modes become energetically degenerate. Oxygen vacancies form in strongly reducing, oxygen-poor environments. However, already at slightly more moderate conditions it is shown that removing full ${\text{TiO}}_{2}$ units from the surface is thermodynamically preferred. In agreement with recent experimental observations it is furthermore confirmed that even under extremely hydrogen-rich environments the surface cannot be fully hydroxylated, but only a maximum coverage with hydrogen of about 0.6--0.7 monolayer can be reached. Finally, calculations of migration paths strongly suggest that hydrogen prefers diffusing into the bulk over desorbing from the surface into the gas phase.

Density Functional Theory Study of Methanol Decomposition on the CeO2(110) Surface

Methanol decomposition on the stoichiometric CeO2(110) surface has been investigated using density functional theory slab calculations. Three possible initial steps to decompose methanol by breaking one of three bonds (O-H, C-O and C-H) of methanol were examined. The relative order of thermodynamic stability for the three possible bond scission steps is: C-H > O-H > C-O. We further isolated transition state and determined activation energy for each bond-breaking mode using the nudged elastic method. The activation barrier for the most favorable dissociation mode, the O-H bond scission, is 0.3 eV on the (110) surface. An even lower activation barrier ( C-O > C-H. Our results are consistent with the previous experimental observation that methoxy is the dominant surface species after a stoichiometric CeO2 surface was exposed to methanol. The experimentally observed methanol chemistry was determined bymore » the kinetics of initial dissociation steps rather than the thermodynamic stability of product states. Surface coverage of methanol was found to affect the relative stability between molecular and dissociative adsorption modes. Dissociative adsorption modes are preferred thermodynamically for methanol coverage up to 0.5 ML but only molecular adsorption was stable at full monolayer coverage. This work was supported by a Laboratory Directed Research and Development (LDRD) project of the Pacific Northwest National Laboratory (PNNL). The computations were performed using the Molecular Science Computing Facility in the William R. Wiley Environmental Molecular Sciences Laboratory (EMSL), which is a U.S. Department of Energy national scientific user facility located at PNNL in Richland, Washington. Computing time was made under a Computational Grand Challenge “Computational Catalysis”. Part of the computing time was also granted by the National Energy Research Scientific Computing Center (NERSC).« less