Different Types Of Organic Matter Research Articles

Nutrient-loaded seagrass litter experiences accelerated recalcitrant organic matter decay

High coastal nutrient loading can cause changes in seagrass chemistry traits that may lead to variability in seagrass litter decomposition processes. Such changes in decomposition have the potential to alter the carbon (C) sequestration capacity within seagrass meadows (‘blue carbon’). However, the external and internal factors that drive the variability in decomposition rates of the different organic matter (OM) types of seagrass are poorly understood, especially recalcitrant OM (i.e. cellulose-associated OM and lignin-associated OM), thereby limiting our ability to evaluate the C sequestration potential. It was conducted a laboratory incubation to compare differences in the decomposition of Halophila beccarii litter collected from seagrass meadows with contrasting nutrient loading histories. The exponential decay constants of seagrass litter mass, cellulose-associated OM and lignin-associated OM were 0.009–0.032, 0.014–0.054 and 0.009–0.033 d−1, respectively. The seagrass litter collected from meadows with high nutrient loading exhibited greater losses of mass (25.0–41.2 %), cellulose-associated OM (2.8–18.5 %) and lignin-associated OM (9.6–31.2 %) than litter from relatively low nutrient loading meadows. The initial and temporal changes of the litter nitrogen (N) and phosphorus (P) concentrations, stoichiometric ratios of lignin/N, C/N, and C/P, and cellulose-associated OM content, were strongly correlated with the losses of litter mass and different types of OM. Further, temporal changes of litter C and OM types, particularly the OM and labile OM concentrations, were identified as the main driving factors for the loss of litter mass and loss of different OM types. These results indicated that nutrient-loaded seagrass litter, characterized by elevated nutrient levels and diminished amounts of recalcitrant OM, exhibits an accelerated decay rate for the recalcitrant OM. These differences in litter quality would lead to a reduced contribution of seagrass litter to long-term C stocks in eutrophic meadows, thereby weakening the stability of C sequestration. Considering the expected changes in seagrass litter chemistry traits and decay rates due to long-term nutrient loading, this study provides useful information for improving C sequestration capabilities through effective pollution management.

Aporrectodea caliginosa life history traits are improved by positive earthworm interaction and organic matter addition

Earthworm species interact with each other in soils, but these interactions are poorly understood. Moreover, these key soil organisms are influenced by abiotic soil components such as organic matter. Here, we investigated the influence of Allolobophora chlorotica and Aporrectodea nocturna, two earthworm species from different ecological categories, on the incorporation of organic matter, reproduction and weight change of the endogeic Aporrectodea caliginosa. Two different types of organic matter i) a compost and ii) a fresh refined organic material, both from green waste, were used. Earthworm parameters were monitored during an 8-weeks laboratory experiment using a vineyard soil in order to identify positive and negative interactions between species. Irrespective of species, earthworms interacted preferentially with smaller particles, more decomposed and with a lower C/N ratio. For an equivalent earthworm biomass, similar amount of green compost was incorporated by A. caliginosa and A. nocturna. However, A. chlorotica did not bury this material. The green compost increased the reproduction rate of A. caliginosa when associated to A. chlorotica. Moreover, the association with the epi-anecic A. nocturna increased the reproduction rate of A. caliginosa with the addition of refined organic matter (fresh material). Furthermore, in both earthworm associations, the weight loss of A. caliginosa was reduced by the addition of green compost to the soil surface. These results highlight the importance of earthworm interactions in maintaining populations, and emphasized the need of field studies to confirm these interactions, particularly in the context of soil fertility where organic amendments are often applied.

