Degrading Bacteria Research Articles

Screening and diversity analysis of Dibutyl phthalate degrading bacteria in agricultural soil in Chengdu, China.

Dibutyl phthalate (DBP) with teratogenicity, carcinogenesis, and mutagenesis, is a ubiquitous endocrine disruptor in the environment. The widespread usage of plastic mulch has resulted in a severe DBP pollution problem in agricultural soil. One of the most vital ways to mitigate the DBP pollution problem is to use DBP degrading bacteria to reduce the concentration of DBP in agricultural soil. DBP degrading bacteria studied in previous studies mainly come from sewage treatment plants, rivers, landfills, bioreactors, and other environmental media. At the same time, there was relatively little research on DBP degrading bacteria in agricultural soil. Therefore, using the pure culture approach, the candidate DBP degrading strains were isolated and screened from vegetable plots contaminated with plastic mulch in Dayi County, Chengdu City, Sichuan Province, China. The taxonomy of the strains was determined using the 16 sedimentation ribosomal deoxyribonucleic acid (16S rDNA) molecular technique. Furthermore, ultraviolet and visible spectrophotometry and high performance liquid chromatography (HPLC) were used to assess the degrading capability of strains. The findings showed that a total of twenty-six DBP degrading strains were screened from vegetable plots contaminated with plastic mulch in Dayi County, Chengdu City, Sichuan Province, China, and these strains belonged to two phyla: Proteobacteria and Bacillota, eight families, including Pseudomonas, Enterobacteriaceae, and Bacillaceae, as well as ten genera, such as Enterobacter, Pseudomonas, and Bacillus. One of them, the strain SWDB-7 was a potentially new species in the Enterobacter genus. The most prominent genus of the isolated strains was Enterobacter. There were significant variations in the degradation capability of different obtained DBP degrading strains. and their degradation efficiency was 14.12%-91.86%. With a total DBP removal rate of 91.86%, strain SWDB-15 had the most effective degrading capability among them. To sum up, the DBP degrading strains in vegetable plots contaminated with plastic mulch in Dayi County, Chengdu City, Sichuan Province, China are rich in diversity and capable of breaking down DBP.

Biostimulation of a novel native Bacillus strain capable of degrading gasoline

The contamination of soil with hydrocarbons is a significant ecological issue worldwide, posing a threat to the ecosystem. Therefore, it is crucial to develop environmentally friendly and effective techniques to eliminate pollutants using biological agents. This study aimed to isolate, characterize, and evaluate bacteria capable of degrading gasoline. Soil samples contaminated with gasoline were collected and diluted up to 10-10. Pure cultures were obtained by streaking dilutions of 10-7, 10-6, and 10-5 on nutrient agar. These pure cultures were then inoculated on a selective medium (Bushnell Haas minerals agar). The isolates were characterized based on their growth patterns using morphological characteristics, optical density measurement, and biochemical tests. As a result, five gasoline-degrading bacteria were identified as B. mojavensis and B. licheniformis. Two biodegradation experiments were conducted using low and high concentrations of gasoline (0.01/10 and 0.001/10 mL, respectively) over a period of 14 days. Furthermore, the bacterial strains were stimulated by adding nitrogen and phosphorus to evaluate their efficiency in degrading gasoline. The results showed that B. mojavensis has the potential to degrade gasoline more effectively than the other isolate. Additionally, the addition of nitrogen minerals enhanced the ability of this isolate to degrade gasoline. Conversely, the performance of B. licheniformis in degrading gasoline was improved with the addition of nitrogen and phosphorus. This study demonstrates the effectiveness of Gram-positive bacteria in gasoline degradation and highlights the potential of the genus B. mojavensis for in situ remediation of gasoline-contaminated soils.

