Diel Activity Research Articles

Human and predator presence shape diel activity of urban red squirrels

In urban areas, wildlife has to adapt to human presence and novel predators such as pet species, including the altered conditions of the environment. In such novel settings, the timing of activity is crucial to minimize the risk of mortality. To do so, species may reduce total activity time by increasing activity peaks at specific moments or shifting activity times. We analyzed camera trap data from a citizen science project over four project phases, including spring and autumn before and during the SARS-CoV-2 lockdown, to understand the effects of human, pet (cat, dog), and predator (marten) presence on the activity patterns of urban red squirrels (Sciurus vulgaris; hereafter ‘squirrel’). We examined squirrel activity at seasonal and hourly resolutions in relation to human, garden, urban, and predator factors. We considered human presence as both a direct effect of lockdown and an indirect disturbance measured through urban variables. Results show that direct human presence during lockdown increased squirrel activity intensity in both seasonal and hourly patterns without reducing total activity time. Predator presence affected timing of activity, decreasing total daily activity. Pets, like cats, decreased activity at both resolutions, while martens had a limited effect detected only at the hourly resolution. During lockdown, squirrels may have increased their activity in gardens due to more anthropogenic resources (food or nesting material), but constant threats from pets force them to avoid certain areas despite the benefits. This highlights the delicate balance squirrels must maintain in adapting to human-altered environments while managing predation risks.

Evolution of Large Eyes in Stromboidea (Gastropoda): Impact of Photic Environment and Life History Traits.

Eyes within the marine gastropod superfamily Stromboidea range widely in size, from 0.2 to 2.3mm - the largest eyes known in any gastropod. Despite this interesting variation, the underlying evolutionary pressures remain unknown. Here, we use the wealth of material available in museum collections to explore the evolution of stromboid eye size and structure. Our results suggest that depth is a key light-limiting factor in stromboid eye evolution; here, increasing water depth is correlated with increasing aperture width relative to lens diameter, and therefore an increasing investment in sensitivity in dim light environments. In the major clade containing all large-eyed stromboid families, species observed active during the day and the night had wider eye apertures relative to lens sizes than species observed active during the day only, thereby prioritising sensitivity over resolution. Species with no consistent diel activity pattern also had smaller body sizes than exclusively day-active species, which may suggest that smaller animals are more vulnerable to shell-crushing predators, and avoid the higher predation pressure experienced by animals active during the day. Within the same major clade, ancestral state reconstruction suggests that absolute eye size increased above 1mm twice. The unresolved position of Varicospira, however, weakens this hypothesis and further work with additional markers is needed to confirm this result.

Landscape use by prey: Bottom‐up regulation prevails under reduced predation risk

AbstractResource specialist herbivores may suppress antipredator strategies to access scarcely available key resources, while proactive antipredator behaviors should be favored by generalists or when resources are abundant. We quantified the relative effects of predation‐ (top‐down) and resource‐driven (bottom‐up) constraints on spatiotemporal patterns of landscape use by a prey community in a dynamic system under low predator abundance, and investigated how prey manage the risk posed by predators with different hunting strategies. We fitted Royle–Nichols co‐abundance models to camera‐trapping data collected between 2017 and 2019 in Bicuar National Park (Angola), to assess spatial association/segregation across predator–prey dyads, while accounting for the effects of water and food availability during dry and wet seasons. We further estimated pairwise seasonal differences in diel activity overlap between predator and prey. We failed to detect spatiotemporal proactive antipredator responses either toward the cursorial or ambush predator. The community‐wide predator–prey association patterns we found support that predation pressure is insufficient to displace prey from their preferred habitats or to adjust their endogenous clock, and support predominantly bottom‐up regulated behaviors. We suggest that, in landscapes where predator density is low, limited perception of risk may prevent the employment of proactive antipredator behavior.

Vertical and diel niches modulate thermal selection by rainforest frogs.