Bacterioplankton diversity in the estuarine regions of two peninsular rivers: A metagenomic approach

ObjectiveIn this present study we evaluated the bacterioplankton diversity employing a culture independent high throughput 16srRNA pyro-sequencing technique in two selected estuarine regions that belongs to two peninsular rivers on which the people living in the area heavily depend for their water needs. In spite of several advantages to metagenome based bacterioplankton diversity analysis, no such studies have been carried out in the region so far. MethodsSamples were collected from three different sites for each estuaries. A comparative study on physico-chemical analysis was done on water samples from the estuaries using standard analytical methods. High-throughput sequencing reads obtained from metagenomic sequencing were classified into a taxonomic category using the NCBI taxonomy reference database. ResultIn the study we observed higher percentage composition of bacterioplanktons appertaining to the actinobacteria, cyanobacteria, and proteobacteria groups which can be attributed to higher levels of water nutrients such as nitrates, nitrites and phosphates. Firmicutes identified in the samples indicates the faecal contamination in the water. Apart from these numerous nitrogen-metabolizing bacteria, such as Roseobacter, Nitratiruptor, and Sulfitobacter, were present, as observed. One of the most common bacterioplankton species that is responsible for the breakdown of different types of organic matter is the Roseobacter. Similarly, nitratiruptor is a type of bacteria that reduces nitrite and can break down nitrate in water. Sulfitobacter and Pseudoruegeria are other two strains observed in both the Chaliyam and Dharmadam estuarine regions. It is reported that the Sulfitobacter strains are predominantly distributed in the areas of oil polluted marine environments;it has been associated with hydrocarbon removal from seawater. ConclusionMost of the diverse bacterioplanktons reported are capable of utilizing the dissolved organic matter for their growth and functioning. Isolation of such bacterial communities is having great significance in the aspects of waste water treatment and pollution abatement. We did not observe any major difference in diversity of particle associated bacterioplanktons in the two estuaries investigated. However, there was a significant variation observed in the diversity of free living bacterioplankton attributed to changes in physio-chemical parameters. Overall, metagenomics is a more effective and insightful way to examine microbial populations than standard culture techniques.

Pyrite Characteristics in Lacustrine Shale and Implications for Organic Matter Enrichment and Shale Oil: A Case Study from the Triassic Yanchang Formation in the Ordos Basin, NW China.

Pyrite is widely distributed in lacustrine shales and has become a research focus in unconventional oil and gas exploration. Pyrite morphology is useful for identifying different types of organic matter and assessing shale oil enrichment in organic-rich shale. Abundant pyrite is developed in the source rocks from the Chang 7 Member of the Yanchang Formation in the Ordos Basin, NW China. However, the relationship between different pyrite types and the differential enrichment of shale oil still needs to be clarified. The organic geochemistry, petrology, and isotopic composition of the Chang 7 Member samples were analyzed. The significance of pyrite types and sulfur isotopic compositions as indicators of depositional environments and shale oil enrichment was emphasized. The Chang 7 shales contain three pyrite morphologies, framboidal pyrite (type A), spherulitic pyrite (type B), and euhedral and anhedral pyrite (type C), and their aggregates. The sulfur isotopic compositions of pyrite (δ34Spy) in Chang 7 shales with different pyrite types exhibited regular patterns. The δ34S values of types A, B, and C pyrites were sequentially positive overall (average values are -2.739, 2.201, and 7.487‰ in sequence), indicating that type A pyrite was formed during the syn-sedimentary to early diagenetic stage and types B and C pyrites were formed during the early to middle diagenetic stage. Types A, B, and C pyrites showed sequentially increasing kerogen type index values and kerogen carbon isotope values (mean values of -31.59, -28.70, and -26.45‰, successively), indicating that the horizons where types A, B, and C pyrites developed correspond to types I, II, and III organic matter, respectively. Strong correlations between the pyrite content and oil components reveal that pyrite indicates shale oil enrichment. Moreover, variations in pyrite type significantly influenced the enrichment behavior of shale oil. Types A and B pyrites contributing to reservoir space showed shale oil enrichment. They promoted saturated hydrocarbon enrichment at >15% pyrite content, whereas type C pyrite did not indicate shale oil enrichment. These findings provide new insights into the differential enrichment of organic matter and shale oil and valuable guidance for the large-scale exploration and development of shale oil resources.