Mitigating risks from atrazine drift to soybeans through foliar pre-spraying with a degrading bacterium

Herbicides play a crucial role in managing weeds in agriculture, ensuring the productivity and quality of crops. However, herbicide drift poses a significant threat to sensitive plants, necessitating the consideration of ecosystem-based solutions to address this issue. In this study, foliar pre-spraying of atrazine-degrading Paenarthrobacter sp. AT5 was proposed as a new approach to mitigate the risks associated with atrazine drift on soybeans. Exposure to atrazine reduced chlorophyll levels and disturbed the antioxidant system and metabolic processes in soybean leaves, ultimately causing leaves to turn yellow. However, by pre-spraying, strain AT5 successfully colonized the surface of soybean leaves and mitigated the harmful effects of atrazine. This was achieved by slowing down atrazine absorption, expediting its reduction (half-life decreased from 2.22 d to 0.86 d), altering its degradation pathway (enhancing hydroxylation while weakening alkylation), and enhancing the interaction within phyllosphere bacteria communities. This study introduces a new approach that is both eco-friendly and user-friendly for reducing the risks of herbicide drift to sensitive crops, hence promoting the development of mixed cropping.

Biosurfactant production by Bacillus cereus GX7 utilizing organic waste and its application in the remediation of hydrocarbon-contaminated environments.

The use of biosurfactants represents a promising technology for remediating hydrocarbon pollution in the environment. This study evaluated a highly effective biosurfactant strain-Bacillus cereus GX7's ability to produce biosurfactants from industrial and agriculture organic wastes. Bacillus cereus GX7 showed poor utilization capacity for oil soluble organic waste but effectively utilized of water- soluble organic wastes such as starch hydrolysate and wheat bran juice as carbon sources to enhance biosurfactant production. This led to significant improvements in surface tension and emulsification index. Corn steep liquor was also effective as a nitrogen source for Bacillus cereus GX7 in biosurfactant production. The biosurfactants produced by strain Bacillus cereus GX7 demonstrated a remediation effect on oily beach sand, but are slightly inferior to chemical surfactants. Inoculation with Bacillus cereus GX7 (70.36%) or its fermentation solution (94.38%) effectively enhanced the degradation efficiency of diesel oil in polluted seawater, surpassing that of indigenous degrading bacteria treatments (57.62%). Moreover, inoculation with Bacillus cereus GX7's fermentation solution notably improved the community structure by increasing the abundance of functional bacteria such as Pseudomonas and Stenotrophomonas in seawater. These findings suggest that the Bacillus cereus GX7 as a promising candidate for bioremediation of petroleum hydrocarbons.

Comparative Study of Suspended and Immobilized Bacteria Isolated from Garage Soil on Vegetable Oil Degradation

As an essential part of the ecosystem, soil helps to support life by promoting interactions between bedrock, water, air, and biota. But the growing number of oil spills has raised serious environmental issues, presenting problems similar to petroleum hydrocarbon pollution. Vegetable oils are generally thought to be safe, but because of their toxicity and persistence, they may have negative environmental impacts. Bioremediation techniques have gained popularity as a sustainable method of cleaning up hydrocarbon-contaminated locations in response to this environmental problem. This study uses immobilized microbial technology to increase the bioremediation effectiveness by examining the ability of bacteria isolated from a garage oil spill region to degrade vegetable oil. The study compares the degradation rates with naturally occurring bacteria to assess the effectiveness of the detected bacterium’s breakdown over time in both suspended and immobilized situations. The results add to our knowledge of microbial-mediated bioremediation in contaminated environments and highlight the promise of immobilized microbial technology as a workable method for reducing vegetable oil spills. After 45 days, immobilized bacteria showed a drastic reduction in hydrocarbon content compared to suspended bacteria, indicating increased efficacy. Moreover, the degradation rate of immobilized bacteria was significantly higher than that of suspended bacteria, as observed from the difference in hydrocarbon concentration between day 1 and day 45. Statistical analysis confirmed these findings, highlighting the effectiveness of immobilized bacteria in hydrocarbon degradation.

DC Electric Fields Promote Biodegradation of Waterborne Naphthalene in Biofilter Systems.

