Delta H0 Research Articles

Ranking the Bronsted Acid Strength of Protonic Zeolites with VTIR Spectroscopy --- An Overview of Current Research

Many industrial applications of protonic zeolites as solid-acid heterogeneous catalysts rely on the strength or their Br nsted acidity, which (together with zeolite topology) affects both, catalytic activity and selectivity. Therefore, the convenience to have an accurate (and simple) experimental technique for measuring Br nsted acid strength. The enthalpy change, Delta H0, corresponding to the hydrogen bonding interaction of a weak base (such as CO or dinitrogen) with their Br nsted acid [Si(OH)Al] hydroxyl groups should directly correlate with the zeolite acid strength. Nevertheless, because of simplicity, the bathochromic shift of the O-H stretching frequency, Deltaν(OH), is usually measured by IR spectroscopy at a low temperature, and correlated with acid strength, for ranking zeolite acidity. Herein the use of variable-temperature IR (VTIR) spectroscopy to determine simultaneously Delta H0 and Deltaν(OH) is demonstrated; followed by an abridged overview showing that direct correlation between Deltaν(OH) and Br.nsted acid strength can be misleading when ranking zeolite acidity. Keywords: VTIR spectroscopy, br nsted acidity, H-zeolites

Prototypical π-π dimers re-examined by means of high-level CCSDT(Q) composite ab initio methods.

The benzene-ethene and parallel-displaced (PD) benzene-benzene dimers are the most fundamental systems involving π-π stacking interactions. Several high-level ab initio investigations calculated the binding energies of these dimers using the coupled-cluster with singles, doubles, and quasi-perturbative triple excitations [CCSD(T)] method at the complete basis set [CBS] limit using various approaches such as reduced virtual orbital spaces and/or MP2-based basis set corrections. Here, we obtain CCSDT(Q) binding energies using a Weizmann-3-type approach. In particular, we extrapolate the self-consistent field (SCF), CCSD, and (T) components using large heavy-atom augmented Gaussian basis sets [namely, SCF/jul-cc-pV{5,6}Z, CCSD/jul-cc-pV{Q,5}Z, and (T)/jul-cc-pV{T,Q}Z]. We consider post-CCSD(T) contributions up to CCSDT(Q), inner-shell, scalar-relativistic, and Born-Oppenheimer corrections. Overall, our best relativistic, all-electron CCSDT(Q) binding energies are ∆Ee,all,rel = 1.234 (benzene-ethene) and 2.550 (benzene-benzene PD), ∆H0 = 0.949 (benzene-ethene) and 2.310 (benzene-benzene PD), and ∆H298 = 0.130 (benzene-ethene) and 1.461 (benzene-benzene PD) kcal mol-1. Important conclusions are reached regarding the basis set convergence of the SCF, CCSD, (T), and post-CCSD(T) components. Explicitly correlated calculations are used as a sanity check on the conventional binding energies. Overall, post-CCSD(T) contributions are destabilizing by 0.028 (benzene-ethene) and 0.058 (benzene-benzene) kcal mol-1, and thus, they cannot be neglected if sub-chemical accuracy is sought (i.e., errors below 0.1 kcal mol-1). CCSD(T)/aug-cc-pwCVTZ core-valence corrections increase the binding energies by 0.018 (benzene-ethene) and 0.027 (benzene-benzene PD) kcal mol-1. Scalar-relativistic and diagonal Born-Oppenheimer corrections are negligibly small. We use our best CCSDT(Q) binding energies to evaluate the performance of MP2-based, CCSD-based, and lower-cost composite ab initio procedures for obtaining these challenging π-π stacking binding energies.