Thermoregulatory behaviour determines an organism's body temperature and therefore its physiological condition, and may differ for organisms situated across climate gradients. Species' preferred or selected temperatures may be higher in warmer locations-referred to as coadaptation-or lower in warmer temperatures-countergradient variation. Here, we tested if rainforest amphibians exhibited coadaptation or countergradient thermal selection across an underappreciated spatial climate gradient (vertical height from forest floor to canopy) and separating diel activity (diurnal versus nocturnal behaviour). We captured 2534 amphibians over 216 ground-to-canopy surveys, and conducted 282 thermal selection assays for 37 species while pairing microclimate measurements and mechanistic model predictions to understand vertical and daily thermal variation in the field. Amphibians exhibited countergradient thermal selection: species occupying cool nocturnal conditions in canopies selected warmer temperatures than species occupying hot diurnal conditions at the forest floor. Furthermore, amphibians selected warmer temperatures than the average conditions that they were exposed to when active, and this divergence was especially high for nocturnal arboreal species (8.68°C). This suggests that rainforest amphibians dramatically underfill the warm end of their thermal niches, a trend across local thermal gradients that reflects recent findings across elevational and latitudinal gradients. We show that considering multidimensional climate gradients is important to evaluate thermoregulatory behaviour, and its evolutionary underpinnings, for understanding species' niches and community assembly.

Circadian fruit phenology: An overlooked crucial aspect of plant‐frugivore interactions

Abstract The intrinsic ability of plants to face environmental diel changes is paramount for flowering and interactions with pollinators and herbivores. Surprisingly, despite the commendable research efforts on the ecology and evolution of fruit‐frugivore interactions, very little is known about how fruit ripening and dropping vary throughout 24‐h cycle. Even less is known about the potential consequences of circadian fruit phenology on plant interactions with mutualistic and antagonistic frugivores. We illustrate for the first time how the circadian pattern of fleshy fruit dropping and its matching/mismatching with the diel activity of functionally diverse frugivores (fruit/seed predators, seed dispersers, pulp feeders) can drive the outcome of complex multispecies plant‐frugivore interactions. To that end, we used camera trapping to quantify the circadian fruit dropping of a mammal‐dispersed tree, Pyrus bourgaeana, and the diel activity patterns of its functionally diverse vertebrate frugivores during two fruiting seasons in two tree populations of Mediterranean Spain. Using a large data set (20,878 frugivore visits and 701 fruit‐dropping records), we evaluate the adaptive hypothesis that the circadian pattern of fruit dropping will match the diel activity of seed dispersers rather than that of fruit/seed predators. Fruit dropping during daytime doubled that at night‐time, being considerably consistent across and within seasons, study sites and individual trees. Specifically, overlaps between circadian patterns of fruit dropping across and within seasons (0.83 and 0.84 ± 0.02, respectively), study sites (0.95) and individual trees (0.68 ± 0.01) were always high. Whereas seed dispersers (mammalian carnivores) were mostly nocturnal, the most frequent fruit/seed predators (cervids) were mostly diurnal. Consequently, and contrary to our expectations, circadian fruit dropping was more aligned with the diel activity of overabundant fruit/seed predators than with that of carnivore seed dispersers. Our study illustrates how quantifying the circadian patterns of fruit dropping, the diel activity of functionally diverse frugivores, and the matching/mismatching between both patterns can contribute to a better understanding of multispecies plant‐frugivore interactions. Circadian fruiting phenology is an overlooked key attribute for most tropical and temperate fruiting plants, which patterns, mechanisms and outcomes must be fully investigated. Read the free Plain Language Summary for this article on the Journal blog.

Seasonal and diel patterns in Black Sea harbour porpoise acoustic activity in 2020-2022.