Biofiltration is a simple and low-cost method for the cleanup of contaminated water. However, the reduced availability of dissolved chemicals to surface-attached degrader bacteria may limit its efficient use at certain hydraulic loadings. When a direct current (DC) electric field is applied to an immersed packed bed, it invokes electrokinetic processes, such as electroosmotic water flow (EOF). EOF is a surface-charge-induced plug-flow-shaped movement of pore fluids. It acts at a nanometer distance above surfaces and allows the change of microscale pressure-driven flow profiles and, hence, the availability of dissolved contaminants to microbial degraders. In laboratory percolation columns, we assessed the effects of a weak DC electric field (E = 0.5 V·cm-1) on the biodegradation of waterborne naphthalene (NAH) by surface-attached Pseudomonas fluorescens LP6a. To vary NAH bioavailability, we used different NAH concentrations (C0 = 2.7, 5.1, or 7.8 × 10-5 mol·L-1) and Darcy velocities typical for biofiltration ( = 0.2-1.2 × 10-4 m·s-1). In DC-free controls, we observed higher specific degradation rates (qc) at higher NAH concentrations. The qc depended on , suggesting bioavailability restrictions depending on the hydraulic residence times. DC fields consistently increased qc and resulted in linearly increasing benefits up to 55% with rising hydraulic loadings relative to controls. We explain these biodegradation benefits by EOF-altered microscale flow profiles allowing for better NAH provision to bacteria attached to the collectors even though the EOF was calculated to be 100-800 times smaller than bulk water flow. Our data suggest that electrokinetic approaches may give rise to future technical applications that allow regulating biodegradation, for example, in response to fluctuating hydraulic loadings.

Hydrogeochemical differences drive distinct microbial community assembly and arsenic biotransformation in unconfined and confined groundwater of the geothermal system

High‑arsenic (As) groundwater in geothermal aquifers poses a serious threat to public health. Assembly processes governing groundwater microbial community related to As biotransformation are still unexplored in geothermal groundwater across different aquifers. To fill this gap, groundwater microorganisms, community assembly processes, and microbially metabolic coupling of carbon (C), nitrogen (N), phosphorus (P), sulfur (S), and arsenic (As) were investigated in unconfined and confined groundwater in the thermal reservoirs of the Guide Basin. The difference in groundwater hydrogeochemicals led to the heterogeneity of the microbial community and microbially mediated C, N, P, S, and As cycling between unconfined and confined groundwater. Higher temperature and As concentrations, low nutrient supply, and reduced conditions in confined groundwater supported stronger interspecific coexistence and environmental selection, thus promoting the proliferation of As-resistant microorganisms (ARMs) and simplifying the community assemblage. Abundant available nutrient supply and oxidizing conditions supported an increased species diversity and metabolic functionality in unconfined groundwater. S oxidizers, C fixation, and C degradation bacteria potentially contributed to the decreased As concentrations in unconfined groundwater. However, ARMs, ammonification, and anaerobic ammonia-oxidizing bacteria potentially caused As mobilization in confined groundwater. Overall, our results give a comprehensive insight into the interaction between As and microorganisms in geothermal groundwater.

Exploring the composition and function profiles of bacteria from wood- and soil-feeding termites for effective degradation of lignin-based aromatics

Lignocellulosic biomass (LCB) in the form of agricultural, forestry, and agro-industrial wastes is globally generated in large volumes every year. The chemical components of lignocellulosic biomass render them a substrate valuable for biofuel production. However, the rigid association of lignin, cellulose, and hemicellulose component of LCB forms a complex, hierarchical, and recalcitrant structure, which inhibits the solubilization of LCB resources for biofuel production. The learning from termites (wood-feeding and soil-feeding) and further application of their gut bacteria for lignin degradation and bioconversion remain unexplored or at its early stage. With reference to this scientific knowledge gap, this study seeks to highlight the culturable gut bacterial community in soil- and wood-feeding termites, namely Pericapritermes nitobei and Microcerotermes sp., respectively to design a future biorefinery and bioremediation technologies. In this study, a total of 40 and 67 bacterial isolates were indeed identified from Pericapritermes nitobei and Microcerotermes sp., respectively. The identified isolates from both termite species were actually classified into four different phyla: Actinobacteria, Proteobacteria, Firmicutes, and Bacteroidetes, where the phylum Actinobacteria dominated gut bacteria isolates identified from P. nitobei at 47.5 % while Proteobacteria were dominant in wood-feeding termite, Microcerotermes sp. at 46.27 %. At the genus level, the bacterial isolates enriched from the gut of Microcerotermes sp. belonged to 17 different genera, among which the bacterial genus Streptomyces (28 %) was most prevalent, followed by Enterobacter (11 %). Meanwhile, 9 genera were recorded for gut bacterial isolates from P. nitobei and were dominated by Streptomyces (37.5 %), followed by Acinetobacter (25 %). In general, the gut bacterial symbionts from both termites showed a congruency at the phyla level but were more diverged at a lower classification, inferring that different termite species evolved a unique repertoire of gut bacteria. Moreover, 61 % and 55 % of the gut bacterial isolates from the wood- and soil-feeding termites demonstrated a significant and multifunctional role in the hydrolysis of three lignocellulolytic substrates, including carboxymethyl cellulose, beechwood xylan, and aniline blue dye, indicating their unique functions and assistance to the host for the degradation of lignocellulose or other xenobiotic compounds from soil.