Low damping and microstructural perfection of sub-40nm-thin yttrium iron garnet films grown by liquid phase epitaxy

The field of magnon spintronics is experiencing an increasing interest in the development of solutions for spin-wave-based data transport and processing technologies that are complementary or alternative to modern CMOS architectures. Nanometer-thin yttrium iron garnet (YIG) films have been the gold standard for insulator-based spintronics to date, but a potential process technology that can deliver perfect, homogeneous large-diameter films is still lacking. We report that liquid phase epitaxy (LPE) enables the deposition of nanometer-thin YIG films with low ferromagnetic resonance losses and consistently high magnetic quality down to a thickness of 20 nm. The obtained epitaxial films are characterized by an ideal stoichiometry and perfect film lattices, which show neither significant compositional strain nor geometric mosaicity, but sharp interfaces. Their magneto-static and dynamic behavior is similar to that of single crystalline bulk YIG. We found, that the Gilbert damping coefficient alpha is independent of the film thickness and close to 1 x 10-4, and that together with an inhomogeneous peak-to-peak linewidth broadening of delta H0|| = 0.4 G, these values are among the lowest ever reported for YIG films with a thickness smaller than 40 nm. These results suggest, that nanometer-thin LPE films can be used to fabricate nano- and micro-scaled circuits with the required quality for magnonic devices. The LPE technique is easily scalable to YIG sample diameters of several inches.

Breath Tests for the Non-invasive Diagnosis of Small Intestinal Bacterial Overgrowth: A Systematic Review With Meta-analysis.

Background/AimsSmall intestinal bacterial overgrowth (SIBO) diagnosis is usually based on non-invasive breath tests (BTs), namely lactulose BT (LBT) and glucose BT (GBT). However, divergent opinions and problems of parameter standardization are still controversial aspects. We aim to perform a meta-analysis to analyze diagnostic performance of LBT/GBT for SIBO diagnosis.MethodsWe searched in main literature databases articles in which SIBO diagnosis was achieved by LBT/GBT in comparison to jejunal aspirate culture (reference gold standard). We calculated pooled sensitivity, specificity, positive, and negative likelihood ratios and diagnostic odd ratios. Summary receiver operating characteristic curves were drawn and pooled areas under the curve were calculated.ResultsWe selected 14 studies. Pooled sensitivity of LBT and GBT was 42.0% and 54.5%, respectively. Pooled specificity of LBT and GBT was 70.6% and 83.2%, respectively. When delta over baseline cut-off > 20 H2 parts per million (ppm) was used, GBT sensitivity and specificity were 47.3% and 80.9%; when the cutoff was other than and lower than > 20 ppm, sensitivity and specificity were 61.7% and 86.0%. In patients with abdominal surgery history, pooled GBT sensitivity and specificity gave the impression of having a better performance (81.7% and 78.8%) compared to subjects without any SIBO predisposing condition (sensitivity = 40.6% and specificity = 84.0%).ConclusionsGBT seems to work better than LBT. A cut-off of delta H2 expired other than and lower than > 20 ppm shows a slightly better result than > 20 ppm. BTs demonstrate the best effectiveness in patients with surgical reconstructions of gastrointestinal tract.

Sorption of Pb(II) by poly(hydroxamic acid) grafted oil palm empty fruit bunch

This paper describes the sorption of Pb(ll) from aqueous solution. Oil palm empty fruit bunch (OPEFB) fiber was first grafted with poly(methylacrylate) and then treated with hydroxylammonium chloride in alkaline medium to produce hydroxamic acid (PHA) grafted OPEFB. Sorption of Pb(ll) by PHA-OPEFB was maximum at pH 5. The sorption followed the Langmuir model with maximum capacityof 125.0 mg g-1 at 25 degrees C. The sorption process was exothermic, as shown by the negative value of enthalpy change, Delta H0. The free energy change (DeltaG0) for the sorption was negative, showing that the sorption process was spontaneous. A kinetic study showed that the Pb(ll) sorption followed a second order kinetic model.

