Magnetic resonance electrical impedance tomography (MREIT) is a non-invasive technique for imaging the internal conductivity distribution in tissue within an MRI scanner, utilizing the magnetic flux density, which is introduced when a current is injected into the tissue from external electrodes. This magnetic flux alters the MRI signal, so that appropriate reconstruction can provide a map of the additional z-component of the magnetic field (Bz) as well as the internal current density distribution that created it. To extract the internal electrical properties of the subject, including the conductivity and/or the current density distribution, MREIT techniques use the relationship between the external injection current and the z-component of the magnetic flux density B = (Bx, By, Bz). The tissue studied typically contains defective regions, regions with a low MRI signal and/or low MRI signal-to-noise-ratio, due to the low density of nuclear magnetic resonance spins, short T2 or T*2 relaxation times, as well as regions with very low electrical conductivity, through which very little current traverses. These defective regions provide noisy Bz data, which can severely degrade the overall reconstructed conductivity distribution. Injecting two independent currents through surface electrodes, this paper proposes a new direct method to reconstruct a regional absolute isotropic conductivity distribution in a region of interest (ROI) while avoiding the defective regions. First, the proposed method reconstructs the contrast of conductivity using the transversal J-substitution algorithm, which blocks the propagation of severe accumulated noise from the defective region to the ROI. Second, the proposed method reconstructs the regional projected current density using the relationships between the internal current density, which stems from a current injection on the surface, and the measured Bz data. Combining the contrast conductivity distribution in the entire imaging slice and the reconstructed regional projected current density, we propose a direct non-iterative algorithm to reconstruct the absolute conductivity in the ROI. The numerical simulations in the presence of various degrees of noise, as well as a phantom MRI imaging experiment showed that the proposed method reconstructs the regional absolute conductivity in a ROI within a subject including the defective regions. In the simulation experiment, the relative L2-mode errors of the reconstructed regional and global conductivities were 0.79 and 0.43, respectively, using a noise level of 50 db in the defective region.
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