Determining Species Composition Research Articles

Diversity and Taxonomic Classification of Epiphytes in the Federal Capital Territory, Nigeria

Epiphytes exist in the Federal Capital Territory communities but there is little or no information on their diversity and taxonomy. However, Federal Capital Territory is a treasure house of ethnic communities and some valuable plant species. One major gap across the Federal Capital Territory, is lack of formal record on the diversity and taxonomic classification of the epiphytes. The objective of this study is to collect and identify epiphytes present in the Federal capital Territory, determine species composition and abundance, and further identify the various plants used as hosts by the epiphytes. The greatness of epiphytes has enabled them to exploit a wide range of habitats including tropical and temperate woodlands, plantations and mangroves. In tropical canopies, epiphytes are remarkably diverse and show asynchronous phonological patterns at the community level. A reconnaissance survey of the study on diversity and taxonomic classification of epiphytes was carried out from November to December, 2021 in Abaji, Abuja Municipal, Bwari, Gwagwalada, Kuje and Kwali area councils of the Federal Capital Territory (FCT), Nigeria. Eighteen study points were randomly selected from the administrative town and two settlements from each of the area council. The study sites were selected considering the dry riparian nature of the region, altitudinal ranges, notable presence of epiphytes diversity and recommendation from respondents. Data was collected by administering semi-structured questionnaires to 90 respondents for a single face-face interview. Epiphytic plants collected from the field were identified. Those that could not be identified were taken to the Biological Sciences Department, University of Abuja, for identification and documentation. The epiphytes were classified into eight (8) taxonomic groups namely; Polypodiophyta, Tracheophyta, Basidiomycota, Magnoliophyta, Ascomycota, Bryophyta, Marchantiophyta and Anthophyta while four (4) evolutionary taxonomic groups were identified. Based on their mode of life, some epiphytes were classified as Typical Epiphytes while others were Semi Epiphytes and Occasional Epiphytes. The study shows that different epiphytic plants occur in the Federal Capital Territory (FCT), Nigeria, and they belong to various taxonomic groups. Epiphytes in the Federal Capital Territory, and their Taxonomic Groups, indicated that Nephrolepis bisserata (Sw.) Schott, Platycerium stemaria (P.Beauv.) Desv., Ficus benghalensis L., Ficus vogelii Miq., Elaeis guinensis Jacq., Ageratum conyzoides (L.) L., Ficus leprieurii (Miquel), Ficus lutea Vahl, Ficus thonningi Blume, Ficus exasperate Vahl., Ficus platyphylla Delile, Polyhandra longiflora L., Digitaria ciliaris (Retz.) Koeler, Lycoperdon spadiceus Pers., Auricularia polytricha (Mont.) Sacc., Viburnum tinus L., Plagiothecium undulatum (Hedw. Schimp., Frullania dilatata (L.) Dumort., and Ficus aurea Nutt. occured in all the area councils of the FCT while Fomitopsis sp P.Karst., Entodon sp MÜll. Hal. and Funaria sp Hedw. were seen in Abaji, Bwari, Gwagwalada, Kuje and Kwali area councils. Nephrolepis undulata (Afzel. Ex Sw.) J.Sm. occurred in Bwari, Kuje and Municipal area councils. Coprinus lagopus P.Karst., Daldinia concentrica (Bolton) Cesati and de Notaris, Entodontopsis nitens (Mitt.) W.R.Buck and Ireland, Syntrichia laevipila (Brid.) K.F.Schultz. occurred in Bwari, Gwagwalada, Kuje, and Municipal area councils. Having studied the diversity and classification of epiphytes of the Federal Capital Territory, it is recommended that further research analysis be carried on the phytochemical constituents of some of these epiphytes to determine their major classes of compounds.