Pengaruh Pemberian Berbagai Macam Bahan Organik terhadap Ketersediaan Hara Nitrogen, Fosfor dan Kalium serta Serapan Nitrogen oleh Jagung (Zea mays L.) pada Tanah Ultisols

Ultisols distributes spreadly in Indonesia, but this soil has low fertility. Therefore, the application of organic matter (OM) is a common management to increase this soil fertility. The purpose of this study was to determine the role of different types of OM (originated from animals and plants) on the availability of nitrogen, phosphorus, and potassium as well as nitrogen uptake in maize in Ultisols. Soil with a mass of 5 kg without organic matter (control), with the application of chicken manure, cow manure, swallow manure, kirinyuh, babadotan, and kalopo manure were incubated in experimental pots for two weeks at 60% field capacity. After the completion of the incubation period, soil sub-sampling was carried out for the determination of available N, available P and exchangeable K. Furthermore, in each experimental pot, corn seeds were planted, and the observations of dried-weight of corn and nitrogen uptake in corn were observed in a vegetative phase. The results showed that the application of different types of organic matter increased soil pH, nitrate content, exchangeable K, plant dried-weight and plant nitrogen uptake. The content of ammonium and available P was not affected by OM addition. The results also showed that OM derived from animals resulted in higher increases in pH and exchangeable K than those derived from plants. However, OM derived from plants resulted in higher increases in nitrate, plant dry weight and better plant N uptake than OM from animal waste. The results of this study show that the application of OM results in increases in some soil chemical properties, in which the degree of increases in soil chemical characteristics is controlled by the OM origin.

NPK CONCENTRATION IN LIQUID MAGGOT FERTILIZER MADE FROM DIFFERENT ORGANIC RESOURCES ANALYZED

The overuse of chemical fertilizers can have detrimental effects on soil quality. It is important for farmers to find sustainable alternatives. One possible solution being explored is the use of liquid maggot derived from organic sources. This study aimed to determine the most suitable composition that fulfills plant needs and follows established guidelines. The research approach employed a qualitative descriptive method to assess the impacts of three treatments using different types of organic matter: fruit waste, restaurant waste, and palm oil cake. Phosphorus and potassium concentrations were determined through MP-AES analysis while nitrogen content was measured using the Kjeldahl method. The findings revealed that only the treatments involving fruit waste and restaurant waste met the recommended potassium levels. However, these treatments fell short of meeting requirements for other essential nutrients. As a result, additional research is needed to assess nutrient concentrations in different organic substances.

Leaching of organic matter from microplastics and its role in disinfection by-product formation

Natural organic matter (NOM) is the primary precursor of disinfection by-products (DBPs). However, as emerging environmental contaminants continue to increase in natural waters, there is a possibility of new precursors of DBPs. We investigated the potential of microplastics (MPs), a growing environmental concern, for leaching organic matter (OM) and subsequent DBP formation. Two experimental setups were used, including chlorinated water containing MPs (Cl2-MP), and non-chlorinated water containing MPs (Non-Cl2-MP), using polyethylene (PE), polyethylene tetrahydrate (PET), polypropylene (PP), and polyvinyl chloride (PVC) as MP materials. The UV absorbance spectra of Cl2-PET/PP/PVC showed peaks at 218 nm, which were significantly correlated with dissolved organic carbon (DOC), indicating lower aromaticity of the leached OM. The DOC concentrations in Cl2-MP samples were several times higher than those in Non-Cl2-MP samples. The leached OM from MPs formed trihalomethanes (THMs) and haloacetic acids (HAAs) in Cl2-MP samples. Among the MPs tested, PVC showed the highest total THM formation after 7 days, followed by PET, PE, and PP. Brominated THMs were predominant, while HAAs were highly chlorinated. THM formation increased with contact time for PE, PET, and PVC, and decreased for PP. Compared to THMs, the concentration of HAAs was low (highest total THM = 185.5 μg/L per g-MP and highest total HAA = 120.7 μg/L per g-MP). Further, the total THM concentration decreased and the total HAA concentration increased over the reaction period, indicating the leaching of different types of OM with increasing contact time. Additionally, the differences in the pattern of DOC leaching and DBP formation among different MPs suggested changes in the leached OM.

Differences in the Effect of Mn2+ on the Reverse Osmosis Membrane Fouling Caused by Different Types of Organic Matter: Experimental and Density Functional Theory Evidence.