High Daily Fructose Intake Induces Intestinal Carriers: A Maladaptive Response

Purpose: Polymers of fructose are important prebiotics promoting lactic acid bacteria, yet monosaccharide fructose is associated with obesity and some illnesses. Little exists on whether colonic adaptation occurs with regular fructose consumption. We undertook this study to evaluate effects of fructose on symptoms, physiologic response and microbial flora. Methods: 45 healthy subjects (20M, 25F) undertook a 50g fructose challenge. Breath hydrogen for 4.5 hr (TBH2, hydrogenmeter EC 60 Bedfont), symptom score on a 4 point likert scale and fecal bacteria (N38) (total anaerobes, bifidobacteria and lactobacilli by quantitative culture) were measured. A 3 day diet recall questionnaire was used to asses average daily pretest fructose intake. All 26 fructose intolerant (57.8%) subjects were assigned either 30 g fructose intake BID for 2 weeks (16, group F) or were controls (10 group C1). Subjects returned for repetiton of tests. 10 fructose assigned subjects also returned 2 weeks later off fructose (group C) and a third set of tests were repeated (excluding stool). Paired t, unpaired t and Pearson correlations were carried out where appropriate. Significance was accepted at p<0.05. ClinTrials.gov NCT00775567. Results: Compared to test 1, no symptomatic improvement occurred in test 2 for (F) or (C1), nor in test 3 for group (C). Total breath hydrogen decreased significantly in group (C) (delta H2, 97.3±128sd ppm, p=0.04). After excluding a single outlier in group (F), there was also a significant test 2 decrease in total BH2 (delta101±169sd ppm,p=0.036). Comparison of TBH2 between (F) and (C1) was also significant p=0.003. In C1, BH2 change was insignificant (delta-57.7±222sd ppm, p=0.48). There were no discernable effects of fructose intake on bifidobacteria or lactobacilli in test 2 within (change in test2-testl) or between (test 2 only) groups (F) or (C1) or in test 1 in subjects consuming less than 20g fructose daily. In a small set (N5) of subjects in test 1 consuming >20g/d fructose, there was a weak inverse correlation with these bacteria p<0.1>0.05 (prebiotic effect should be positive). Conclusion: Failure to improve symptoms and to impact on fecal bacteria while reducing breath hydrogen after intake of large doses of fructose suggest that the possible mechanism is via induction of fructose carriers. This induction is still evident at 2 weeks. Bacterial adaptation has different observable features. This maladaptive process should lead to proscription of prolonged intake of high doses of monosaccharide fructose.

Thermal Decomposition of ClOOCl

ClOOCl was prepared in situ in a temperature controlled photoreactor (v = 420 L) by photolyzing OClO/N2 mixtures in the wavelength range 300-500 nm at temperatures between 242 and 261 K and total pressures between 2 and 480 mbar. After switching off the lights, excess NO2 was added, and IR and UV spectra were monitored simultaneously as a function of time. By spectral stripping of all other known UV absorbers (in particular, other chlorine oxides and chlorine nitrate), we determined rate constants k-1 of the reaction ClOOCl (+M) --> ClO + ClO (+M) from the first-order decay of the residual UV absorption of ClOOCl at 246 and 255 nm. k-1,0 = [N2] x 7.6 x 10(-9) exp[(-53.6 +/- 6.0) kJ mol(-1)/RT] cm3 molecule(-1) s(-1) (2sigma) was derived for the low-pressure limiting rate constant. Application of Troe's expression for the limiting low-pressure rate constants of unimolecular decomposition reactions leads to E0 = Delta(r)H0(0)(ClOOCl-->ClO+ClO) = 66.4 +/- 3.0 kJ mol(-1). k-1,0 started to fall off from the pressure proportional low pressure behavior at p approximately 30 mbar; however, reliable extrapolation to the high pressure limit was not possible. The decomposition rate constants of ClOOCl were directly measured for the first time, and they are higher, depending on temperature and pressure, by factors between 1.5 and 4.2 as compared to experimental data on k-1 by Nickolaisen et al. [J. Phys. Chem. 1994, 98, 155] which were derived from the approach of ClO to thermal equilibrium with its dimer ClOOCl. Combination of the present dissociation rate constants with recommended temperature and pressure dependent data on the reverse reaction (k1) demonstrate inconsistencies between the dissociation and recombination rate constants. Summarizing laboratory data on k1 and k-1 above 250 K and field measurements on the ClO + ClO <= => ClOOCl equilibrium in the nighttime polar stratosphere close to 200 K, the expression Kc = k1/k-1 = 3.0 x 10(-27) exp(8433 K/T) cm3 molecule(-1) is derived for the temperature range 200-300 K.