The Black Sea is a semi-enclosed inland sea with an unevenly distributed extensive coastal shelf area and anoxic deep waters. It is inhabited by common and bottlenose dolphins, as well as harbour porpoises, all represented by local subspecies. Between September 2020 and October 2022, 19 F-PODs deployed by research teams from Bulgaria, Georgia, Romania, Türkiye and Ukraine collected data on acoustic activity of Black Sea harbour porpoises. Strong seasonal and diel patterns were found, which varied in three regions. In the south-eastern part of the Black Sea, harbour porpoise acoustic activity was higher from January to May, with a peak in April. This pattern agrees with the seasonal anchovy migration from the winter spawning grounds in warmer waters in the south-eastern region to feeding grounds on the productive shallow north-west shelf. The diel pattern showed strong nocturnal acoustic activity, which is consistent with anchovy vertical migration. Porpoises on the western side of the Black Sea exhibited a bimodal seasonal pattern in acoustic activity, with a larger peak in April and a smaller one in October. Diel activity was primarily nocturnal. On the north-west shelf, harbour porpoise acoustic activity was mostly recorded during the warm period from April to October. The diel pattern showed activity mainly during daylight with two peaks: a smaller one approximately at dawn and a larger one at dusk. This pattern is similar to the vertical migrations of sprat. Overall, the results of the study were consistent with the prey being an important driver of seasonal and diel dynamics of harbour porpoise acoustic activity.

Global primary predictors of extinction risk in primates.

Identifying the main predictors of species' extinction risk while accounting for the effects of spatial and phylogenetic structures in the data is key to preventing species loss in tropical forests through adequate conservation practices. We recorded 22 705 precise geographical locations of primate occurrence across four major geographic realms (Neotropics, mainland Africa, Madagascar and Asia) to assess predictors of threat status using a novel Bayesian spatio-phylogenetic approach. We estimated the relative contributions of fixed factors (forest amount, body mass, home range, diel activity, locomotion, evolutionary distinctiveness and climatic instability) and random factors (space and phylogeny) to primate extinction risk. Precipitation instability increased the extinction risk in the Neotropics but decreased it in mainland Africa and Madagascar. Forest amount was negatively associated with extinction risk in all realms except Madagascar. Body mass increased the extinction risk in the Neotropics and Madagascar, whereas home range increased the extinction risk in mainland Africa and decreased it in Asia. Evolutionary distinctiveness negatively influenced extinction risk only in mainland Africa. Our findings highlight the importance of climate change mitigation and forest protection strategies. Increasing the protection of large primates and reducing hunting are also essential.

Identifying insect predators using camera traps reveal unexpected predator communities in oilseed rape fields

Cameras are common tools for ecologists studying species abundance, richness, and interactions. They are mainly used to study large animals but are increasingly used to study invertebrates. Camera traps could be a powerful tool to identify and quantify the natural enemies, such as predators, of specific agricultural pests. This knowledge can then be applied to adapt farming practices to favour the predators identified and improve conservation biocontrol.Here, cameras were used to identify predators of two insect pests of oilseed rape (Brassica napus): the pollen beetle (Brassicogethes aeneus) and the brassica pod midge (Dasineura brassicae). These insects are spring pests of oilseed rape and are both susceptible to predation by ground-dwelling arthropods during their development cycle. The objectives of this study were to 1) identify the predators of the pest species, and 2) investigate the hypothesis that the diel activity periods of the predators match the timing of pest larval presence on the ground. Field observations were conducted in two locations over two consecutive years in the UK.In contrast to previous reports, our data collected using cameras showed that larval stages of predatory beetles are responsible for most of the predation events and that adult stages were not frequently observed feeding on the prey. Our data also showed that the traditional method, using pitfall traps, failed to detect the presence of large numbers of beetle larvae. Interestingly, the pests dropped to the ground and were therefore most susceptible to predation at the time when predators were most active.These results give new insight on the predators of the two most important spring pests of oilseed rape in Europe. This knowledge can be used by practitioners to develop framing practices targeted on enhancing the abundance of the larval stages of these beneficial arthropods to better control the pests in a more sustainable way.

Divergent seed dispersal outcomes: Interactions between seed, disperser, and forest traits.