Authentication of seafood species on the ASFIS list (FAO) by in-silico evaluation of primers for metabarcoding

Given the remarkable biodiversity among the seafood species entering the food supply chain, authentication is a crucial component in ensuring transparent trade. DNA metabarcoding stands out as the leading methodology for determining species composition within complex food matrices. Nevertheless, the selection of primer pairs is critical, as it may introduce biases into species identification. In this investigation, we evaluated previously described primers for their in-silico efficacy in identifying both edible marine species on the ASFIS (FAO) list and the main terrestrial animal species frequently incorporated as ingredients in processed seafood products. Selected primers covered the Cytochrome c Oxidase subunit I (COI), the Cytochrome b (cytb), the 16S rRNA (16S) and the 12S rRNA (12S) mitochondrial regions. Results showed that, out of 53 pairs analysed, one primer pair targeting the COI region obtained the best performance in terms of taxonomic coverage for both ASFIS and terrestrial species. Notably, each primer pair showed a unique taxonomic profile, suggesting their potential for addressing various seafood authentication issues as the detection of novel food ingredients (e.g., jellyfish, red algae, insects) or endangered species. Overall, these outcomes deliver valuable insights for selecting metabarcoding primers to improve the traceability of seafood products and contribute to the development of an innovative Food Safety Management System.

Thermal tolerance as a driver of reef fish community structure at the isolated tropical Mid-Atlantic Ridge Islands

Reef fish communities are shaped by historical and ecological factors, including abiotic and biotic mechanisms at different spatial scales, determining species composition, abundance and biomass. The oceanic islands in the Mid-Atlantic Ridge (St. Peter and St. Paul's Archipelago - SPSPA, Ascension, and St. Helena), exhibiting differences in community structure along a 14-degree latitudinal and a 10 °C thermal gradient. We investigate the influence of sea surface temperature, area, age, isolation and phosphate on reef fish community structures. Reef fish trophic structure varies significantly across the islands, with planktivores and herbivore-detritivores showing the highest abundances in SPSPA and Ascension, while less abundant in St. Helena, aligning with the thermal gradient. Variations in reef fish community structures were predominantly influenced by thermal regimes, corroborating the expansion of species' thermal niche breadth at higher latitudes and lower temperatures. This study highlights that in addition to biogeographic factors, temperature is pivotal on shaping oceanic island reef fish community structure.

Stochastic process drives the dissimilarity in biodiversity patterns between Pinus kwangtungensis coniferous forest and evergreen deciduous broad-leaved mixed forest in karst area.

Pinus kwangtungensis is an endangered evergreen conifer tree species, and its in situ conservation has been considered one of the most critical issues. However, relative protection is limited by the lack of understanding of its community structure and underlying assembly processes. To study how the species diversity and assembly processes of Pinus kwangtungensis coniferous forest (CF) differed with regional climax community, this study established a series forest dynamic plots both in CF and evergreen deciduous broadleaved mixed forest (EDBM). By performing comparison analysis and PER-SIMPER approaches, we quantified the differences in species diversity and community assembly rules. The results showed that the species α-diversity of CF differed greatly from the EDBM both in species richness and evenness. In addition, the stochastic process acted a more important role in determining species composition, indicating the uncertainty in presence of species. The soil phosphorus and changeable calcium content were the main factors driving the differences in biodiversity, which the importance of soil nutrient factors in driving species composition. Our study highlighted that we should consider the community structure and ecological process when conducting conservation of Pinus kwangtungensis.

Photonic sensors reflect variation in insect abundance and diversity across habitats

To mitigate ongoing insect biodiversity declines, there is a need for efficient yet accurate monitoring methods. The use of traditional catch-based survey methods is constrained both by costs and need for expertise for manual taxonomic identification. Emerging methods, such as eDNA and robotic sorting, have the potential to reduce workload but still require resource-intensive sample collection in the field. Recently, remote sensing methods such as photonic sensors have shown promise for recording large numbers of insect observations. However, accurately determining species composition in collected data remains a challenge.In this study, we investigated the potential of photonic sensors for quantifying species richness of flying insects in the field and at five sites and compared the results with estimates based on conventional Malaise traps. Firstly, we evaluated two unsupervised clustering methods using a library of measured insect signals from 42 known species. Secondly, we correlated estimated number of clusters in data recorded at five sites with species richness assessment of catches from Malaise traps. This study is based on 84,770 library- and 238,584 field individual insect recordings. Our results demonstrate that both clustering methods perform well and reflect estimates obtained by Malaise traps, indicating the potential of automated insect biodiversity monitoring. This offers the possibility of more efficient but still accurate methods for studying insect biodiversity with broader temporal and spatial coverage.