Laccase surface-display for environmental tetracycline removal: From structure to function

Facing the increasingly prominent tetracycline pollution and the resulting environmental problems, how to find environmental and efficient treatment means is one of the current research hotspots. In this study, the laccase surface-display technology for tetracycline treatment was investigated. Via study, the type of anchoring protein had a minor influence on the laccase ability, while the type of laccase showed a major impact. Bacillus subtilis spore coat protein (CotA) exhibited higher laccase activity, stability, and efficiency in degrading tetracycline than Pleurotus ostreatus laccase 6 (Lacc6). The superiority of bacterial laccase over fungal laccase was elucidated from the perspective of crystal structure. Besides, a variety of technical means were used to verify the success of surface-display. pGSA-CotA surface-displayed bacteria exhibited good tolerance to high temperature, pH, and various heavy metals. Importantly, surface-displayed bacteria showed faster degradation efficiency and better treatment effects than the intracellular expression bacteria in tetracycline degradation. This implies that surface display technology has greater potential for laccase-mediated environmental remediation. Due to the adverse impacts of tetracycline on soil enzyme activity and microorganisms, our study found that pGSA-CotA surface-displayed bacteria can alleviate tetracycline stress in soil and partially activate the soil, thereby increasing soil enzyme activity and certain nitrogen cycling genes.

Comparative assessment of microbiome and resistome of influent and effluent of sewage treatment plant and common effluent treatment plant located in Delhi, India using shotgun approach

Antimicrobial resistance (AMR) is a significant threat that demands surveillance to identify and analyze trends of the emerging antibiotic resistance genes (ARGs) and potential microbial carriers. The influent of the wastewater treatment plants (WWTPs) reflects the microbes derived from the population and effluent being the source of dissemination of potential pathogenic microbes and AMR. The present study aimed to monitor microbial communities and antibiotic resistance genes in WWTPs employing a whole metagenome shotgun sequencing approach. The samples were collected from a sewage treatment plant (STP) and a common effluent treatment plant (CETP) in Delhi, India. The results showed the influent of STP to be rich in Bifidobacterium, Bacteroides, Escherichia, Arcobacter, and Pseudomonas residents of gut microbiota and known to cause diseases in humans and animals; whereas the CETP sample was abundant in Aeromonas, Escherichia, and Shewanella known to be involved in the degradation of different compounds. Interestingly, the effluent samples from both STPs and CETP were rich in microbial diversity, comprising organic and xenobiotic compound degrading and disease-causing bacteria, indicating the effluent being the source of dissemination of concerning bacteria to the environment. The functional profile at both sites displayed similarity with an abundance of housekeeping function genes as analyzed by Clusters of Orthologous Genes (COG), KEGG Orthology (KO), and subsystem databases. Resistome profiling by MEGARes showed the dominance of ARGs corresponding to beta-lactams having relative abundance ranging from 16% to 34% in all the metagenome datasets, followed by tetracycline (8%–16%), aminoglycosides (7%–9%), multi-drug (5%–9%), and rifampin (3%–9%). Also, AMR genes oxa, ant3-DPRIME, and rpoB, which are of clinical importance were predominantly and most prevalently present in all the samples. The presence of AMR in effluents from both types of treatment plants indicates that wastewater from both sources contributes to the spread of pathogenic bacteria and resistance genes, increasing the environmental AMR burden and therefore requires tertiary treatment before discharge. This work will facilitate further research towards the identification of suitable biomarkers for monitoring antibiotic resistance.