Animals disperse seeds in various ways that affect seed deposition sites and seed survival, ultimately shaping plant species distribution, community composition, and ecosystem structure. Some animal species can disperse seeds through multiple pathways (e.g., defecation, regurgitation, epizoochory), each likely producing distinct seed dispersal outcomes. We studied how seed traits (size and toughness) interact with disperser species to influence seed dispersal pathway and how this ultimately shapes the proportion of seeds deposited in various habitat types. We focused on three frugivorous species of duikers (African forest antelopes) in the Dja Faunal Reserve, a tropical rainforest in southern Cameroon. Duikers can both defecate and regurgitate seeds, the latter predominantly occurring during rumination at their bedding sites (or "nests"). We located duiker nests and dungs along 18 linear 1-km-transects to assess: (1) how seed traits affect the likelihood of dispersal via defecation versus regurgitation, (2) if defecated versus regurgitated seeds are deposited at different rates in different forest types (assessed by indigenous Baka), microhabitats, and forest structural attributes (measured by drone lidar), and (3) if these differ between three duiker species that vary in size and diel activity patterns. We found that duikers predominantly defecated small seeds (<3 mm length) and regurgitated larger and tougher seeds (>10 mm length), the latter including 25 different plant species. The three duiker species varied in their nesting habits, with nocturnal bay duikers (Cephalophus dorsalis) nesting in dense understory vegetation at proportions 3-4 times higher than Peter's and yellow-backed duikers (Cephalophus callipygus and Cephalophus silvicultor). As a result, bay duikers deposited larger regurgitated seeds at a higher rate in habitats with denser understory where lianas and palms predominate and near fallen trees. This directed regurgitation seed deposition likely plays an important and unique role in forest succession and structure. This study highlights the importance of ungulate seed dispersal by regurgitation, a vastly understudied process that could impact many ecosystems given the prevalence of ruminating ungulates worldwide.

Ecological Adjustments and Behavioural Patterns of the European Badger in North-Western Italy

The European badger is a highly adaptable species, inhabiting a range of environments across Europe, from woodlands to urban areas, with its behaviour influenced by environmental conditions and human activities. This study examines the badger feeding habits, patterns of diel activity, and sett site choice in north-western Italy, assessing how landscape composition affects these behaviours. We conducted our research across seven study areas in northern Italy from December 2020 to November 2022, utilising camera trapping, faeces analysis, and sett surveys. Our findings revealed significant dietary variation, with earthworms being the primary food source in natural landscapes, while fleshy fruits being consumed especially in mixed and heavily modified landscapes, up to constitute the staple of the diet in one agricultural area. Badgers were found to be nocturnal, primarily active between sunset and sunrise. Setts varied considerably in structure and location, with a preference for natural grounds over human-made structures; key factors influencing sett site choice included slope, exposure, and vegetation cover. This study underscores the European badger’s remarkable adaptability, illustrating how its diet, activity patterns, and sett site preferences are shaped by a complex interplay of factors, allowing the species to thrive in both pristine and modified environments across northern Italy.

Fisher activity patterns show potential for behavioral adaptations to human modified landscapes

Animals alter their diel activity in response to physiological constraints and ecological conditions. Fisher (Pekania pennanti) activity is known to vary through the diel cycle and change in response to cold stress and generally through both the climatic and biological seasons. However, less is known whether thermoregulatory effects impact fisher activity in milder climates and in areas of high human disturbance. We focused on two distinct research objectives to understand the 1) physiological constraints, and 2) ecological components of fisher activity in a highly disturbed landscape with a relatively mild climate. We used accelerometer data from 34 individual live-captured fisher in Rhode Island, USA from 2021 to 2023. We found that fisher activity patterns were primarily driven by diel cycle with higher activity levels at night than during the day. We did not observe any physiological influence of ambient temperature on fisher activity; daily minimum temperatures did not constrain fisher activity in the colder months, nor did daily maximum temperatures in warmer months. We did find that female activity levels differed by breeding status with non-pregnant females having higher activity levels than pregnant females. Considering ecological components, we found fisher decreased activity levels in higher road density areas during warmer months that coincide with higher traffic volumes. For fisher living in areas with lower road densities, we saw higher activity in the breeding season and summer than in winter. In contrast, fisher living in areas with high road densities had lower activity in the breeding season and summer than in winter. We conclude that fisher largely do not shift their activity to mitigate thermoregulatory costs in areas where temperatures do not reach extremes for extended periods of time. However, our findings suggest that behavioral shifts in activity are impacted by human disturbance and fisher minimize activity in risky areas.