Appearance Potential of CF3+ in the Dissociative Photoionization of CF3Br

Measurements of the appearance potential for the production of CF3+ in the photoionization of CF3Br are in sharp disagreement, contributing to controversy in the heat of formation of CF3+. We reexamine our previous work and add additional experiments, obtaining AP(CF3+/CF3Br) = 11.64 +/- 0.04 eV as the average of four measurements made under widely different conditions. This is higher by 0.08 eV than the value we reported previously. Our new value for Delta(f)H0 degrees (CF3+) is now 88.0 +/- 0.9 kcal mol(-1). We compare our method with other techniques.

Evidencing a reaction intermediate in the formation of the EuIII bimetallic complex with p-tert-butylcalix[8]arene

In view of the very few mechanistic information available on the complex formation between lanthanide ions and calixarenes, we study here the reaction mechanism leading to the formation of the bimetallic complex between Eu(III) and p-tert-butylcalix[8]arene (b-LH8). We show that in dmf, the 1 : 1 complex [Eu(b-LH6)(NO3)(dmf)4] partially dissociates into a compound A which is an important intermediate in the formation of bimetallic [Eu2(b-LH2)(dmf)5]. Several spectroscopic (ES-MS, visible, luminescence, FT-IR) and conductometric techniques are combined with variable-temperature and variable-pressure experiments to demonstrate that in absence of base, intermediate A is the cationic species [Eu(b-LH6)(dmf)4]+. The thermodynamic parameters of the dissociation reaction, K5(298) = (4 +/- 1) x 10(-5) M, delta H0 = +16 +/- 3 kJ mol(-1), delta S0 = -30 +/- 11 J mol(-1) K(-1) as well as the reaction volume delta V0 = +9.4 +/- 0.9 cm3 mol(-1) are evaluated and rationalized. In presence of triethylamine, intermediate A deprotonates to generate the neutral species A' = [Eu(b-LH5)(dmf)4], which, in turn, further reacts with europium nitrate to yield the bimetallic complex. In addition, the pKas of the parent calixarene LH8, of b-LH8 and of p-iso-propylcalix[8]arene are determined in dmf, as well as the association constant between b-LH8 and triethylamine, K assoc = (9 +/- 1) x 10(3) M(-1).

The reaction of S-nitroso-N-acetyl-d,l-penicillamine (SNAP) with the angiotensin converting enzyme inhibitor, captopril—mechanism of transnitrosation

Kinetic studies involving the use of both stopped-flow and diode array spectrophotometers, show that the reaction between SNAP and captopril in the presence of the metal ion sequestering agent, EDTA, occurs in two well-defined stages. The first stage is a fast reaction while the second stage is slow. The first stage has been postulated to be transnitrosation, and the second stage involves the decay of the newly formed RSNO to effect nitric oxide (NO) release. Both stages are found to be dependent on captopril and H+ concentration. The rates of the transnitrosation increased drastically with increasing pH in the first stage, signifying that the deprotonated form of captopril is the more reactive species. In the case of the second stage the variation in pH showed an increase in rate up to pH 8 after which the rate remained unchanged. Both stages were clearly distinguishable and easily monitored separately. Transnitrosation is a reversible reaction with the tendency for the equilibrium to break down at high thiol concentration. Second-order rate constants were calculated based on the following derived expressions: -d[SNAP]/dt=k(f)((K(SHCapSH)[CapSH](t))/(K(SHCapSH)+[H+]))[SNAP]. k(f) is the second-order rate constant for the forward reaction of the reversible transnitrosation process. At 37 degrees C, k(f)= 785 +/- 14 M(-1) s(-1), activation parameters [Delta]H(f)++= 49 +/- 2 kJ mol(-1), (Delta)S(f)++=-32 +/- 2 J K(-1) mol(-1). The activation parameters demonstrate the associative nature of the transnitrosation mechanism. The second stage has been found to be very complex, as a variety of nitrogen products form as predicted before. However, the following expression was derived from the initial kinetic data: rate =k1K[SNOCap][CapS-]/(K[CapS-]+ 1) to give k1= 13.3 +/- 0.4 x 10(-4) s(-1) and K= 5.59 +/- 0.53 x 10(4) M(-1), at 37 degrees C, where k1 is the first-order rate constant for the decay of the intermediate formed during the reaction between SNOCap and the remaining excess CapSH present at the end of the first stage reaction. Activation parameters are (Delta)H1++= 37 +/- 1 kJ mol(-1), (Delta)S1++=-181 +/- 44 J K(-1) mol(-1).