Distinct microbial community structures formed on the biofilms of PLA and PP, influenced by physicochemical factors of sediment and polymer types in a 60-day indoor study

Microplastics (MPs) are colonized by biofilm-forming microbes. Biodegradable plastics, popular replacements for traditional plastics, still have unknown biofilm formation characteristics. We conducted a 60-day indoor experiment, where sediment was exposed to traditional MPs (polypropylene, PP), biodegradable MPs (polylactic acid, PLA), and glass beads (GLASS). The microbial communities in the MPs-biofilm were analyzed using high-throughput sequencing. Results indicated that Proteobacteria was the dominant phylum on all substrates, followed by Actinobacteria, and Firmicutes. At the genus level, the majority of microorganisms colonizing PP possessed nitrification and denitrification capabilities, while the dominant bacteria on PLA were capable of degrading lignin, cellulose and carbon metabolism. The genus Sphingomonas, a promising bacteria capable of degrading biodegradable microplastics, was particularly discovered on the PLA biofilm, meanwhile, bacterial colonization of PLA indirectly increased the potential for human transmission of pathogens. Redundancy analysis revealed that the pH and moisture significantly affected the bacterial communities. Pearson correlation heatmap indicated that the abundance of the majority of dominant bacterial genera of two MPs biofilms is negatively correlated with the physicochemical parameters of sediment (pH, moisture, TN, TP), except for salinity. The microbial communities associated with PP and PLA exhibited distinct differences caused by the combined effects of changes in physicochemical properties of sediment and different material substrates. This study provides further evidence of the significant selective features exhibited by microbial colonization on these two MPs when exposed to the same source community, offering insights into the exploration of promising bacteria for MPs degradation.

Removing multiple refractory organic pollutants in wastewater by cell bioaugmentation and genetic bioaugmentation with Rhodococcus sp. strain p52

Bioaugmentation is an appealing remediation strategy to treat refractory organic pollutants in contaminated environments. In this study, activated sludge was bioaugmented with Rhodococcus sp. strain p52 to treat synthetic wastewater containing multiple refractory organic pollutants (dibenzofuran, dibenzo-p-dioxin, and phenanthrene). Bioaugmentation of activated sludge reactors with strain p52 alleviated the adverse effects of refractory pollutants on the chemical oxygen demand and ammonia nitrogen removal capacity of the reactors and enhanced the removal of the refractory organic pollutants, especially highly refractory compound dibenzo-p-dioxin. Toxicity of the refractory pollutants to activated sludge bacteria was attenuated due to contaminant degradation by strain p52. Genetic bioaugmentation mediated by catabolic plasmid transfer from strain p52 to activated sludge bacteria and cell bioaugmentation occurred along with successful colonization and proliferation of strain p52. In addition, a potential metabolically mutualistic relationship existed between strain p52 and activated sludge bacteria for refractory pollutants degradation. Both refractory organic pollutants input and strain p52 bioaugmentation profoundly influenced the structure of the activated sludge bacterial community and drove bacterial community shifts in different directions. This study provides insights into the activities of bioaugmented bacteria and bioaugmentation technology for environmental contaminant remediation.

Green synthesis of Bio-CuS quantum dots by sulfate reducing bacteria for solid-phase photocatalytic degradation of polyethylene film

In this study, CuS quantum dots (QDs) synthesized through biological method were used as photocatalysts for the photocatalytic degradation of polyethylene (PE) plastics. Bio-CuS QDs were synthesized through a green process using sulfate reducing bacteria, while Che-CuS QDs were prepared by chemical precipitation for comparison. The crystal structure, surface morphology, microstructure and optical properties of the samples were detected by XRD, SEM, TEM and UV–Vis DRS. The green synthesis mechanism of Bio-CuS was inferred by analyzing changes in amino acid concentration and the three-dimensional fluorescence spectra of extracellular polymeric substances before and after synthesis. The photocatalytic degradation of PE films by Che-CuS and Bio-CuS was investigated. The weight loss rates of PE+Che-CuS and PE+Bio-CuS were 9.1 % and 12.8 % after 14 d irradiation, respectively, while pure PE was only 1.7 %. Furthermore, SEM, UV–Vis DRS, contact angle, TGA, GPC and FTIR were adopted to characterize the PE film. The results revealed that PE+Che-CuS and PE+Bio-CuS underwent major changes in morphology, transparency, hydrophilicity, thermal stability, molecular weight and functional groups compared with PE, with more pronounced changes observed for PE+Bio-CuS. The quenching experiments of active species showed that h+ and·OH were critical to the PE degradation. The intermediate products of PE degradation were analyzed by GC–MS, and a possible degradation pathway was proposed. In addition, the possible mechanism of photocatalytic degradation of PE films by CuS QDs was proposed. This work provides a green remediation approach to addressing the growing plastic pollution in the environment.

