Disruption Of Electrostatic Interactions Research Articles

Dysregulation of mitochondria, apoptosis and mitophagy in Leber’s hereditary optic neuropathy with MT-ND1 3635G>A mutation

Leber’s hereditary optic neuropathy (LHON) is a maternal inherited disorder, primarily due to mitochondrial DNA (mtDNA) mutations. This investigation aimed to assess the pathogenicity of m.3635G>A alteration known to confer susceptibility to LHON. The disruption of electrostatic interactions among S110 of the MT-ND1 and the side chain of E4, along with the carbonyl backbone of M1 in the NDUFA1, was observed in complex I of cybrids with m.3635G>A. This disturbance affected the complex I assembly activity by changing the mitochondrial respiratory chain composition and function. In addition, the affected cybrids exhibited notable deficiencies in complex I activities, including impaired mitochondrial respiration and depolarization of its membrane potential. Apoptosis was also stimulated in the mutant group, as witnessed by the secretion of cytochrome c and activation of PARP, caspase 3, 7, and 9 compared to the control. Furthermore, the mutant group exhibited decreased levels of autophagy protein light chain 3, accumulation of autophagic substrate P62, and impaired PINK1/Parkin-dependent mitophagy. Overall, the current study has confirmed the crucial involvement of the alteration of the m.3635G>A gene in the development of LHON. These findings contribute to a deeper comprehension of the pathophysiological mechanisms underlying LHON, providing a fundamental basis for further research.

Comonomer effects on co-permeation of methanol and acetate in cation exchange membranes

Co-permeation in hydrated, dense polymer membranes is crucial to many applications from energy conversion (i.e. photoelectrochemical CO2 reduction cells) to liquid separation (i.e. pervaporation), where such membranes are challenged with complex mixtures of species. For instance, a major challenge to the realization of efficient CO2 reduction cells is the design of ion exchange membranes with sufficient conductivity and minimal permeation of CO2 reduction products (e.g. methanol and acetate), such that understanding permeation and co-permeation behavior of these solutes in ion exchange membranes is needed. Previously, the transport behavior of Nafion® 117 and crosslinked cation exchange membranes prepared with poly(ethylene glycol) diacrylate (PEGDA, crosslinker) and 2-acrylamido-2-methyl-1-propanesulfonic acid (AMPS, sulfonated comonomer) to methanol and sodium acetate was investigated and distinct changes in permeabilities of these membranes to sodium acetate was observed in co-permeation with methanol. To further investigate this co-permeation behavior, we modify the PEGDA-AMPS structure by varying the negatively-charged AMPS content with three different comonomers, acrylic acid (AA, n = 0), 2-hydroxylethyl methacrylate (HEMA, n = 1), and poly(ethylene glycol) methacrylate (PEGMA, n = 5), where n represents the number of ethylene oxide repeat units in each comonomer. While the observed permeability to sodium acetate in co-permeation with methanol was increased for membranes with comonomers with short pendant groups (PEGDA-AMPS/AA and PEGDA-AMPS/HEMA), it remained relatively consistent for PEGDA-AMPS/PEGMA membranes. While the underlying causes of this type of behavior remains unresolved, we propose a combination of assisted transport by methanol and disruption of electrostatic interactions by pendant ethylene oxide repeat units based on our experiments. Overall, such differences in transport behavior underscore the need for increased understanding of emergent co-permeation behavior in hydrated, dense polymer membranes.

Insights into the Activation Mechanism of the ALX/FPR2 Receptor.

The formyl peptide receptor 2 (ALX/FPR2), a G-protein-coupled receptor (GPCR), plays an important role in host defense and inflammation. This receptor can be driven as pro- or anti-inflammatory depending on its agonist, such as N-formyl-Met-Leu-Phe-Lys (fMLFK) and resolvin D1 (RvD1) or its aspirin-triggered 17 (R)-epimer, AT-RvD1, respectively. However, the activation mechanism of ALX/FPR2 by pro- and anti-inflammatory agonists remains unclear. In this work, on the basis of molecular dynamics simulations, we evaluated a model of the ALX/FPR2 receptor activation process using two agonists, fMLFK and AT-RvD1, with opposite effects. The simulations by both fMLFK and AT-RvD1 induced the ALX/FPR2 activation through a set of receptor-core residues, in particular, R205, Q258, and W254. In addition, the activation was dependent on the disruption of electrostatic interactions in the cytoplasmic region of the receptor. We also found that in the AT-RvD1 simulations, the position of the H8 helix was similar to that of the same helix in other class-A GPCRs coupled to arrestin. Thus our results shed light on the mechanism of activation of the ALX/FPR2 receptor by pro-inflammatory and pro-resolution agonists.