Camera Traps Reveal Variation in Diel Activity Patterns among Different Sex-Age Classes in Brown Bears in Hokkaido

Camera Traps Reveal Variation in Diel Activity Patterns among Different Sex-Age Classes in Brown Bears in Hokkaido

Thermal constraints and gender-related differences in the activity patterns of the monomorphic rodent Clyomys laticeps

Abstract The daily activity pattern of animals can be classified as diurnal, nocturnal, crepuscular, and cathemeral reflecting strategic decisions to maximize mating and foraging while reducing predation risks and thermal constraints. Among monomorphic mammals, competition for resources and gender-related differences in physiology and reproductive strategies may translate into different activity patterns of males and females. Therefore, to understand the daily activity pattern both aboveground and belowground of the semifossorial rodent Clyomys laticeps, we tested the following hypotheses: (1) males and females differ in their diel activity patterns; (2) males are active for longer periods than females due to a promiscuous mating system and female site fidelity; and (3) higher maximum temperatures restrain C. laticeps activity. The study was carried out in the Serra de Caldas Novas State Park (Goiás, Brazil) in the Cerrado biome. The activity of C. laticeps was recorded using the telemetry technique over 5 days and nights (twice in each season, rainy and dry, between 2019 and 2021). Clyomys laticeps activity was bimodal, with 2 peaks around dawn and dusk, resembling a crepuscular pattern. Temporal segregation in male and female activity patterns was restricted to the dry season, when female activity was more diurnal than males who were mainly nocturnal. Intersexual competition for resources or male-avoidance behavior by females during the dry food scarcity season could contribute to this pattern, although it may also be explained by gender-related differences in thermal tolerances. Overall, males were active for longer periods than females, probably as a strategy to increase mating opportunities among the former and site fidelity in the latter. Finally, temperature imposed major constraints on C. laticeps activities who preferred milder temperatures and avoided being active in temperatures above their thermoneutral zone.

Co‐occurrence in snake and lizard sister species is unrelated to major ecomorphological traits

AbstractEnvironmental factors and interspecific interactions, such as competition and facilitation, can shape species' geographic ranges. Here, we tested the relationship between geographic range overlap of squamate sister species, and their divergence in body size, diel activity, and microhabitat use. Competition theory predicts that sister species with similar traits will overlap less geographically than sister pairs with dissimilar traits. However, similar distributions may present similar selective pressures and favour similar adaptations, such that habitat filtering may result in species with more similar traits in sympatry. Across 1434 sister species contrasts, we found little relationship between range overlap and niche divergence. In some models, the divergence in body size and microhabitat use marginally increased with sympatry, while in other models, sympatric sisters had similar activity times. However, the low R‐squared values of almost all these models lend only weak support to predictions from competition or habitat filtering theories. Sympatric sister species within the same biome showed more similar activity times than expected, lending some support to habitat filtering. Niche divergence in allopatry or sympatry, as calculated using a multi‐trait dissimilarity index, did not show a phylogenetic signal, and niches of sister species from different squamate clades did not deviate significantly from the null expectation. Overall, niche divergence or convergence, across the axes we explored, is not a prerequisite for regional species co‐occurrence. We suggest here that the lack of consistent support for either limiting similarity or habitat filtering may reflect that both these forces act as transient phenomena. More fine‐grained analyses, in space and time, would be needed to detect their fingerprints. Thus, coexistence in the face of competition can arise due to various evolutionary and biogeographic mechanisms, acting concurrently or asynchronously.

Is the diel cycle of routine metabolic rate in mummichog (Fundulus heteroclitus) affected by near-infrared lighting used for visualizing behavior of fishes at night?

