The probiotic Bacillus subtilis represents an efficient, environmentally friendly biocontrol agent to address the problem of evolving, mutation, and dissemination of multidrug-resistant bacteria. In the current study, B. subtilis 2118 strain was screened based on an insert fragment from a large yellow croaker cDNA library damage effect on the B. subtilis host. The supernatant of B. subtilis 2118 displayed a wide-spectrum antibacterial activity against one Gram+ and five Gram- bacteria, including Staphylococcus aureus, Aeromonas hydrophila, A. veronii, Escherichia coli, Vibrio alginolyticus, and V. parahemolyticus. It was further found that B. subtilis 2118 crude protein displayed bactericidal activity against indicator bacteria S. aureus and A. hydrophila with MIC of 187.50 μg/mL and 375.00 μg/mL, and MBC of both 375.00 μg/mL. The mechanism studies indicated that B. subtilis 2118 crude protein was mainly involved in collapse of cell membrane, cytoplasm agglutinating and outflow, and increasing membrane permeability. Besides these, the crude protein has potential of binding bacterial DNA, and probably interfering protein synthesis or degrading protein. Furthermore, B. subtilis 2118 crude protein maintains stable antibacterial activity even when pH 3–11, temperature 25–100 °C, UV radiation 0–60 min, and different proteases handling. In addition, B. subtilis 2118 crude protein has scarce hemolysis and less cytotoxicity towards 293 T and PCK cells. Taken together, B. subtilis 2118 strain and its crude protein have strong potential as alternative agents for antibiotics in aquaculture.
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