Deep-water Habitats Research Articles

Newly discovered deep-water nursery and spawning habitats of the queen conch Aliger gigas in Puerto Rico

The queen conch Aliger gigas is a large marine gastropod and sustains one of the most important fisheries in the Caribbean. Overfishing of queen conch has led to shifts in the distribution and abundance of this species in some Caribbean countries; as a result, fishing effort has been redirected to deeper waters (>25 m), where fishers have largely switched from harvesting conch by snorkeling to using SCUBA. Advances in technology such as camera sleds have been used to identify, measure, and study queen conch in shallow habitats, but only sparingly in deeper habitats that may serve as refugia. To define deep-water habitat use and composition, we used a camera sled to quantify siphonal length, life stage, and environmental characteristics of the queen conch on the west coast of Puerto Rico. We conducted multiple 2 h transect surveys at 25-45 m depths during summer 2018. Queen conch densities ranged from 2.6 to ~3000 ind. ha-1, with relative abundance highest at the 27 m depth interval. A novel finding was the discovery of deep-water nurseries and aggregations of juvenile queen conch in association with deep-water spawning grounds at the 27 m depth interval. Densities in deep-water habitats rivaled those in shallower habitats and indicate that deep-water nursery and spawning habitats warrant management measures for sustainable exploitation as well as integration of these habitats into metapopulation dynamics.

Nutrient fluxes, oxygen consumption and fatty acid composition from deep-water demo- and hexactinellid sponges from New Zealand

Sponges are an important component of deep-water ecosystems enhancing eukaryotic biodiversity by hosting diverse endo- and epibiota and providing three dimensional habitats for benthic invertebrates and fishes. As holobionts they are important hosts of microorganisms which are involved in carbon and nitrogen cycling. While increasing exploration of deep-water habitats results in new sponge species being discovered, little is known about their physiology and role in nutrient fluxes. Around New Zealand (Southwest Pacific), the sponge biodiversity is particularly high, and we selected six deep-sea sponge genera (Saccocalyx, Suberites, Tedania, Halichondria/ Dendoricella, Lissodendoryx) and a member of the Sceptrulophora order for in-situ and ex-situ experiments.We investigated the biochemical composition of the sponges, measured oxygen consumption and inorganic nutrient fluxes, as well as bacterial and phospholipid-derived fatty acid (PLFA) compositions. Our aim was to assess differences in fluxes and fatty acid composition among sponges and linking their bacterial communities to nitrogen cycling processes.All sponges excreted nitrite and ammonia. Nitrate and phosphate excretion were independent of phylum affiliation (Demospongiae, Hexactinellida). Nitrate was excreted by Halichondria/ Dendoricella and Lissodendoryx, whereas Suberites, Tedania, and Sceptrulophora consumed it. Phosphate was excreted by Sceptrulophora and Halichondria/ Dendoricella and consumed by all other sponges. Oxygen consumption rates ranged from 0.17 to 3.56±0.60 mmol O2 g C d-1.The PLFA composition was very sponge-genera dependent and consisted mostly of long-chain fatty acids. Most PLFAs were sponge-specific, followed by bacteria-specific PLFAs, and others.All sponges, except for Suberites, were low-microbial abundance (LMA) sponges whose bacterial community composition was dominated by Proteobacteria, Bacteroidota, Planctomycetota, and Nitrospinota. Suberites consisted of high-microbial abundance (HMA) sponges with Proteobacteria, Chloroflexota, Acidobacteriota, and Actinobacteriota as dominant bacteria.Based on the inorganic nitrogen flux measurements, we identified three types of nitrogen cycling in the sponges: In type 1, sponges (Dendoricella spp. indet., Lissodendoryx) respired aerobically and ammonificated organic matter (OM) to ammonium, fixed N2 to ammonium, and nitrified aerobically heterotrophically produced ammonium to nitrate and nitrite. In type 2, sponges (Halichondria sp., Sceptrulophora, Suberites, Tedania) respired OM aerobically and ammonificated it to ammonium. They also reduced nitrate anaerobically to ammonium via dissimilatory nitrate reduction to ammonium. In type 3, ammonium was microbially nitrified to nitrite and afterwards to nitrate presumably by ammonium-oxidizing Bacteria and/ or Archaea.

Otolith growth chronologies reveal distinct environmental sensitivities between and within shallow- and deep-water snappers