Landfill leachate from some sites contains a high concentration of Mn2+, which may cause reverse osmosis (RO) membrane fouling during RO treatment. In this study, the effect of Mn2+ on RO membrane fouling caused by typical organic pollutants (humic acid (HA), protein (BSA), and sodium alginate (SA)) was systematically investigated, and it was found that Mn2+ exacerbates RO membrane fouling caused by HA, SA, and HBS (mixture of HA + BSA + SA). When the Mn2+ concentration was 0.5 mM and 0.05 mM separately, the membrane fouling caused by HA and SA began to become significant. On the other hand, with for HBS fouling only, the water flux decreased significantly by about 21.7% and further decreased with an increasing Mn2+ concentration. However, Mn2+ has no direct effect on BSA. The effect degrees to which Mn2+ affected RO membrane fouling can be expressed as follows: HBS > SA > HA > BSA. The density functional theory (DFT) calculations also gave the same results. In modeling the reaction of the complexation of Mn2+ with the carboxyl group in these four types of organic matter, BSA has the highest energy (-55.7 kJ/mol), which predicts that BSA binding to Mn2+ is the most unstable compared to other organic matter. The BSA carboxylate group also has the largest bond length (2.538-2.574 Å) with Mn2+ and the weakest interaction force, which provides a theoretical basis for controlling RO membrane fouling exacerbated by Mn2+.

Influence of organic matter on seawater battery desalination performance

A rechargeable seawater battery desalination (SWB-D) system stores energy in a battery cell while removing salts from saline water via a sodium superionic conductor membrane and an anion exchange membrane. However, the electrochemical performance often degrades owing to the organic fouling generated on the ion exchange membranes. In this study, we investigated the fouling behavior of the SWB-D system by individually dissolving three different types of organic matter—humic acid, sodium alginate, and bovine-serum-albumin. In terms of the salt-removal performance of the SWB-D system, gradual degradation was observed over three charging cycles using hydrophobic humic acid (~13 %) and bovine-serum-albumin (~18 %), whereas no degradation was caused by hydrophilic sodium alginate. Continuous water flow mitigated the fouling behavior, and a large volume of saline water enabled longer charging. The increase in the electrical resistance of the SWB-D system was measured in the presence of organic matter using electrochemical impedance spectroscopy and the four-electrode method. Additionally, the presence of fouling layer was identified using field-emission scanning electron microscopy, energy-dispersive X-ray spectroscopy, and Fourier-transform infrared spectrometry. In conclusion, the results demonstrated that the hydrophobic organic matter in the feed water could be unfavorable when operating the SWB-D system.

Combined use of positive matrix factorization and 13C[sbnd]15N stable isotopes to trace organic matter-bound potential toxic metals in the urban mangrove sediments

Coastal sediments act as sinks of sediment organic matter (SOM) and metals because of their special land–sea location and depositional properties. However, there are few reports on the correlation between the sources of organic matter (OM) and associated potential toxic metals (PTMs). In this study, we combined CN stable isotope analysis and positive matrix factorization to identify the matter and metal sources of OM and glomalin-related soil protein (GRSP) in an estuary under several decades of urbanization. The results of the positive matrix factorization (PMF) reveal a correlation between the sources of total sediment metals and the sources of OM-related metals. The sources of both SOM-bound PTMs and GRSP-bound PTMs are significantly related to the sources of total PTMs. OM sources were elucidated through 13C-15 N stable isotopes, and the potential sources of different types of OM differed. In addition, there is a significant correlation between OM-associated PTMs and organic matter sources. Interestingly, the functional groups of SOM were mainly influenced by multiple PTM sources but no OM source, while the functional groups of GRSP were regulated by a single metal source and OM source. This study deepened the understanding of the coupling between PTMs and SOM. The possibility of combined use of positive matrix factorization and 13C-15 N stable isotope tracing of metals as well as the sources of each metal fractions has been evaluated, which will provide new insights for the transportation of PTMs.