Refractory wastewater shapes bacterial assembly and key taxa during long-term acclimatization

Bacterial assembly and key taxa during long-term acclimatization in refractory wastewater treatment systems is of paramount importance for optimizing system performance and improving management strategies. Therefore, this study employed high-throughput sequencing, coupled with machine learning models and statistical analysis approaches, to comprehensively elucidate key features of bacterial communities and assembly processes in pesticide wastewater treatment systems. A nine-month monitoring showed substantial variation in diversity and composition of bacterial community between two interconnected biological treatment units (designated as BA and PA). Dynamics of bacterial communities in both units were similar. Moreover, water quality played crucial roles in regulating the bacterial community structure of activated sludge, which were primarily driven by deterministic patterns. Homogeneous selection contributed to 62.85 % and 64.43 % of the variations in BA and PA samples, respectively. Additionally, network analysis revealed significant modularity in bacterial compositions in both groups. Linear regression analysis identified major bacterial modules associated with metabolism and degradation functions. Notably, Module 2 in PA samples has significant positive correlations with functions related to metabolism of nucleotide, amino acid, and xenobiotics, as well as benzoate degradation. Furthermore, key taxa in ecological modules identified by Random Forest model, such as Pseudomonas, Sphingobium, and PHOS-HE28, were dominant populations with metabolism and degradation functions. Particularly, Sphingobium, appeared to be a potential multifunctional degrading bacterium, related to amino acid and xenobiotics metabolism, as well as fatty acid, valine, leucine, isoleucine, fluorobenzoate, and aminobenzoate degradation. These findings are important for developing operating strategies to maintain stable system performance during refractory wastewater treatment.

Investigating the mechanism of Bacillus amyloliquefaciens YUAD7 degrading aflatoxin B1 in alfalfa silage using isotope tracing and nuclear magnetic resonance methods

BackgroundFungal toxins are highly toxic and widely distributed, presenting a considerable threat to global agricultural development. Addressing the issue of aflatoxin B1 (AFB1) contamination in feed, it is crucial to ascertain the effectiveness and mechanisms of microbial strains in degradation.ResultsThis study used isotope tracing and nuclear magnetic resonance (NMR) to investigate the degradation products of Bacillus amyloliquefaciens YUAD7 in complex substrates. By tracing 14C34-AFB1 and utilizing NMR, ultra-performance liquid chromatography–quadrupole time-of-flight/mass spectrometry (UPLC–Q-TOF/MS) purification and identification techniques, it was confirmed that AFB1 was degraded by YUAD7 into C12H14O4, C5H12N2O2, C10H14O2, and C4H12N2O, effectively removing 99.7% of AFB1 (100 μg/kg) from alfalfa silage. YUAD7 targeted the ester bond in the vanillin lactone ring structure, the ether bond in the furan ring structure, and the unsaturated carbon–carbon double bond in the furan ring structure during AFB1 degradation, disrupting the toxic sites responsible for AFB1's carcinogenic, teratogenic, and mutagenic effects and achieving biodegradation. Moreover, B. amyloliquefaciens YUAD7 transformed AFB1 through processes like hydrogenation, enzyme modification, and the loss of the -CO group while also being associated with metabolic pathways such as alanine, aspartate, glutamate metabolism, glutathione metabolism, cysteine and methionine metabolism, and pentose and glucuronate interconversions.ConclusionsThe utilization of isotope tracing allowed for rapid identification of degradation products in complex substrates, while NMR elucidated the structures of these products. This deepens our understanding of AFB1 biodegradation mechanisms, providing technical support for the practical application of these bacteria in degradation, and new insights into studying the biological degradation mechanism. B. amyloliquefaciens YUAD7 can be used as a potential strain for degrading AFB1 in large-scale silage.Graphical

Straw Incorporation with Exogenous Degrading Bacteria (ZJW-6): An Integrated Greener Approach to Enhance Straw Degradation and Improve Rice Growth.

