Economically valuable volatile fatty acids (VFAs) are sustainably produced via fermentation processes. To use VFAs downstream, they must be recovered using technologies like electrodialysis (ED). Solute transport properties (i.e., partition coefficient (K), diffusion coefficient (D), and permeability (P=KD)) govern flux in ED. Therefore, to advance understanding of VFA flux through anion exchange membranes (AEMs) in ED, we aimed to elucidate the relative contributions of VFA partitioning and mobility to their flux. Accordingly, for VFAs of different sizes (C1–C5) and inorganic anions (Cl–, Br–), we measured their fluxes during ED, permeabilities, and partition coefficients, and calculated the diffusion coefficients. We then evaluated the correlations between flux and transport properties and between transport properties and anion physicochemical properties. Results showed VFA flux had a strong correlation with permeability (R2=0.94, p<0.01), consistent with flux described by the Nernst-Planck equation. Further, while there was a negative correlation between VFA flux and partition coefficient (R2=0.46, p=0.21), there was a positive correlation between VFA flux and diffusion coefficient (R2=0.95, p<0.01) which showed VFA mobility governed VFA flux. We observed a negative correlation between VFA diffusion coefficient and carbon–chain length which was attributed to steric hindrance, and a positive correlation between partition coefficient and carbon chain-length which we attributed to hydrophobicity and polarizability. This work provides fundamental insight on interactions between VFAs and AEMs which affect anion flux during ED.