Fishery and conservation implications of molecular characterization and traceability of ceviche samples from Pacific Panama

Genetic analysis of 111 samples from ceviche cocktails and fish fillets used for ceviche, obtained from fish markets and processing plants in the Pacific zone of Panama were conducted to determine species composition, trace origin (native, nonnative or imported frozen species) and CITES species status. A total of 21 species were detected (20 fishes and one invertebrate): Coryphaena hippurus (dolphin fish), Pangasianodon hypophthalmus (basa), Trachinotus falcatus (pompano), Cyclopsetta querna (toothed flounder), Atheresthes stomias (arrow-tooth flounder), Lobotes pacificus (Pacific tripletail), Bagre panamensis (Chihuil sea-catfish), B. bagre (Coco sea-catfish), Ariopsis seemanni (Tete sea-catfish), Aspistor luniscutis (yellow sea-catfish), Centropomus viridis (white snook), C. undecimalis (Union snook), Sphyrae naensis (Mexican barracuda), Oreochromis niloticus (Nile tilapia), O. mossambicus (Mozambique tilapia), Cynoscion praedatorius (Boccone weakfish), Protonibea diacanthus (blackspotted croaker), Gadus chalcogrammus (Alaska pollock), Sphyrna lewini (scalloped hammerhead shark), Makaira nigricans (blue marlin) and Dosidicus gigas (giant Humbolt squid). Native species found in ceviche samples were reduced in numbers compared with imported and cultivated ones. Thus, the most common detected fish species was basa, followed by the Nile tilapia and the dolphin fish. This is a positive result in terms of sustainability of local fisheries, since basa is imported as frozen fish meat from Asia. The same applies for Nile tilapia, a cultivated freshwater species not captured from local fisheries. For the dolphin fish, despite being common and exploited in Pacific waters, previous studies suggest its fishery is sustainable in Panama waters. In terms of conservation status, one species cataloged by IUCN as vulnerable (VU), the blue marlin (M. nigricans) and one as critically endangered (CR), the scalloped hammerhead shark (S. lewini) were detected. Sphyrae lewini is also catalog as CITES appendix II. The giant Humbolt squid (D. gigas), classified by IUCN as data deficient (DD), was the only invertebrate detected in samples obtained from a ceviche processing plant. Two sets of primers and dual labeled probes were designed for qPCR eDNA detection of the only CITES species, S. lewini. These represent the first qPCR markers for eDNA detection of S. lewini. Results from this project promote the sustainable use of fishery resources and might provide ceviche producers with a certificate from MarViva Foundation certifying that their ceviche is free of sharks or species threatened/protected by law, giving added value to their product. Molecular detection and molecular traceability are sensitive and species specific, what makes of this tool a reliable method to combat IUU (illegal, unreported and undocumented) fishing.

Effects of nursery production methods on fungal community diversity within soil and roots of Abies alba Mill.

The aim of this study was to elucidate how different nursery production methods influence the composition of and relationship between soil and root community levels of Abies alba. In the Międzylesie Forest District, we quantified the responses of samples of both community-level fine roots and surrounding soil to environmental changes evoked by various seedling production methods. Fungi levels were identified based on their ITS 1 region and 5.8 S rDNA component. Analysis was conducted using Illumina SBS technology, and the obtained sequences were compared with reference samples deposited in the UNITE. Chemical analysis of the soil was also performed. Different nursery production methods resulted in a strong decoupling in the responses of fungal community levels between soil and roots. Changes in growth conditions imposed by production methods were significant in determining species composition. We found differences in fungal communities among functional groups of samples. In the soil, the dominant species of mycorrhizal fungi were Tylospora asterophora, Amanita rubescens, and Russula ionochlora. Mycorrhizal fungi in roots included Tuber anniae, Thelephoraceae sp., and Acephala applanata. Specific soil substrate conditions significantly influenced fungal community composition, leading to an increase in abundance of mycorrhizal fungi, specifically T. anniae.