Rice straw is an agricultural waste, the disposal of which through open burning is an emerging challenge for ecology. Green manufacturing using straw returning provides a more avant-garde technique that is not only an effective management measure to improve soil fertility in agricultural ecosystems but also nurtures environmental stewardship by reducing waste and the carbon footprint. However, fresh straw that is returned to the field cannot be quickly decomposed, and screening microorganisms with the capacity to degrade straw and understanding their mechanism of action is an efficient approach to solve such problems. This study aimed to reveal the potential mechanism of influence exerted by exogenous degradative bacteria (ZJW-6) on the degradation of straw, growth of plants, and soil bacterial community during the process of returning rice straw to the soil. The inoculation with ZJW-6 enhanced the driving force of cellulose degradation. The acceleration of the rate of decomposition of straw releases nutrients that are easily absorbed by rice (Oryza sativa L.), providing favorable conditions for its growth and promoting its growth and development; prolongs the photosynthetic functioning period of leaves; and lays the material foundation for high yields of rice. ZJW-6 not only directly participates in cellulose degradation as degrading bacteria but also induces positive interactions between bacteria and fungi and enriches the microbial taxa that were related to straw degradation, enhancing the rate of rice straw degradation. Taken together, ZJW-6 has important biological potential and should be further studied, which will provide new insights and strategies for the appropriate treatment of rice straw. In the future, this degrading bacteria may provide a better opportunity to manage straw in an ecofriendly manner.

High acidity notably influences acid mine drainage treatment performance in constructed wetlands packed with composite organic substrates by affecting both abiotic and biotic routes

The impact of influent pH value (2.0–5.0) on remediation performance of constructed wetlands (CWs) packed with composite organic solids consisting of walnut shells, biochar and plastic filters for acid mine drainage (AMD) was evaluated in this study. Reed straw broth was supplemented to drive the microbial remediation process. Influent pH had a notable impact on both abiotic and biotic remediation performance, with very low efficacy at pH 2.0 and the best performance achieved at pH 5.0. The adsorption capacity of CW substrates for heavy metals and the growth of functional microbes for AMD treatment were restrained at high acidity. Moreover, the removal of conventional pollutants, plant growth and metal deposition in the CWs were negatively impacted by the dosing of AMD with low pH. A low pH of 2.0 resulted in a distinctive microbial community in the CWs with almost no sulfate-reducing bacteria (SRB). In other CW systems, SRB (Desulfosporosinus and Desulfobulbus) and organic degrading bacteria (Cellulomonas and Geobacter) were identified as keystone taxa to carry out AMD bioremediation synergistically in phase Ⅱ. CWs filled with composite organic substrates are promising systems for AMD treatment, but the pH of AMD should be preneutralized to ≥ 3.

Efficient biodegradation of chlorobenzene via monooxygenation pathways by Pandoraea sp. XJJ-1 with high potential for groundwater bioremediation.

Chlorobenzene (CB), extensively used in industrial processes, has emerged as a significant contaminant in soil and groundwater. The eco-friendly and cost-effective microbial remediation has been increasingly favored to address this environmental challenge. In this study, a degrading bacterium was isolated from CB-contaminated soil at a pesticide plant, identified as Pandoraea sp. XJJ-1 (CCTCC M 2021057). This strain completely degraded 100 mg·L-1 CB and showed extensive degradability across a range of pH (5.0-9.0), temperature (10-37 °C), and CB concentrations (100-600 mg·L-1). Notably, the degradation efficiency was 85.2% at 15 °C, and the strain could also degrade six other aromatic hydrocarbons, including benzene, toluene, ethylbenzene, and xylene (o-, m-, p-). The metabolic pathway of CB was inferred using ultraperformance liquid chromatography, gas chromatography-mass spectrometry, and genomic analysis. In strain XJJ-1, CB was metabolized to o-chlorophenol and 3-chloroxychol by CB monooxygenase, followed by ortho-cleavage by the action of 3-chlorocatechol 1,2-dioxygenase. Moreover, the presence of the chlorobenzene monooxygenation pathway metabolism in strain XJJ-1 is reported for the first time in Pandoraea. As a bacterium with low-temperature resistance and composite pollutant degradation capacity, strain XJJ-1 has thepotential application prospects in the in-situ bioremediation of CB-contaminated sites.