Characteristics and Geological Significance of Organic Matter Veins in Shale Reservoir: A Case Study of the Silurian Longmaxi Formation in Luzhou Area, Sichuan Basin

Organic matter serves as the hydrocarbon-generating parent material for shale reservoirs, in which organic pores are also important reservoir spaces. Different types of organic matter have wide differences in hydrocarbon generation and pore-forming ability. Based on the occurrence state of organic matter, in the over-mature Marine shale organic matter mainly includes in situ and migrated organic matter. It has been extensively studied on in situ organic matter and organic matter migrating into inorganic pores, while there are few reports of organic matter migrating into microfractures. In this study, the over-mature Marine shale reservoir in the first sub-member of the Silurian Longmaxi Formation in the Luzhou area of the Sichuan Basin is taken as an example. Core observation, optical microscope, high-precision large-view scanning (MAPS, modular automated processing system) and mineral analysis scanning (QEMSCAN, quantitative evaluation of minerals by scanning electron microscopy) were conducted to observe the morphological characteristics of organic matter veins, and then analyze the genesis and pore-forming characteristics of such organic matter. The results show that: ① Organic matter veins (OM veins) are soluble organic matter with fractures as an effective channel, and OM veins in the study section is easy to form under the condition of micro-fractures in the shale sweet segment after organic matter generating oil and before gas generation ② Organic matter in the OM veins are less efficient in pore-forming, with sparse pores and smaller pore sizes. The occurrence of fractures varies greatly, including horizontal fractures, oblique fractures and high-angle fractures, which are mostly developed in the Long111 and Long112 layers. ③ The development of OM veins can indicate better reservoir conditions, that is, the layers have strong hydrocarbon generation intensity (strong pore-forming ability of organic matter) and high brittle mineral content (strong reservoir compressibility). The new findings in this paper reveal that OM veins are instructive for the determination of geological–engineering sweet spots in the Longmaxi Formation in the Sichuan Basin, and also provide guidance for future research on occurrence form and geological significance of different types of organic matter.

Using mid-infrared diffuse reflectance spectroscopy to investigate the dynamics of soil aggregate formation in a clay soil

Soil organic carbon is a crucial parameter for assessing soil quality, and it significantly contributes to soil aggregation. However, the influence of different organic carbon components and groups on the formation of soil water-stable aggregates has not been thoroughly investigated. To examine it, a clay soil amended with two different types of organic matter (OM) at four input levels for 84 days. The ratio of peak area (RPA) of the mid-infrared (MIR) spectra was used to investigate the dynamic of specific compounds and soil aggregation during the decomposition of OM. The results showed three important aspects. Firstly, the amount and nature of OM input strongly influenced the formation of organic compounds during incubation, as well as the degree of soil aggregation. Furthermore, we observed that the C groups identified by MIR spectroscopy were highly dynamic. Thus, the approach of using a band of soil MIR spectra to infer the stability of a C group can be misleading. Secondly, the low C/N of alfalfa stimulated more microbial activity with 1.1 to 2.3 times more cumulative respiration than high C/N barley straw. The rapid degradation of alfalfa immediately formed water-stable aggregates and subsequently, the macroaggregates were reorganized by microbial activities and physical disturbance. In contrast, the slow decomposition of barley straw built up aggregates gradually in a hierarchical manner and in proportion to the amount of OM added. Alfalfa amendment caused a significant increase in the mean weight diameter (MWD) and a strong correlation with the RPA in the range of 1747–1500 cm−1 (r = 0.78). While aggregation due to barley straw treatment led a stronger relationship between MWD and RPA of 3000–2800 cm−1 (r = 0.89). The results suggest MIR spectra can be used to understand the dynamics of OM that build stable aggregates.