Symbiofauna of the Yakut breed of horses depending on breeding conditions

Purpose: Study of the fauna of endobiontic infusoria according to the types of the Yakut breed of herd horses.Materials and methods. There were studied infusorian fauna of the intestines of the Yansky type horses of the Yakut breed from the Abyisky region (Arctic zone) and horses of the indigenous type from the Amginsky region and the suburbs of Yakutsk (the central zone). The material was collected during the mass slaughter of horses in November-December 2022, directly from the large intestine. The time interval after the slaughter of the horse before sampling was no more than 20-25 minutes. Samples were fixed with 10% formalin solution. The identification of species was carried out according to the guides of Strelkov A. A., 1939 [1] and Kornilova O. A. [2, 3]. Comparison of the species composition of endobiont infusoria of the cattle fauna of the studied breeds was carried out according to the Jacquard-Malyshev similarity coefficient (Kj-m) and the Czekanowski-Sjørensen fauna commonality index (Ics).Results. There has been determined species composition of endobiont infusoria of the Yansky and indigenous type of the Yakut herd horse breed, bred in areas that differ in geographical location in the Arctic and central zones of Yakutia. A total of 15 species of infusoria have been identified. The percentage of occurrence by species ranged from 2,63 % to 13,2 %. The most frequently encountered species were Cycloposthium edentatum, Holophryoides macrotricha, Bundleia elongata, while Cycloposthium dentiferum, Spirodinium confusum, Cycloposthium ponomarevi and Allantosoma intestinale were rare.

Development Dynamics of Punica Diseases in Absheron District of Azerbaijan

The article describes the dynamics of the development of diseases of Punica in Absheron district. According to the methodology, visual inspection (5-25) of leaves, branches and fruits was carried out on 4 sides of the tree sample. Recorded samples of flower leaves, branches, stem bark and infected fruits were delivered to the laboratory; signs of the presence of pests and diseases: darkening, puncturing, spotting, drying, rotting, wilting, etc. Microscopic analyzes were carried out to determine species composition by recording characteristics. Using the method, the species composition of pomegranate mushroom seedlings was determined. Disease samples collected and delivered to the laboratory were analyzed according to the relevant methodological rules. A photograph of the pathogenic fungus spores was taken under a microscope. Under laboratory conditions in a thermostat, the development of ascospores of perithecia of the Sphaceloma punicae Bitanc. et Jenkins, which is a widespread disease of pomegranate, was partially controlled. When studying the spread of diseases affecting pomegranate plants in the region, route observations were carried out 3 times at 4-5 stations in the region at different stages of the growing season. At this time, visual observations were made of pomegranate bushes planted in different places (private courtyards and other enterprises, parks and roadsides).

Phylogenomics, phenotypic, and functional traits of five novel (Earth-derived) bacterial species isolated from the International Space Station and their prevalence in metagenomes

With the advent of long-term human habitation in space and on the moon, understanding how the built environment microbiome of space habitats differs from Earth habitats, and how microbes survive, proliferate and spread in space conditions, is becoming more important. The microbial tracking mission series has been monitoring the microbiome of the International Space Station (ISS) for almost a decade. During this mission series, six unique strains of Gram-stain-positive bacteria, including two spore-forming and three non-spore-forming species, were isolated from the environmental surfaces of the ISS. The analysis of their 16S rRNA gene sequences revealed > 99% similarities with previously described bacterial species. To further explore their phylogenetic affiliation, whole genome sequencing was undertaken. For all strains, the gyrB gene exhibited < 93% similarity with closely related species, which proved effective in categorizing these ISS strains as novel species. Average nucleotide identity and digital DNA–DNA hybridization values, when compared to any known bacterial species, were < 94% and <50% respectively for all species described here. Traditional biochemical tests, fatty acid profiling, polar lipid, and cell wall composition analyses were performed to generate phenotypic characterization of these ISS strains. A study of the shotgun metagenomic reads from the ISS samples, from which the novel species were isolated, showed that only 0.1% of the total reads mapped to the novel species, supporting the idea that these novel species are rare in the ISS environments. In-depth annotation of the genomes unveiled a variety of genes linked to amino acid and derivative synthesis, carbohydrate metabolism, cofactors, vitamins, prosthetic groups, pigments, and protein metabolism. Further analysis of these ISS-isolated organisms revealed that, on average, they contain 46 genes associated with virulence, disease, and defense. The main predicted functions of these genes are: conferring resistance to antibiotics and toxic compounds, and enabling invasion and intracellular resistance. After conducting antiSMASH analysis, it was found that there are roughly 16 cluster types across the six strains, including β-lactone and type III polyketide synthase (T3PKS) clusters. Based on these multi-faceted taxonomic methods, it was concluded that these six ISS strains represent five novel species, which we propose to name as follows: Arthrobacter burdickii IIF3SC-B10T (= NRRL B-65660T = DSM 115933T), Leifsonia virtsii F6_8S_P_1AT (= NRRL B-65661T = DSM 115931T), Leifsonia williamsii F6_8S_P_1BT (= NRRL B-65662T = DSM 115932T), Paenibacillus vandeheii F6_3S_P_1CT (= NRRL B-65663T = DSM 115940T), and Sporosarcina highlanderae F6_3S_P_2T (= NRRL B-65664T = DSM 115943T). Identifying and characterizing the genomes and phenotypes of novel microbes found in space habitats, like those explored in this study, is integral for expanding our genomic databases of space-relevant microbes. This approach offers the only reliable method to determine species composition, track microbial dispersion, and anticipate potential threats to human health from monitoring microbes on the surfaces and equipment within space habitats. By unraveling these microbial mysteries, we take a crucial step towards ensuring the safety and success of future space missions.

