The geochemical data from sediments in avulsion channels provide historical evidence of climate change and human-induced alterations in river basin environments. The present study focused on the particle size of sediments in cores and the level of geochemical variation in avulsion channels of the Lower Yellow River Delta (YRD), China. The sediment samples were collected in a depth range of 20–400 cm in avulsion channels. The collected samples were analyzed for sediment particle size and geochemical composition using standard methods. The results demonstrated rapid increases in agriculture practices, rainfall pattern changes, and terrestrial sediment runoff reduction in river basins after the 1960s. The reduced sediment loads in the Sanmenxia Reservoir significantly changed the sediment grain size and geochemical levels in the avulsion channel from August 1960.8 to January −1961.1. In particular, TC, TN, and C/N levels decreased with increasing sediment depth. The C/N values of <12 denoted completely reduced terrestrial sources of organic matter in the channel during the August 1960–January 1961 period compared to the July 1953–August 1960 period. The two-way ANOVA p-values were (p <0.016-p<0.001) strong between the avulsion periods but had no significant variation within the avulsion periods. We emphasize that this study provides a close interplay of different historical periods of geochemical variation in avulsion channel sediments in the alluvial fan YRD, and we argue that the evolution of the middle upstream river basin was subjective by climate change and human developmental actions, which impacted the YRD. In particular, reservoir-interrupted water flow and sediment reduction impacts associated with geochemical fluctuations are documented in the YRD.