On the role of organic matter composition in fresh-water kaolinite flocculation

Organic matter has long been understood to affect fine sediment flocculation, yet the specific effects of different types of organic matter remain only partially understood. To address this knowledge gap, laboratory tank experiments were conducted in fresh water to investigate the sensitivity of kaolinite flocculation to varying organic matter species and contents. Three species of organic matter (xanthan gum, guar gum and humic acid) were investigated at varying concentrations. Results revealed a significant enhancement in kaolinite flocculation when organic polymers (xanthan gum and guar gum) were introduced. In contrast, the addition of humic acid had minimal influence on aggregation and floc structure. Notably, the nonionic polymer guar gum demonstrated greater efficacy in promoting the development of floc size compared to the anionic polymer, xanthan gum. We observed non-linear trends in the evolution of mean floc size (Dm) and boundary fractal dimension (Np) with increasing ratios of organic polymer concentration to kaolinite concentration. Initially, increasing polymer content facilitated the formation of larger and more fractal flocs. However, beyond a certain threshold, further increases in polymer content hindered flocculation and even led to the break-up of macro-flocs, resulting in the formation of more spherical and compact flocs. We further quantified the co-relationships between floc Np and Dm and found that larger Np values corresponded to larger Dm. These findings highlight the significant impact of organic matter species and concentrations on floc size, shape and structure, and shed light on the complex dynamics of fine sediment and associated nutrients and contaminants in fluvial systems.

Haitians’ perceptions of biogas produced via human excreta: An approach to the democratization of energy systems

The utilization of organic matter (OM) to produce biogas is an attractive alternative for promoting sustainable development, addressing energy shortages and waste disposal problems, creating jobs, and investing in sanitation systems. Thus, this alternative is becoming increasingly important in developing countries. This study investigated the perceptions of residents in Delmas district, Haiti, regarding the use of biogas produced via human excreta (HE). A questionnaire containing closed- and open-ended questions was administered for this purpose. Sociodemographic aspects had no influence on locals' willingness to use biogas produced via different types of OM. The novelty of this research is that democratization and decentralization of the energy system are possible in the Delmas district using biogas produced from various organic wastes. Socio-characteristics of the interviewees did not influence their willingness towards a possible adopt biogas-based energy from several types of degradable organic matter. The results showed that more than 96% of the participants agreed that HE could be used to produce biogas and reduce energy shortages in their locality. In addition, 93.3% of the interviewees thought this biogas could be utilized for cooking food. However, 62.5% of respondents argued that using HE to produce biogas could be dangerous. Bad smell and fear of biogas produced via HE are the major concerns of users. In conclusion, this research could guide stakeholders' decisions to better address the problems of waste disposal and energy shortages and to create new jobs in the target study area. The research findings could help decision-makers better understand the willingness of locals to invest in household digester programs in Haiti. Further research is required to investigate farmers ‘willingness to use digestates from biogas production.

Hydrocarbon generation mechanism of lamalginite- and telalginite-dominated source rocks in a saline lake basin: A case study of the Permian Lucaogou formation in the Jimusaer Sag, Junggar Basin

The hydrocarbon generation of source rocks is significantly influenced by organic matter type, chemical element composition, and structural characteristics of kerogen. We classified the organic matter types in the shale of the Lucaogou Formation, Jimusar Sag, Junggar Basin, using organic petrology and rock pyrolysis as well as kerogen element and Fourier transform infrared (FT-IR) spectroscopy analyses, and compared the hydrocarbon generation mechanisms of source rocks with different types of organic matter. The organic matter of the Lucaogou Formation contains mostly two types of hydrocarbon generating macerals, the lamalginite and the telalginite based on physical and optical properties (texture, fluorescence, and optical reflectance). The lamalginite is a continuous sheet of less than 5 μm thick and greater than 50 μm in length. It has strong yellow fluorescence. The telalginite occurs as discontinuous short strips or pear-shaped objects with length of 10–30 μm and relatively weak fluorescence. The lamalginite-dominated shale has higher atomic H/C and lower atomic O/C ratios, indicating better hydrocarbon generation potential, whereas the telalginite-dominated shale has higher N and S heteroatom contents. The results of FT-IR spectroscopy of the kerogen indicate that the lamalginite-dominated shale is rich in aliphatic groups with long linear methylene sequences. The aromatic groups content is relatively low, but the carboxyl/carbon group (CO) content is high. The aliphatic group content of the telalginite-dominated shale is relatively low, with short-branched chains. The aromatic group content is relatively high. The methyl vibration signal directly connected to the benzene ring is strong, and the sulfoxide (SO) group has a high-intensity peak. Our results provide new insights into distinguishing organic matter types in the Lucaogou Formation and understanding the hydrocarbon generation mechanisms of source rocks in saline lake basins.