Spatial and Temporal Variation of Fish Assemblage Associated with Aquatic Macrophytes in Three Small Lagoons of the SOUTH-Eastern, Côte d’Ivoire

Aquatic plants play a crucial role in an aquatic ecosystem partly because these plant communities provide suitable habitats and food items to other aquatic organisms especially fish. The purpose of the present study was to examine spatial variation in fish assemblage structure associated with aquatic macrophytes in Ono, Kodjoboue and Hebe lagoons, three small lagoons of Côte d’Ivoire. Fish were monthly sampled from September 2014 to August 2016 using traps, gill nets, harpoons and hawks. The abiotic parameters namely temperature, transparency, pH, total dissolved solids, conductivity, dissolved oxygen, ammonium-nitrogen, nitrate, nitrite and phosphate were recorded for the characterization of the water mass in the lagoons. Significant variation in water parameters was observed among the sampling lagoons, except for nitrite and ammonium-nitrogen. However, no significant different was obtained between Kodjoboue and Hebe lagoons. A total of 42, 35 and 37 species were recorded respectively in Ono, Kodjoboue and Hebe lagoons, with Perciformes (22 species), Siluriformes (8 species) and Osteoglossiformes (7 species) being the most diverse Orders. Habitats with highly amounts of macrophyte cover provide the optimal environment for many fish and hence, increase the taxonomic richness, abundance, diversity and equitability. The multivariate analysis showed that temperature, dissolved oxygen, nitrate, phosphate, pH and ammonium-nitrogen and macrophyte were key environmental variables and played important roles in determining species composition of fish assemblages.

Drosophila Infestations of California Strawberries and Identification of Drosophila suzukii Using a TaqMan Assay

In contrast to most other Drosophila species that infest processing (overripe) strawberries, the spotted-wing drosophila (SWD) can also infest firm and ripe fruit intended for the fresh market. However, fresh fruit infestations of this invasive species did not become an economic problem for California growers until a decade after SWD’s first detection in California strawberries in 2008. This outbreak corresponds to the development of reported insecticide resistance in SWD populations from strawberry and other berry crops following years of incidental exposure of insecticide applications against other key pests. The objective of this study was to determine the current levels of Drosophila infestation in fresh market and processing strawberries which would inform the choice of insecticides to use for control. We sampled fresh market and processing strawberries from 17 fields over a two-year period in the three major strawberry production areas of California and determined the numbers of emerged SWD and non-SWD Drosophila adult flies. In addition, since holding fruit for adult emergence to determine species composition is impractical for making rapid control decisions and could be inaccurate due to potential interspecific competitions among larvae in the fruit, we developed a TaqMan assay that facilitates larval identification.