Improper hydrogen C-H...O bonds cause self-association of alpha, beta-enaminoketones containing fluorosubstituted alkyl groups.

Concentration- and temperature-dependent IR, NMR and dipole-moment studies on 4-N,N-dimethylamino-1,1,1-trifluoro-3-buten-2-one and two of its higher homologues showed that these compounds undergo reversible dimerization in nonpolar solvents. Antiparallel "closed" dimers are formed with a network of improper intermolecular C-H...O hydrogen bonds. Quantitative analysis of the 1H NMR data yielded delta H0 = -17.6 kJ mol-1 and delta S0 = -46.9 J deg-1 mol-1. The interactions observed are the strongest among those involving a C-H group reported so far. The complex described here is the first example of a cyclic complex stabilized by two improper C-H...O hydrogen bonds. The conclusions drawn from the solution and solid-state data were confirmed by ab initio calculations.

Lactose intolerance: a risk factor for reduced bone mineral density and vertebral fractures?

The purpose of the present study was to determine differences, if any, in bone mineral density, the risk of fracture, and clinical behavior in patients with lactose intolerance investigated by hydrogen breath test. The study population (n = 218; age, mean +/- SD, 58.2 +/- 11.5 years) consisted of 103 healthy individuals negative hydrogen breath test (Delta H2 0-20 ppm; group I), and 115 individuals with evidence of lactose intolerance according to the hydrogen breath test (Delta H2 > 20 ppm), of whom 40 individuals had test results of 20 ppm < Delta H2 < 59 ppm (group II). The remaining 75 individuals were strongly positive on the hydrogen breath test (Delta H2 > 60 ppm; group III). The entire study population was measured for bone mineral density in the nondominant forearm and in the vertebra (quantitative computed tomography [qCT]). Radiographs of the spine were studied for fractures. In healthy individuals, bone mineral density in the vertebra assessed by qCT (mean +/- SD, 111.2 +/- 31 mg/cc) did not significantly differ between those with mild (qCT, mean +/- SD, 109.8 +/- 35 mg/cc) and those with severe (qCT, mean +/- SD, 107.7 +/- 36 mg/cc) lactose intolerance. Lactose-intolerant individuals had more vertebral fractures per patient when compared with those with mild lactose intolerance or controls ( P < 0.05). Considering vertebral and self-reported non-vertebral fractures, no statistically significant differences were found. In the entire group, the overall occurrences of fracture in the presence of lactose intolerance and in controls were comparable after correction for age and body mass index (BMI). Individuals with lactose intolerance verified by the hydrogen breath test appear not to be at risk for accelerated bone loss. Nevertheless, a relationship between vertebral fractures and an apparent lactose intolerance cannot be excluded, as a few individuals with severe lactose intolerance had a large number of vertebral fractures.

Temperature dependence of Henry's law constant in an extended temperature range.

The Henry's law constants H for chloroform, 1,1-dichloroethane, 1,2-dichloropropane, trichloroethene, chlorobenzene, benzene and toluene were determined by the EPICS-SPME technique (equilibrium partitioning in closed systems--solid phase microextraction) in the temperature range 275-343 K. The curvature observed in the ln H vs. 1/T plot was due to the temperature dependence of the change in enthalpy delta H0 during the transfer of 1 mol solute from the aqueous solution to the gas phase. The nonlinearity of the plot was explained by means of a thermodynamic model which involves the temperature dependence of delta H0 of the compounds and the thermal expansion of water in the three-parameter equation ln (H rho TT) = A2/T + BTB + C2, where rho T is the density of water at temperature T, TB = ln(T/298) + (298-T)/T, A2 = -delta H298(0)/R, delta H298(0) is the delta H0 value at 298 K, B = delta Cp0/R, and C2 is a constant. delta Cp0 is the molar heat capacity change in volatilization from the aqueous solution. A statistical comparison of the two models demonstrates the superiority of the three-parameter equation over the two-parameter one ln H vs. 1/T). The new, three-parameter equation allows a more accurate description of the temperature dependence of H, and of the solubility of volatile organic compounds in water at higher temperatures.