The metabolic rate of a freely moving fish (routine metabolic rate) is tightly coupled with volitional movement (spontaneous activity), both of which commonly show strong daily cycles linked to the species-specific diel activity pattern. Mummichog (Fundulus heteroclitus), an important estuarine fish in the north western Atlantic Ocean, are historically reported as diurnal (i.e., more active during daylight). Our recent laboratory studies on a Bay of Fundy population, however, showed a free-running (i.e., similarly active daytime and night-time) or even nocturnal (i.e., more active at night-time) diel activity pattern. In the laboratory, near-infrared (NIR) illumination is commonly used with a NIR-sensitive camera to visualize fish activity across the light-dark periods of the day. Because NIR light is close to the visible light spectrum and certain fishes show sensitivity to NIR, the use of NIR with mummichog possibly could disturb the animals and obscure the identification of their true diel activity pattern. We aimed to determine if NIR illumination (940 nm wavelength) influences the diel activity pattern of mummichog. We used measurements of routine metabolic rate (oxygen consumption rate, MO2) as a proxy for activity, as evaluating the effect of NIR requires treatments where NIR lights are off, which precludes visualization and direct assessment of fish activity at night-time. We measured routine MO2 of mummichogs over 6 days, exposed to either NIR off-on-off (2 days for each off or on period) or the opposite sequence of NIR on-off-on (to control for time-dependent effects). NIR lights did not influence the diel cycle of routine MO2, and activity by proxy, in mummichog. Thus, NIR illumination is a suitable method to visualize mummichog during light-dark diel cycles. Routine MO2, and presumably activity, was similar or higher during night-time periods compared to daytime periods, confirming a free-running or nocturnal activity pattern for at least certain populations of mummichog.

Continual Day–Night eDNA Detectability Amidst Diel Reef Species Fluctuations on Diver Transects

ABSTRACTRecent research into the spatiotemporal dynamics of eDNA in marine environments indicates that eDNA signals are highly localized and may dissipate beyond detection levels within a few hours of production. This affects whether single‐timepoint eDNA sampling, which generally occurs during daylight hours, or cyclic (day/night) interval eDNA sampling is necessary to detect both diurnal and nocturnal marine species. Our study investigated short‐term variability in eDNA derived from fishes and macroinvertebrates across three temperate reef sites in eastern Tasmania, Australia. Simultaneous eDNA and underwater visual census (UVC) diver transect surveys were conducted every 6 h over a 24‐h period to investigate whether eDNA was able to detect marine species outside of their UVC‐observed diel activity. We report that single‐timepoint eDNA sampling can detect both diurnal and nocturnal species on temperate reefscapes. A lack of eDNA compositional turnover between day and night suggests that eDNA persists beyond 12 h and/or is continuously produced by both diurnal and nocturnal reef taxa, irrespective of diel behavioral changes observed by UVC. Given high eDNA sample variability, however, we recommend a high replication level (&gt; 10 × 1 L samples) to produce robust site community composition profiles. This study builds on emerging literature on short‐term variability in eDNA, assisting in the design of future eDNA studies at sites with pronounced variation in faunal activity between day and night.

Mesopredators have differing influences on prey habitat use and diel activity in a multipredator landscape

AbstractResource distribution, habitat structure, and predators greatly influence spatial and temporal landscape use by prey species. The “risky places” hypothesis establishes prey will proactively respond to predators' presence based on habitat cues, whereas the “risky times” hypothesis predicts prey will reactively respond by increasing vigilance in the presence of predators regardless of habitat cues. We fit a multiscale, Bayesian species interaction occupancy model with detection/non‐detection data to evaluate black‐tailed jackrabbit (Lepus californicus) and eastern cottontail rabbit (Sylvilagus floridanus) habitat use in the presence and absence of coyotes (Canis latrans), American badgers (Taxidea taxus), and swift foxes (Vulpes velox). We also evaluated how species‐specific predator presence modified temporal activity patterns of prey. Jackrabbits decreased habitat use in areas with greater forage and opted to use areas with greater visibility when coyotes or swift foxes were present. However, cottontails used habitat in open areas with greater visibility when American badgers were present and all other predators absent, suggesting dissimilar habitat‐use patterns dictated by predator‐specific risks. Both lagomorph species are nocturnal with segregated peaks of activity compared with predators, suggesting fine‐scale temporal use partitioning. Our results provide insights into predator–prey dynamics across heterogenous landscapes in a multi‐predator system.