Analisis Vegetasi Penyusun Asmin Tropical Rain Forest Conservation 2, PT. Asmin Bara Bronang, Kapuas, Kalimantan Tengah

Asmin Tropical Rain Forest Conservation 2 is a tropical natural forest which is a conservation area of ​​PT Asmin Bronang Kapuas, Central Kalimantan. The designation of new areas was carried out in 2018 and there was no research in the area that required data collection on the types of constituents of the area. The purposes of this research were to determine species composition, species diversity index, species evenness index, species richness index, and species dominance index. The method used in this study was collecting data on plants in area of ​​54.6 hectares with a sampling intensity of 1% using the Uniform Systematic Distribution Sampling with Random Start pattern. There are 14 plots in the form of nested samples with designations for 4 levels of plants (seedlings, saplings, poles, and trees). Results of the research showed that vegetation species composition was dominated by Shorea smithiana (Mahambung) of the Dipterocarpaceae family. Shorea parvifolia (Red Meranti), Euzyderoxylon zwageri (Ulin), Shorea smithiana (Mahambung), Mezzetia parviflora (Pisang-pisang), Syzygium spp. (Jambu-jambu), and Memecylon sumatrense (Kamasulan) are the 6 species that have the best regeneration rate, which are found at all plant levels. The highest IVI was Shorea smithiana (Mahambung) at the seedling was 46.55, pole 55.68, and tree 32.02 levels. At the sapling level, the highest IVI was Baccaurea bracteata Muell (Rambai forest) was 28.76. The species diversity index from seedling to pole level was moderate. At the tree level, the species diversity index was high (3.23). Species evenness index from seedling to tree level including height (0.82-0.92). The species richness index from seedling to pole was moderate. At the tree level, the species diversity index was high (7.45). The species dominance index of all levels was included in the low category (0.05-0.15).

Trait‐based and multi‐scale approach provides insight on responses of freshwater mussels to environmental heterogeneity

AbstractOur understanding of the factors driving the distribution of metacommunities at different scales can be obscured by high variation in species composition between sites and a lack of fine‐scale distribution data. Trait‐based approaches have long been used to better identify and examine ecological patterns. Most recent studies of riverine metacommunities examining trait‐based patterns have focused on shorter lived organisms. Here we focused on a group of longer lived, sedentary riverine organisms, unionid freshwater mussels. The objective of this study was to examine how (1) the distribution of mussels with different life history strategies (trait‐based approach) and (2) the relative importance of environmental and spatial factors (as a proxy for dispersal) would differ with spatial scale and position in the river; and to (3) further compare this with patterns derived from a taxonomic approach. Fine‐scale distribution data of mussels and environmental factors were collected every 100 m in spatially extensive surveys in an upstream and downstream segment (200 sites/20‐km segment) of a semiarid river, making them some of the most spatially intensive surveys documented to date. A combination of redundancy analysis, asymmetric eigenvector mapping, and variation partitioning analyses revealed that more variation was explained by environmental factors where more environmental differences occur between sites. Where environmental heterogeneity was lower, the amount of variation explained by smaller scale spatial factors was higher, likely mostly associated with stochastic rather than dispersal processes. A higher amount of unexplained variation at the taxonomic level suggests that stochasticity may also play an important role in determining species composition. In contrast, different life history groups had a highly predictable distribution pattern driven by environmental heterogeneity, especially between river segments and mesohabitat, which was associated with different flow conditions. The role we predict for environmental heterogeneity and stochasticity in shaping the distribution of mussels in our study river likely also applies to other taxa and ecosystems at a spatial scale at which neither dispersal limitation nor mass effects occur. Thus, understanding the magnitude and extent of dispersal relative to the amount of environmental heterogeneity may be key for predicting metacommunity structure and dynamics for different organisms.

Which demographic processes control competitive equilibria? Bayesian calibration of a size‐structured forest population model

AbstractIn forest communities, light competition is a key process for community assembly. Species' differences in seedling and sapling tolerance to shade cast by overstory trees is thought to determine species composition at late‐successional stages. Most forests are distant from these late‐successional equilibria, impeding a formal evaluation of their potential species composition. To extrapolate competitive equilibria from short‐term data, we therefore introduce the JAB model, a parsimonious dynamic model with interacting size‐structured populations, which focuses on sapling demography including the tolerance to overstory competition. We apply the JAB model to a two‐“species” system from temperate European forests, that is, the shade‐tolerant species Fagus sylvatica L. and the group of all other competing species. Using Bayesian calibration with prior information from external Slovakian national forest inventory (NFI) data, we fit the JAB model to short time series from the German NFI. We use the posterior estimates of demographic rates to extrapolate that F. sylvatica will be the predominant species in 94% of the competitive equilibria, despite only predominating in 24% of the initial states. We further simulate counterfactual equilibria with parameters switched between species to assess the role of different demographic processes for competitive equilibria. These simulations confirm the hypothesis that the higher shade tolerance of F. sylvatica saplings is key for its long‐term predominance. Our results highlight the importance of demographic differences in early life stages for tree species assembly in forest communities.