Redox chemistry and acid-base equilibria of mitochondrial plant cytochromes c.

Mitochondrial cytochromes c from spinach, cucumber, and sweet potato have been investigated through direct electrochemical measurements and electronic and 1H NMR spectroscopies, under conditions of varying temperature and pH. The solution behaviors of these plant cytochromes closely resemble, but do not fully reproduce, those of homologous eukaryotic species. The reduction potentials (E0') at pH 7 and 25 degrees C are +0.268 V (spinach), +0.271 V (cucumber), and +0.274 V (sweet potato) vs SHE. Three acid-base equilibria have been determined for the oxidized proteins with apparent pKa values of 2.5, 4.8, and 8.3-8.9, which are related to disruption of axial heme ligation, deprotonation of the solvent-exposed heme propionate-7 and replacement of the methionine axially bound to the heme iron with a stronger ligand, respectively. The most significant peculiarities with respect to the mammalian analogues include: (i) less negative reduction enthalpies and entropies (Delta S0'rc and Delta H0'rc) for the various protein conformers [low- and high-T native (N1 and N2) and alkaline (A)], whose effects at pH 7 and 25 degrees C largely compensate to produce E degrees ' values very similar to those of the mammalian proteins; (ii) the N1 --> N2 transition that occurs at a lower temperature (e.g., 30-35 degrees C vs 50 degrees C at pH 7. 5) and at a lower pH (7 vs 7.5); and (iii) a more pronounced temperature-induced decrease in the pKa for the alkaline transition which allows observation of the alkaline conformer(s) at pH values as low as 7 upon increasing the temperature above 40 degrees C. Regarding the pH and the temperature ranges of existence of the various protein conformers, these plant cytochromes c are closer to bacterial cytochromes c2.

How and how much can Hoechst 33258 cause unwinding in a DNA duplex?

The effect of Hoechst 33258 binding on the geometry of a DNA duplex (plasmid pBR322) has been examined using topoisomerase II relaxation followed by gel electrophoresis. Of this drug-DNA system, fluorescence, optical absorption, and calorimetric measurements were also made at various drug and DNA concentrations and in the same buffer as that for the topoisomerase reaction. It has been confirmed that there are two modes of drug-DNA interaction. When the drug concentration is much lower than the DNA base pair concentration, the Hoechst 33258 molecule binds in the minor groove of the DNA duplex and occupies a site formed of five continuous base pair sequences that contain no G.C pair. Here, the equilibrium constant K1 is 1.8 x 10(7) M-1 (at 37 degrees C), and the enthalpy of binding delta H1 is -865 cal/mol. When the drug concentration is much higher, on the other hand, it shows another binding mode which is much weaker, so that K2 = 2.25 x 10(4) M-1 and delta H2 is -464 cal/mol, which gives fluorescence quenching, which has no base pair preference, and which causes an unwinding of the duplex by 1 degree.

Mechanism and kinetics of inactivation at 40-70 degrees C of the extracellular proteinase from Pseudomonas fluorescens 22F.