Thermal behavior of modern and archeological enamel and dentin by in situ temperature‐dependent Raman spectroscopy

AbstractTeeth and bones are important bioarchives, which can be altered because of diagenesis or burning (cooking, funerary cremations, and fires). Though heating and diagenesis are different processes, an experimental heating of modern bioapatite reproduces in a short time effects similar to diagenetic processes occurring over geological time. The thermal behavior of modern and archeological human enamel and dentin using the in situ thermo‐Raman spectroscopy at 83–873 K was investigated to assess the structural changes in organic and mineral components of a tooth and their interrelationship. The ν1(PO4) vibrational mode in apatite is the most anharmonic and responsible for the reaction of the structure to external influences. The γiP isobaric Grüneisen parameters for archeological (0.41) and modern (0.24) enamel are different from those for fluor‐ (0.17) and chlorapatite (0.17), which indicates a stronger reaction of PO bonds in bioapatite PO4 tetrahedra to temperature changes as compared with geologic samples. The anomalies of the thermal dependences of the ν1(PO4) peak position and (T) autocorrelation function are caused by the combined effect of different factors such as breaking of hydroxyl and hydrogen bonds, the loss of adsorbed and structural water, collagen denaturation, organic phase combustion, and removal and relocation of B‐ and A‐type carbonate ions. The thermal (273, 313, 341, and 363 K) and cold (~160 K) denaturation of collagen is reflected in the ν1(PO4) and (T) dependences. The (T) differences between modern and archeological dentin and enamel are contingent on bioapatite composition (proportions of adsorbed and structural water, hydroxyl and carbonate ions, and trace elements as well as different types of organic matter — low‐molecular noncollagen compounds and high‐molecular collagen). The results obtained contribute to the knowledge about the thermal transformations of the mineral and organic phases of modern and archeological tooth tissues and allow their structural alterations to be evaluated.

Review: Complexation mechanism of organic matter and arsenic on iron-containing minerals

Arsenic pollution in groundwater is serious in many areas of the world. The interaction between arsenic, iron and organic matter has an important impact on the transformation and transportation of arsenic in groundwater. This review summarises work in three areas – namely, (a) interaction between different types of organic matter and arsenic, which forms arsenic–organic matter complexes through ligand exchange; (b) oxidation–reduction reaction of organic matter and iron-containing minerals and the formation of complexes between organic matter and iron ions; and (c) formation of ternary complexes of organic matter, arsenic and iron-containing minerals (connected by iron ion bridges) and their characterisation methods. This review has great theoretical and applied value for the discovery of the mechanism of arsenic pollution and the development of arsenic pollution control measures.

Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies.

ABSTRACTMicrobial communities, through their metabolism, drive carbon cycling in marine environments. These complex communities are composed of many different microorganisms including heterotrophic bacteria, each with its own nutritional needs and metabolic capabilities. Yet, models of ecosystem processes typically treat heterotrophic bacteria as a “black box,” which does not resolve metabolic heterogeneity nor address ecologically important processes such as the successive modification of different types of organic matter. Here we directly address the heterogeneity of metabolism by characterizing the carbon source utilization preferences of 63 heterotrophic bacteria representative of several major marine clades. By systematically growing these bacteria on 10 media containing specific subsets of carbon sources found in marine biomass, we obtained a phenotypic fingerprint that we used to explore the relationship between metabolic preferences and phylogenetic or genomic features. At the class level, these bacteria display broadly conserved patterns of preference for different carbon sources. Despite these broad taxonomic trends, growth profiles correlate poorly with phylogenetic distance or genome-wide gene content. However, metabolic preferences are strongly predicted by a handful of key enzymes that preferentially belong to a few enriched metabolic pathways, such as those involved in glyoxylate metabolism and biofilm formation. We find that enriched pathways point to enzymes directly involved in the metabolism of the corresponding carbon source and suggest potential associations between metabolic preferences and other ecologically relevant traits. The availability of systematic phenotypes across multiple synthetic media constitutes a valuable resource for future quantitative modeling efforts and systematic studies of interspecies interactions.IMPORTANCE Half of the Earth’s annual primary production is carried out by phytoplankton in the surface ocean. However, this metabolic activity is heavily impacted by heterotrophic bacteria, which dominate the transformation of organic matter released from phytoplankton. Here, we characterize the diversity of metabolic preferences across many representative heterotrophs by systematically growing them on different fractions of dissolved organic carbon. Our analysis suggests that different clades of bacteria have substantially distinct preferences for specific carbon sources, in a way that cannot be simply mapped onto phylogeny. These preferences are associated with the presence of specific genes and pathways, reflecting an association between metabolic capabilities and ecological lifestyles. In addition to helping understand the importance of heterotrophs under different conditions, the phenotypic fingerprint we obtained can help build higher resolution quantitative models of global microbial activity and biogeochemical cycles in the oceans.