Towards mapping electrostatic interactions between Kdo2-lipid A and cationic antimicrobial peptides via ultraviolet photodissociation mass spectrometry.

Cationic antimicrobial peptides (CAMPs) have been known to act as multi-modal weapons against Gram-negative bacteria. As a new approach to investigate the nature of the interactions between CAMPs and the surfaces of bacteria, native mass spectrometry and two MS/MS strategies (ultraviolet photodissociation (UVPD) and higher energy collisional activation (HCD)) are used to examine formation and disassembly of saccharolipid·peptide complexes. Kdo2-lipid A (KLA) is used as a model saccharolipid to evaluate complexation with a series of cationic peptides (melittin and three analogs). Collisional activation of the KLA·peptide complexes results in the disruption of electrostatic interactions, resulting in apo-sequence ions with shifts in the distribution of ions compared to the fragmentation patterns of the apo-peptides. UVPD of the KLA·peptide complexes results in both apo- and holo-sequence ions of the peptides, the latter in which the KLA remains bound to the truncated peptide fragment despite cleavage of a covalent bond of the peptide backbone. Mapping both the N- and C-terminal holo-product ions gives insight into the peptide motifs (specifically an electropositive KRKR segment and a proline residue) that are responsible for mediating the electrostatic interactions between the cationic peptides and saccharolipid.

Self-assembly of caseinomacropeptide as a potential key mechanism in the formation of visible storage induced aggregates in acidic whey protein isolate dispersions

Visible aggregates formed during storage in acidic whey protein isolate (WPI) dispersions represent a challenge to the beverage industry. Batch-to-batch variations are observed that prevents consistent quality and shelf-life prediction. Heat-treatment of WPI dispersions at 120 °C for 20 s instead of conventional heating at 95 °C for 180 s often prevents the aggregate formation, and varying levels of divalent cations were proposed to contribute to the observed batch-to-batch variations. In this study, the composition of the visible aggregates was examined. Caseinomacropeptide (CMP) was enriched in the visible aggregates compared with the surrounding clear liquid. Disruption of electrostatic interactions between glycosylated and non-glycosylated CMPs were studied by addition of calcium, acidification, and enzymatic de-sialidation. The treatment strategies each significantly decreased time-dependent turbidity development in acidic WPI dispersions. This suggests that the storage-induced aggregates may be prevented by disruption of electrostatic interactions between negatively-charged sialic acid residues and positively-charged amino acids.

High-pressure refolding of bikunin: efficacy and thermodynamics.

Bikunin is a glycosylated protein that aggregates extensively during mammalian cell culture, resulting in loss of activity, loss of native secondary structure, and the formation of nonnative disulfide bonds. We investigated the use of high hydrostatic pressure (1000-3000 bar) for the refolding of bikunin aggregates. The refolding yield obtained with pressure-modulated refolding at 2000 bar was 70 (+/-5%) by reverse-phase chromatography (RP-HPLC), significantly higher than the value of 55 (+/-6%) (RP-HPLC) obtained with traditional guanidine HCl "dilution-refolding." In addition, we determined the thermodynamics of pressure-modulated refolding. The change in volume for the transition of aggregate to monomer DeltaV(refolding) was calculated to be -28 (+/-5) mL/mole. Refolding was accompanied by a loss of hydrophobic exposure, resulting in a positive contribution to the DeltaV(refolding). These findings suggest that the disruption of electro-static interactions or the differences in size of solvent-free cavities between the aggregate and the monomer are the prevailing contributions to the negative DeltaV(refolding).

Mechanism of activation of the gastric aspartic proteinases: pepsinogen, progastricsin and prochymosin.

The gastric aspartic proteinases (pepsin A, pepsin B, gastricsin and chymosin) are synthesized in the gastric mucosa as inactive precursors, known as zymogens. The gastric zymogens each contain a prosegment (i.e. additional residues at the N-terminus of the active enzyme) that serves to stabilize the inactive form and prevent entry of the substrate to the active site. Upon ingestion of food, each of the zymogens is released into the gastric lumen and undergoes conversion into active enzyme in the acidic gastric juice. This activation reaction is initiated by the disruption of electrostatic interactions between the prosegment and the active enzyme moiety at acidic pH values. The conversion of the zymogen into its active form is a complex process, involving a series of conformational changes and bond cleavage steps that lead to the unveiling of the active site and ultimately the removal and dissociation of the prosegment from the active centre of the enzyme. During this activation reaction, both the prosegment and the active enzyme undergo changes in conformation, and the proteolytic cleavage of the prosegment can occur in one or more steps by either an intra- or inter-molecular reaction. This variability in the mechanism of proteolysis appears to be attributable in part to the structure of the prosegment. Because of the differences in the activation mechanisms among the four types of gastric zymogens and between species of the same zymogen type, no single model of activation can be proposed. The mechanism of activation of the gastric aspartic proteinases and the contribution of the prosegment to this mechanism are discussed, along with future directions for research.