HPLC size exclusion chromatography experiments showed that during inactivation at 40-70 degrees C of the extracellular proteinase from Pseudomonas fluorescens 22F small molecular mass fragments were formed, indicating that autoproteolysis was at least one of the major causes of inactivation. The formation of small molecular mass fragments and the reaction order indicated that intermolecular autoproteolysis was more likely than intramolecular autodigestion. This was confirmed by computer simulations. The rate constants and the activation enthalpy (delta H++) and entropy (delta S++) for the reactions of the intermolecular autoproteolysis model were derived from computer simulations. delta H++ and delta S++ of the unfolding reaction were 504 kJ mol-1 and 1252 J mol K-1 respectively. delta H++ and delta S++ of the refolding reaction were strongly temperature dependent. The estimates for the enthalpy (delta H0) and entropy (delta S0) difference between the folded and unfolded state as derived from the reaction rate constants of unfolding and refolding were subject to large deviations, owing to accumulation of errors in the estimation of the kinetic characteristics.

Thermodynamic stability of annexin V E17G: equilibrium parameters from an irreversible unfolding reaction.

Conformational stability of the membrane-binding protein annexin V E17G has been determined by high-sensitivity differential scanning microcalorimetry (DSC) measurements and by isothermal, guanidinium hydrochloride (GdnHCl)-induced unfolding studies. Wild-type annexin V and the E17G mutant protein studied here are structurally almost identical. Therefore, it can be expected that the present results will not deviate significantly from the stability data of the wild-type molecule. Thermal unfolding is irreversible, while GdnHCl unfolding shows a high degree of reversibility. We were able to demonstrate that characteristic features of annexin V E17G unfolding permit us to extract from the kinetically controlled heat capacity curves thermodynamic equilibrium parameters at the high heating rates. The thermodynamic quantities obtained from the DSC studies in phosphate buffer at pH 7.0 are as follows: t1/2 = 54.7 degrees C (heating rate of 2.34 K min-1), delta H0 = 690 kJ mol-1, and delta Cp = 10.3 kJ mol-1 K-1 which correspondends to a value of delta G0D (20 degrees C) of 53.4 kJ mol-1. When compared on a per gram basis, these thermodynamic parameters classify annexin V E17G as a marginally stable protein. This conclusion is consistent with structural and functional features of the protein that require conformational adaptability for hinge-bending motions and pore formation on interaction with membranes. We observed a large difference between the change in the Gibbs energy value derived from the heat capacity studies and that determined from the GdnHCl unfolding curve. The difference appears to stem from a specific interaction of the protein with the denaturant that results in both a low half-denaturation concentration C1/2 of 1.74 M and a small slope (6.0 kJ L mol-2) of the delta Gapp versus [GdnHCl] plot. The extraordinary interaction of annexin V with GdnHCl is also manifested in the enormous depression of the transition temperature delta t1/2 (= 18 degrees C) when the GdnHCl concentration is increased from 0 to 1 M. "Regular" proteins experience an average decrease in the transition temperature of 8 +/- 2 degrees C per 1 M change in the concentration of GdnHCl.

Temperature dependence of the preferential interactions of ribonuclease A in aqueous co-solvent systems: thermodynamic analysis.

The temperature dependence of preferential solvent interactions with ribonuclease A in aqueous solutions of 30% sorbitol, 0.6 M MgCl2, and 0.6 M MgSO4 at low pH (1.5 and 2.0) and high pH (5.5) has been investigated. This protein was stabilized by all three co-solvents, more so at low pH than high pH (expect 0.6 M MgCl2 at pH 5.5). The preferential hydration of protein in all three co-solvents was high at temperatures below 30 degrees C and decreased with a further increase in temperature (for 0.6 M MgCl2 at pH 5.5, this was not significant), indicating a greater thermodynamic instability at low temperature than at high temperature. The preferential hydration of denatured protein (low pH, high temperature) was always greater than that of native protein (high pH, high temperature). In 30% sorbitol, the interaction passed to preferential binding at 45% for native ribonuclease A and at 55 degrees C for the denatured protein. Availability of the temperature dependence of the variation with sorbitol concentration of the chemical potential of the protein, (delta mu(2)/delta m3)T,p,m2, permitted calculation of the corresponding enthalpy and entropy parameters. Combination with available data on sorbitol concentration dependence of this interaction parameter gave (approximate) values of the transfer enthalpy, delta H2,tr, and transfer entropy delta S2,tr. Transfer of ribonuclease A from water into 30% sorbitol is characterized by positive values of the transfer free energy, transfer enthalpy, transfer entropy, and transfer heat capacity. On denaturation, the transfer enthalpy becomes more positive. This increment, however, is small relative to both the enthalpy of unfolding in water and to the transfer enthalpy of the native protein from water a 30% sorbitol solution.