Adsorption and surface reaction of isopropyl alcohol on SiO2 surfaces

In this study, we investigated the adsorption and surface reaction of isopropyl alcohol (IPA) gas on silicon dioxide (SiO2) surfaces. The temperature dependence of the decomposition behavior of IPA and the effect on the SiO2 surface, such as reduction of SiO2 during IPA treatment, were studied. The chemical structures of the SiO2 surfaces before and after IPA treatment were analyzed by x-ray photoelectron spectroscopy (XPS). The decomposition behavior of IPA was investigated using an in-line evaluation system equipped with a SiO2 reactor and Fourier-transform infrared spectroscopy (FT-IR). During IPA treatment at temperatures above 150 °C, different types of organic matter were deposited on the SiO2 surfaces depending on the temperature. SiO2 was not reduced, and its surface states were not changed at temperatures below 350 °C. In addition, we investigated the amount of trimethylaluminium (TMAl) adsorbed on SiO2 surface with and without IPA treatment. As a result, the amount of TMAl adsorbed on SiO2 surface was reduced by about 25% by the IPA treatment. We found that the organic matter obtained by IPA treatment partially inhibited the adsorption of the TMAl gas on SiO2 surfaces. These findings will be useful for the use of IPA in the advanced semiconductor manufacturing such as in area-selective processes.

Pore Structure of Organic Matter in the Lacustrine Shale from High to Over Mature Stages: An Approach of Artificial Thermal Simulation

The pore structure of organic matter (OM) is affected by the maturity and type of OM, and these exert an important control on the development of OM pores. However, it is often challenging to distinguish between autochthonous and secondary OM. In this study, different types of OM were distinguished by means of morphology and the form of its occurrence under scanning electron microscopy (SEM) observation. Pyrolyzed samples were used to obtain pore structures of autochthonous and secondary OM from a lacustrine shale from high to over mature stages. The SEM observations indicated that the secondary OM is porous, whereas the autochthonous OM is nonporous. Further, nitrogen adsorption data showed that nanopores in the autochthonous OM are blocked in non-extracted samples and reoccurred after extraction, whereas nanopores in the secondary OM remain open from high to over mature stages. Moreover, the pore structure, i.e., pore type and pore size, differed for autochthonous and secondary OM in the lacustrine shale. For instance, nanopores in the autochthonous OM were micropores (smaller than 1.5 nm); nanopores in the secondary OM were mesopores (ranging from 5 to 20 nm) and micropores. Nanopores in the autochthonous OM were formed at reflectance values (Ro) of 1.50%, but they were slightly destroyed at the over mature stage. Nanopores in the secondary OM were formed at 2.00% Ro and were preserved. Therefore, the development of OM nanopores in the lacustrine shale was synchronously affected by the type of OM and maturity. Furthermore, nanopores in the secondary OM were more developed than those in the autochthonous OM; thus, the OM nanopores at the high mature stage belonged to the autochthonous OM, and those at the over mature stage mainly belonged to the secondary OM. Besides, the nanopores in the autochthonous OM are easily blocked. Therefore, the secondary OM is important to the development of OM nanopores in the lacustrine shale at the over mature stage.