Вплив нематоди Contracaecum (Ascaris) на риб водойми-охолоджувача Запорізької атомної електростанції

Purpose: To determine species composition and localization of anisakidosis pathogens, infestation of fish species in the Zaporizhzhia NPP cooling reservoir, and identify trends in their infestation compared to monitoring epizootic studies of the last year. Methodology. In the course of the work, we used the generalized results of the studies conducted in the summer and autumn of 2021. The fish species composition in the ZNPP cooling reservoir as well as the species composition of parasites of Anisakidae family and their localization were determined. The studies were carried out using the method of incomplete parasitological dissection of fish at the laboratory. Nematode larvae were detected by visual inspection. The parasites were identified using identification keys. The detected parasites were washed with a saline and stored in 70% ethanol. For the quantitative analysis of the parasitofauna, we used such parameters as prevalence (%) and intensity (ind./ fish). Findings. The parasitological analysis showed that Contracaecum (Ascaris) larvae were found in European, channel and redtail catfishes, which were localized as cysts or free-living in the abdominal cavity. The infestation intensify reached 86 ind./fish, and prevalence reached 100%. The parasites caused hyperemia (redness) and inflammation of internal organs. At the same time, no Contracaecum larvae were found in common and silver carps. Compared to 2020, the infestation of fish was less pronounced, namely: no monogenean Dactylogirus were found on the gills of carps as well as ciliates including Trichodina and Apiosoma, which were found in small amounts on the body surface and gills of common and silver carps. The Contracaecum larvae invasion intensity in catfish decreased by 17 %. Originality. For the first time, a large tendency to the spread of Contracaecum larvae among fish of the ZNPP cooling reservoir was detected, namely in European, channel and redtail catfishes. The importance of the threat of this invasion for fish was established. Practical value. The obtained results can be used to identify timely trends in the infestation of fish by Anisakidae and to develop sanitary and preventive measures in the reservoir. Key words: nematodes, parasites Contracaecum (Ascaris), fish, ZNPP, anisakidosis, prevalence, invasion intensity, anisakids (Anisakidae).

Ensamble de batoideos costeros en el norte del Perú: Conocimiento preliminar

This preliminarily study aims at increasing our understanding of an assemblage of coastal batoids on the northern coast of Peru by determining species composition, body size structure and its behaviour in Los Órganos bay, Piura. During 20 field trips in Los Organos Bay, Piura region, between the years 2016, 2017, and 2019, eighty-six individuals were sampled belonging to eight species: Zapteryx xyster (n= 22), Narcine entemedor (n= 11), Urobatis tumbesensis (n= 7), Urotrygon chilensis (n= 40), Pseudobatos planiceps (n= 1), Urobatis halleri (n= 1), Gymnura crebripunctata (n= 2), Aetobatus laticeps (n= 2). In the study area, a predominance of adult females was observed for Z. xyster, N. entemedor and U. chilensis. These preliminary results suggest that during the morning some batoid species (i.e., Z. xyster, N. entemedor, U. chilensis) use the coastal zone to rest since they are found inactive and partially or totally buried in the sand – N. entemedor could be also hunting through ambush. Future studies should determine if this is a gestation area for some of these batoid species.

Residual malaria transmission and the role of Anopheles arabiensis and Anopheles melas in central Senegal.