Detection rates and diel activity patterns of four understudied felids from Borneo.

Carnivore guilds are charismatic and have vital and irreplaceable roles in their native ecosystems, yet many of these species are threatened and remain understudied. Borneo is a biodiversity hotspot that hosts a rich diversity of endemic wildlife but is threatened by deforestation and habitat loss. Using cameras placed by the Smithsonian Institution in Sabah, Borneo, we assessed the detection rates and diel activity patterns of the native felid species. Across 51 camera trap sites between 2016 and 2019, felids were detected 55 times across a combined 9958 trap nights, including 20 independent detection events for Sunda leopard cats, 15 for Sunda clouded leopards, 12 for Borneo bay cats, and 5 for marbled cats, with no detections of flat-headed cats. Collectively, this demonstrates the challenge of sampling cryptic species that have declined due to habitat loss and conflict with humans. Despite this, we show that Borneo bay cats and marbled cats exhibited different diel activity patterns than Sunda cloud leopards, suggesting the smaller species use temporal displacement to avoid competition and predation. Sunda leopard cats exhibited broadly similar activity patterns to Sunda clouded leopard, potentially because the two species typically occupy different dietary and habitat niches. These results demonstrate the importance of devoting future research towards monitoring these species and understanding the mechanisms by which they co-exist.

A Mathematical Model of Diel Activity and Long Time Survival in Phototrophic Mixed-Species Subaerial Biofilms

Subaerial biofilms (SAB) are intricate microbial communities living on terrestrial surfaces, of interest in a variety of contexts including cultural heritage preservation, microbial ecology, biogeochemical cycling, and biotechnology. Here we propose a mathematical model aimed at better understanding the interplay between cyanobacteria and heterotrophic bacteria, common microbial SAB constituents, and their mutual dependence on local environmental conditions. SABs are modeled as thin mixed biofilm-liquid water layers sitting on stone. A system of ordinary differential equations regulates the dynamics of key SAB components: cyanobacteria, heterotrophs, polysaccharides and decayed biomass, as well as cellular levels of organic carbon, nitrogen and energy. These components are interconnected through a network of energetically dominant metabolic pathways, modeled with limitation terms reflecting the impact of biotic and abiotic factors. Daily cylces of temperature, humidity, and light intensity are considered as input model variables that regulate microbial activity by influencing water availability and metabolic kinetics. Relevant physico-chemical processes, including pH regulation, further contribute to a description of the SAB ecology. Numerical simulations explore the dynamics of SABs in a real-world context, revealing distinct daily activity periods shaped by water activity and light availability, as well as longer time scale survivability conditions. Results also suggest that heterotrophs could play a substantial role in decomposing non-volatile carbon compounds and regulating pH, thus influencing the overall composition and stability of the biofilm.

First insights into the vertical habitat use of young porbeagles in the north-western Atlantic with implications for bycatch reduction strategies

Context For threatened marine species, data on their vertical habitat use patterns can reveal risk of interactions with fishing gear and can inform bycatch avoidance strategies. Such data are lacking for young porbeagles (Lamna nasus), which are captured as bycatch in north-western Atlantic fisheries. Aims We aimed to examine temporal patterns in diving and characterise vertical habitat use of young porbeagles during summer and autumn. Methods We used data from short-term (28-day), high-resolution (5-min interval) pop-off satellite tags attached to 14 young (young-of-the-year and 1-year-old) porbeagles to model depth use. Key results Occupied depths ranged from the sea surface to 679 m, with ambient water temperatures of −0.2 to 26°C. Diel period and season were factors related to depth use. Conclusions Sharks exhibited a diel activity pattern characterised by more extensive use of the water column during the day while remaining primarily at the surface at night. Depth use differed between seasons, with summer characterised by greater affinity for surface waters (0–10 m) compared to autumn. Implications Young porbeagles are at risk of interaction with active fisheries on the continental shelf, but interactions may be reduced by setting gear deeper at night or during summer.