The objective of this investigation is to analyze the migration behaviours and self-organisation properties of aggregate-asphalt particle system. The three-dimensional discrete element dynamic compaction model was established, and the accuracy and reliability were validated by self-developed particle migration tracking test. The evaluation indices of aggregate particles was measured to investigate the migration behaviours of aggregates and its evolution law. The self-organisation behaviours of aggregate-asphalt particle system were explored combined with the contact behaviours. The results indicate that the migration process of aggregate particles can be delimited into three stages of compaction degree lower than 50%, from 50% to 70%, and above 70%. The larger the aggregate size, the more significant the rotation migration. Under the combined effect of migration and contact, the coarse aggregates migrate to find stable contact points to self-organize the skeleton structure. Asphalt mortar fills the voids eliminated to self-organize the dense structure.