Understanding the behavior and ecology of local malaria vectors is essential for the effectiveness of the commonly used vector-targeted malaria control tools in areas of low malaria transmission. This study was conducted to determine species composition, biting behavior and infectivity of the major Anopheles vectors of Plasmodium falciparum in low transmission settings in central Senegal. Adult mosquitoes were collected using human landing catches during 2 consecutive nights and Pyrethrum Spray Catches in 30-40 randomly selected rooms, from July 2017 to December 2018 in 3 villages. Anopheline mosquitoes were morphologically identified using conventional keys; their reproductive status assessed by ovary dissections, and a sub-sample of Anopheles gambiae s.l. were identified to species level using polymerase chain reaction (PCR). Plasmodium sporozoite infections were detected using real-time quantitative PCR. During this study 3684 Anopheles were collected of which 97% were An. gambiae s.l., 0.6% were Anopheles funestus, and 2.4% were Anopheles pharoensis. Molecular identification of 1,877 An. gambiae s.l. revealed a predominance of Anopheles arabiensis (68.7%), followed by Anopheles melas (28.8%), and Anopheles coluzzii (2.1%). The overall human-biting rate of An. gambiae s.l. was highest in the inland site of Keur Martin with 4.92 bites per person per night, while it was similar in the deltaic site, Diofior (0.51) and the coastal site, Mbine Coly (0.67). Parity rates were similar in An. arabiensis (45%) and An. melas (42%). Sporozoite infections were detected in both An. arabiensis and An. melas with the respective infection rates of 1.39% (N = 8) and 0.41% (N = 1). Results suggest that low residual malaria in central Senegal is transmitted by An. arabiensis and An. melas. Consequently, both vectors will need to be targeted as part of malaria elimination efforts in this area of Senegal.

Plant diversity and species composition of the abandoned mines of the Iglesiente mining district (Sardinia, Italy): A restoration perspective

The ‘metalliferous ring’ of Iglesiente was for centuries the most important mining district of Italy. After a marked decline in mining activities, alternative management strategies were proposed to face issues mainly related to unemployment and environmental pollution. We focused on the coastal section of the mining district, in order to evaluate the development of vegetation after disturbance and assess the conservation value of the study area. The floristic composition in terms of species richness, number of endemics, evenness, life form diversity, vegetation and cryptogamic covers were analysed for 96 vegetation samples. Three main plant assemblages with 227 vascular plant species and 18 endemics were described. The most influential variable in determining species composition was the herbivory, which negatively affects species richness, endemic species richness and life form diversity and, positively, the evenness. Other influential variables were elevation, positively associated with species and endemic species richness, and the degree of debris/rock flow, which negatively influences species richness and life form diversity. Soil grain size positively influences evenness and negatively life form diversity and vegetation cover. The number of years of mining inactivity was only positively influencing life form diversity. Each identified community, especially those characterised by perennial herbs and small shrubs, can provide surrogate habitats for many endemic plants, which can be in turn used for phytostabilization and remediation. Further indications for strategic management of these mining environments, where policy and long-term monitoring are necessary interrelated strategies, were provided.

Plant Biodiversity Homogenization across the Chronosequence in Highly Fragmented Landscapes in the Colombian Andean–Amazonian Transition

Succession in abandoned pastures in the tropics can progress along different pathways, and the changes in biodiversity on local and landscape scales, as well as in species turnover (β diversity), are still unclear. This study assessed the role of secondary forests as a plant biodiversity reservoir or as evidence of a pattern of biodiversity homogenization in a chronosequence of abandoned pastures in two highly fragmented landscapes (hills and mountains) in the Colombian Amazon. In each landscape, the plant community composition, growth habits, species richness accumulation, indicator species identification, composition dissimilarity, and influence of above- and below-ground environmental filters were evaluated in four successional stages: (i) degraded pastures (DP) (&lt;3 years old), (ii) early forests (EF) (10–20 years old), (iii) intermediate forests (IF) (25–40 years old), and (iv) old-growth forests (OF) (&gt;90 years old). A total of 918 species, 78 families, and 11,284 individuals were recorded. The most representative growth habits were trees and shrubs, while palms and lianas were minimal. The species accumulated rapidly in DP and EF, contrary to that observed in IF and OF; thus, DP and EF achieve inventory completeness faster than IF and OF. It was necessary to include more plots to obtain inventory completeness in IF and OF. OF had a high α diversity with similar species composition throughout (low β diversity) and high homogeneity, suggesting biotic homogenization. On the other hand, IF presented the highest species differentiation (high β diversity) and a higher divergence in species composition than OF. The spatial distance and environmental dissimilarity had the most important role in determining species composition. Finally, our results show divergence in the plant composition across the chronosequence, where DP was opposite from OF in hills. However, in mountains, DP followed the EF and IF categories. The deviation in the species composition in EF and IF suggests an exchange of species in intermediate forest ages.