The direct oxidation of methane to methanol (DOMM) at mild conditions is an enormous attractive yet highly challenging, which is known as the “Holy Grail” reaction. In this work, we prepare the PdxCuy NCs supported on mesoporous sulfur-carbon materials and investigate their catalytic DOMM performance. The Pd14Cu1 NCs exhibits the excellent DOMM performance with the productivity of 34.3 mmol g−1 h−1 and the selectivity of 92.3 % at 150 °C when H2/O2 as active oxygen species, which was obviously superior to other PdCu catalysts. The enhanced performance of Pd14Cu1 NCs in DOMM is attributed to the non-crystalline atomic arrangement of tiny cluster structures and the synergistic electronic effect between Pd and Cu atoms, which can reduce the desorption temperature for methane, improve the in-situ generation of H2O2, and provide more active oxygen. The time-resolved in situ diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) demonstrated that a radical-involved reaction pathway on Pd14Cu1 NC. This work provides the understanding for synergistic effect dual metallic and helps to design highly efficient and selective catalysts for the direct oxidation of CH4.