Collagen binding induces changes in its platelet integrin receptor alpha2beta1

Integrins can signal upon binding of their ligand, presumably because of conformational changes induced by ligand-binding. It has been postulated that ligand binding causes changes in the affinity of the integrin to its ligand. In order to test for ligand-induced change in the affinity of platelet alpha beta platelets were passaged through a column of fibrillar collagen and stringent lysis conditions were used to remove all low-affinity receptors. A high-affinity fraction left on the collagen could be eluted with dithiothreitol (DTT) and 2% Sodium dodecyl sulfate (SDS). Antibodies raised against this fraction, identified alpha beta Western-blotting. Functional tests performed with the antibodies confirmed the involvement of the high-affinity proteins in platelet-collagen interactions attributed to alpha beta : inhibition of collagen-specific platelet adhesion and aggregation. EDTA, chaotropic agents or low pH did not elute the high affinity fraction of alpha beta. However, DTT followed by acetic acid did, which indicates that the steps necessary to disrupt the high-affinity collagen alpha beta bond are reduction of disulfide bond(s) followed by disruption of electrostatic interactions. Our data 2 1 suggest that (i) ligand binding induces the formation of a new disulfide bond in a fraction of alpha beta, (ii) that this bond is an intrareceptor, and (iii) that this change increases the affinity of the receptor to its ligand. to collagen, labelled viable 2 1 by 2 1 2 1 2 1 2 1

Comparison of the Salt-Dependent Self-Association of Brain and Erythroid Spectrin

The self-association of ovine brain spectrin in 0.1-1.5 M NaCl (pH 7.5) was studied using sedimentation velocity and sedimentation equilibrium techniques. Brain spectrin is tetrameric at sedimentation equilibrium at a 0.13 M ionic strength at 18-37 degrees C and at ionic strengths of up to 0.33 M at 20 degrees C. At ionic strengths greater than 0.33 M at 20 degrees C, the brain spectrin tetramer is destabilized, resulting in both dissociation to dimers and indefinite association to higher oligomers, in a manner similar to that seen with erythroid spectrin. The equilibrium constants describing all steps in the association involving the addition of dimers are around 15-fold higher for brain spectrin than for erythroid spectrin, at ionic strengths of > or = 0.43 M. We propose that the stronger association of brain spectrin compared to that of erythroid spectrin is due to a relative inability of brain spectrin to form closed dimers. Sedimentation velocity analysis confirms that brain spectrin readily forms open dimers and that the association of open dimers is not kinetically trapped even at 2 degrees C. Our results suggest that the destabilization of spectrin tetramers in high-ionic strength conditions is due to increased independent movement of the alpha and beta subunits resulting from disruption of electrostatic interactions. The greater stability of brain spectrin oligomers relative to those of erythroid spectrin is due to stronger nonelectrostatic interactions which stabilize the rigidity of the individual subunits and thereby increase the conformational strain associated with dimer closure.

Effects of neutral salts on the circular dichroism spectra of ribonuclease A and ribonuclease S.

The circular dichroism (CD) spectra of ribonuclease A, ribonuclease S, and N-acetyltyrosineamide were recorded as a function of pH in the presence of various concentrations of inorganic salts. Above pH 9.0 salting-in of tyrosine residues increases their intramolecular associations. This association enhances the contribution from these residues to the CD spectrum leading to an apparent titration curve that is shifted toward lower pH. The data indicate that unfolding of ribonuclease A and S by inorganic salts does not begin with disrupting existing electrostatic interactions. But, as the unfolding process progresses, disruption of electrostatic interactions may take place. This is consistent with our previous calorimetric studies which suggest that unfolding of ribonuclease A by salts proceeds initially by energetically favorable solvation of the folded protein. An increase in ellipiticity at 275 nm of partially unfolded protein in salt was observed as the pH was changed from 7.0 to 4.0. This observation may suggest that the isothermal unfolding of the protein by salts at low pH proceeds through an intermediate step which involves histidine residues and causes a conformational change in the tyrosine's asymmetric environment.