Structural and Thermodynamic Characterization of the Interaction of the SH3 Domain from Fyn with the Proline-Rich Binding Site on the p85 Subunit of PI3-Kinase

The interaction of the Fyn SH3 domain with the p85 subunit of PI3-kinase is investigated using structural detail and thermodynamic data. The solution structure complex of the SH3 domain with a proline-rich peptide mimic of the binding site on the p85 subunit is described. This indicates that the peptide binds as a poly(L-proline) type II helix. Circular dichroism spectroscopic studies reveal that in the unbound state the peptide exhibits no structure. Thermodynamic data for the binding of this peptide to the SH3 domain suggest that the weak binding (approximately 31 microM) of this interaction is, in part, due to the entropically unfavorable effect of helix formation (delta S0 = -78 J.mol-1.K-1). Binding of the SH3 domain to the intact p85 subunit (minus its own SH3 domain) is tighter, and the entropic and enthalpic contributions are very different from those given by the peptide interaction (delta S0 = +252 J.mol-1.K-1; delta H0 = +44 kJ.mol-1). From these dramatically different thermodynamic measurements we are able to conclude that the interaction of the proline-rich peptide does not effectively mimic the interaction of the intact p85 subunit with the SH3 domain and suggest that other interactions could be important.

DNA and RNA oligomer sequences from the 3' noncoding region of the chicken glutamine synthetase gene from intramolecular hairpins.

The DNA sequence of the chicken glutamine synthetase gene contains an A.T-rich stretch of approximately 1500 base pairs in the 3' noncoding regions of exon 7 [Pu, H., & Young, A. P. (1989) Gene 18, 169-175]. Within this region several palindromic sequences occur that could conceivably form intramolecular structures. One such perfect inverted repeat sequence resides between positions 2605 and 2623. To investigate the hairpin-forming potential for this sequence, optical and calorimetric melting and gel electrophoresis studies have been performed on the following synthetically prepared DNA and RNA oligomer subsequences: DNA, 5'd-T-T-T-T-T-T-A-A-T-A-A-T-T-A-A-A-A-A-A-3'; and RNA, 5'r-U-U-U-U-U-U-A-A-U-A-A-U-U-A-A-A-A-A-A-3'. The DNA strand corresponds to the coding strand sequence while the RNA strand represents the transcribed mRNA. Results of melting analysis of these 19-base, partially self-complementary strands performed in 115 mM Na+ yielded evaluations of their thermodynamic transition parameters. These values are consistent with the melting of unimolecular structures, presumably hairpins. Thermodynamic parameters evaluated by analysis of the optical melting transitions assuming a two-state model and measured directly by differential scanning calorimetry agreed within experimental error. Therefore, melting behavior of the hairpins is all-or-none like. The DNA hairpin is slightly more stable than the RNA hairpin with melting enthalpy delta H0 = 41.2 +/- 3.8 kcal/mol and entropy delta S0 = 133 +/- 11 cal/K.mol (eu) compared to delta H0 = 32.0 +/- 6.0 kcal/mol and entropy delta S0 = 105 +/- 20 eu for the RNA. Gel electrophoretic analysis of these oligomers alone and in various mixtures with their DNA and RNA complementary strands was also performed. Consistent with interpretations of melting results, these experiments revealed both strands alone preferentially form intramolecular hairpin structures. In mixtures in which their complementary strands are in vast molar excess (stoichiometric ratios > 10:1), the intramolecular structures are converted to intermolecular duplexes. For the DNA and RNA strands examined, the conversion is not complete until over a 1000-fold excess of the complementary strand is added. Semiquantitative analysis of gel electrophoretograms enabled evaluations of the relative free energies of the hairpin and duplex states as a function of complementary strand concentration. With the finding that these sequences preferentially form hairpins, potential roles these structures could play in regulatory activities are considered.