The work proffers a novel Bi2Fe4O9 based n-p/n hetero-homojunction that offers excellent photocatalytic activity towards mitigation of three potential pharmaceutical and agrochemical pollutants. Nanoparticles of Prunus Amygdalus Dulcis shell derived carboxyl functionalized reduced graphene oxide (rGO) were encrusted over the surface of hydrothermally fabricated Bi2Fe4O9 nanoplates. Further, hydroxyl functionalization of fabricated composites was performed using beta-cyclodextrin (β-CD) and the fabricated materials were utilized for oxidative degradation of doxorubicin, levofloxacin drugs and malathion pesticide. The proffered modification not only enhanced the catalytic activity but also protected the surface of Bi2Fe4O9, which resulted 89.06 % and 86.84 % suppression in leaching of Fe and Bi ions as that of pristine bismuth ferrite (BF) was achieved with this beneficial modification. Practical viability of fabricated hetero-homojunction was testified via treating real pharmaceutical wastewater at lower concentration. Mott-Schottky (MS), Diffuse reflectance spectroscopy (DRS) and Kelvin Probe Force Microscopy (KPFM) studies were employed to investigate the band structure and charge transfer mechanism of fabricated n-p/n hetero-homojunction.