Determination of soil phenanthrene degradation through a fungal-bacterial consortium.

Fungal-bacterial consortia enhance organic pollutant removal, but the underlying mechanisms are unclear. We used stable isotope probing (SIP) to explore the mechanism of bioaugmentation involved in polycyclic aromatic hydrocarbon (PAH) biodegradation in petroleum-contaminated soil by introducing the indigenous fungal strain Aspergillus sp. LJD-29 and the bacterial strain Pseudomonas XH-1. While each strain alone increased phenanthrene (PHE) degradation, the simultaneous addition of both strains showed no significant enhancement compared to treatment with XH-1 alone. Nonetheless, the assimilation effect of microorganisms on PHE was significantly enhanced. SIP revealed a role of XH-1 in PHE degradation, while the absence of LJD-29 in 13C-DNA indicated a supporting role. The correlations between fungal abundance, degradation efficiency, and soil extracellular enzyme activity indicated that LJD-29, while not directly involved in PHE assimilation, played a crucial role in the breakdown of PHE through extracellular enzymes, facilitating the assimilation of metabolites by bacteria. This observation was substantiated by the results of metabolite analysis. Furthermore, the combination of fungus and bacterium significantly influenced the diversity of PHE degraders. Taken together, this study highlighted the synergistic effects of fungi and bacteria in PAH degradation, revealed a new fungal-bacterial bioaugmentation mechanism and diversity of PAH-degrading microorganisms, and provided insights for in situ bioremediation of PAH-contaminated soil.IMPORTANCEThis study was performed to explore the mechanism of bioaugmentation by a fungal-bacterial consortium for phenanthrene (PHE) degradation in petroleum-contaminated soil. Using the indigenous fungal strain Aspergillus sp. LJD-29 and bacterial strain Pseudomonas XH-1, we performed stable isotope probing (SIP) to trace active PHE-degrading microorganisms. While inoculation of either organism alone significantly enhanced PHE degradation, the simultaneous addition of both strains revealed complex interactions. The efficiency plateaued, highlighting the nuanced microbial interactions. SIP identified XH-1 as the primary contributor to in situ PHE degradation, in contrast to the limited role of LJD-29. Correlations between fungal abundance, degradation efficiency, and extracellular enzyme activity underscored the pivotal role of LJD-29 in enzymatically facilitating PHE breakdown and enriching bacterial assimilation. Metabolite analysis validated this synergy, unveiling distinct biodegradation mechanisms. Furthermore, this fungal-bacterial alliance significantly impacted PHE-degrading microorganism diversity. These findings advance our understanding of fungal-bacterial bioaugmentation and microorganism diversity in polycyclic aromatic hydrocarbon (PAH) degradation as well as providing insights for theoretical guidance in the in situ bioremediation of PAH-contaminated soil.

The mechanism differences between sulfadiazine degradation and antibiotic resistant bacteria inactivation by iron-based graphitic biochar and peroxydisulfate system

In this study, the activation of peroxydisulfate (PS) by K2FeO4-activation biochar (KFeB) and acid-picking K2FeO4-activation biochar (AKFeB) was investigated to reveal the mechanism differences between iron site and graphitic structure in sulfadiazine (SDZ) degradation and ARB inactivation, respectively. KFeB/PS and AKFeB/PS systems had similar degradation property towards SDZ, but only KFeB/PS system showed excellent bactericidal property. The mechanism study demonstrated that dissolved SDZ was degraded through electron transfer pathway mediated by graphitic structure, while suspended ARB was inactivated through free radicals generated by iron-activated PS, accompanied by excellent removal on antibiotic resistance genes (ARGs). The significant decrease in conjugative transfer frequency indicated the reduced horizontal gene transfer risk of ARGs after treatment with KFeB/PS system. Transcriptome data suggested that membrane protein channel disruption and adenosine triphosphate synthesis inhibition were key reasons for conjugative transfer frequency reduction. Continuous flow reactor of KFeB/PS system can efficiently remove antibiotics and ARB, implying the potential application in practical wastewater purification. In conclusion, this study provides novel insights for classified and collaborative control of antibiotics and ARB by carbon-based catalysts driven persulfate advanced oxidation technology.