Increasing wastewater treatment efficiency is a primary aim in the circular economy. Wastewater physicochemical and biochemical processes are quite complex, often requiring a combination of statistical and machine learning tools to empirically model them. Since wastewater treatment plants are large-scale operations, the limited opportunities for extensive experimentation may be offset by miniaturizing experimental schemes through the use of fractional factorial designs (FFDs). A recycling quality improvement study that relies on non-linear multi-objective multi-parameter FFD (NMMFFD) datasets was reanalyzed. A published NMMFFD ultrafiltration screening/optimization case study was re-examined regarding how four controlling factors affected three paper mill recycling characteristic responses using a combination of statistical and machine learning methods. Comparative machine learning screening predictions were provided by (1) quadratic support vector regression and (2) optimizable support vector regression, in contrast to quadratic linear regression. NMMFFD optimization was performed by employing Pareto fronts. Pseudo-screening was applied by decomposing the replicated NMMFFD dataset to single replicates and then testing their replicate repeatability by introducing belief functions that sought to maximize credibility and plausibility estimates. Various versions of belief functions were considered, since the novel role of the three process characteristics, as independent sources, created a high level of conflict during the information fusion phase, due to the inherent divergent belief structures. Correlations between two characteristics, but with opposite goals, may also have contributed to the source conflict. The active effects for the NMMFFD dataset were found to be the transmembrane pressure and the molecular weight cut-off. The modified adjustment was pinpointed to the molecular weight cut-off at 50 kDa, while the optimal transmembrane pressure setting persisted at 2.0 bar. This mixed-methods approach may provide additional confidence in determining improved recycling process adjustments. It would be interesting to implement this approach in polyfactorial wastewater screenings with a greater number of process characteristics.