AbstractFish growth underpins individual fitness and population-level metrics, with fluctuations linked to environmental variability. Growth chronologies derived from otolith increment analysis are a powerful proxy to understand population responses to environmental change and productivity. Yet, long-term patterns of growth and their environmental drivers are better understood for shallow-water species compared to deep-water inhabitants. Additionally, focus is largely on adults, disregarding the potential influence of juvenile growth which is critical to size- and age-at-maturity. Here, we investigate the long-term growth patterns of two commercially important snapper species separated by depth in northwestern Australia’s coastal shelf waters, the shallow-water Lutjanus sebae (70 year chronology, 1950–2020) and the deep-water Etelis boweni (41 year chronology, 1973–2013). Annually-resolved otolith growth chronologies revealed distinct environmental sensitivities within (juveniles vs adults) and among (shallow- vs deep-water habitats) species. Within species, juveniles and adults responded differently to shared environmental stimuli, highlighting the importance of understanding the impacts of environmental effects and sensitivities for different life-history stages. Across species, L. sebae exhibited highly variable growth tied to local climate signals such as sea surface temperature and rainfall, while E. boweni displayed more stable growth patterns that only responded to interannual and decadal shifts in the environment (e.g. Pacific Decadal Oscillation). Our results highlight potential vulnerabilities of shallow-water species to future environmental perturbations compared to species residing at depth, as they are likely to encounter more extreme climate variability under future oceanic conditions. This study contributes valuable insights into understanding and managing the impacts of future environmental variability on fisheries sustainability, emphasising the need for continued research across species and habitats.

First Record of Bramble Sharks, Echinorhinus brucus (Echinorhiniformes, Echinorhinidae), in the United Arab Emirates

The first record of bramble sharks (Echinorhinus brucus) in the United Arab Emirates is presented. In situ observations of multiple bramble sharks were made at depths between 460 and 720 m from two piloted submersibles and a remotely operated vessel, representing the first known observations of this species in its native deep-water habitat in Arabia and the Indian Ocean. Notably, this research expands on the documented regional distribution of E. brucus for the Gulf of Oman/Arabian Sea and extends this species’ regional records to deeper mesophotic zones. These findings underscore the need for further research to understand the ecology and distribution of this cryptic shark species, particularly given its global endangered status and the limited knowledge of its regional population dynamics.

New carnivorous sponges (Porifera: Cladorhizidae) from Western Australia, collected by a Remotely Operated Vehicle (ROV).

The last two decades have reinvigorated systematic research on predatory sponges, mainly fuelled by advances in technology that have facilitated collection in deep-water habitats. This research presents six new species of carnivorous sponges from the family Cladorhizidae Dendy, 1922 from the western continental margin of Australia. The new species are Abyssocladia johnhooperi nov. sp., Abyssocladia aurora nov. sp., Abyssocladia janusi nov. sp., Axoniderma challengeri nov. sp., Cladorhiza vanessaekins nov. sp. and Nullarbora ningalooa nov. sp.. This material was collected by ROV during expeditions FK200308 to the Ningaloo Canyons expedition off the mid-west coast near Ningaloo, and FK200126 to the Southwest Australian canyons expedition, in Western Australia. These and other expeditions by the Schmidt Ocean Institute in 2020-21 formed a campaign around Australia's deep sea and mesophotic environments, which has vastly increased our understanding of biodiversity in these habitats.

Populations of the stygobiotic amphipod Palearcticarellus pusillus (Martynov, 1930) maintain genetic connectivity between the mountain springs and the deep bottom habitats of Lake Teletskoye (Altai Mountains, Russia)

The diversity of underground fauna is often associated with the presence of karst areas, which have extensive underground cavities and connecting channels. Non-karst areas, however, make up a larger portion of the planet’ surface, and our understanding of the distribution and dispersal abilities of underground fauna in these areas currently remains limited. During a recent study of the diversity of stygobiotic crustaceans in the mountain streams of the Kurai Mountain Range (Altai, Russia), a small-sized species of crangonyctid amphipod, Palearcticarellus pusillus (Crustacea, Amphipoda, Crangonyctidae) was found in high-altitude springs. This species has been previously known only from deep-water habitats in Lake Teletskoye, and molecular genetic analysis revealed that these amphipods maintain genetic connections between the springs and bottom lake habitats. We assume that individuals of this certainly stygobiotic species fall to the bottom of the lake as a result of leaching from tectonic faults connecting these habitats and are not permanent inhabitants of the lake bottom. This hypothesis also suggests that the very small body size of these animals may be related to the narrow crevices and pores of the tectonic faults, rather than neoteny, as it has been previously suggested. The estimated divergence time calculation has also revealed that P. pusillus obviously diverged from its sister species, Palearcticarellus mikhaili from valley springs in Kurai Steppe, ~5 Ma, at the beginning of the Pliocene, possibly due to the uplifting of the Kurai Mountain Range. Subsequent speciation occurred as a result of secondary tectonic activity and changes in groundwater flow, likely during the Pleistocene, approximately 2.7–0.7 Ma. Populations that were isolated for a long time continue to live near mountain springs in the study area.

Diversity and novelty of venom peptides from Conus (Asprella) rolani revealed by analysis of its venom duct transcriptome

Conus species in the sub-genus Asprella are poorly studied because they inhabit deep-water habitats. To date, only a few peptides have been characterized from this clade. In this study, the venom duct transcriptome of a member of this clade, Conus rolani, was mined for potential conopeptides. Using a high-throughput RNA sequencing platform (Illumina) and a multiple k-mer de novo assembly, we found 103 putative conopeptide precursor amino acid sequences, including the few peptides previously reported for this species. The sequences, predominantly novel based on amino acid sequence, were diverse, comprising 36 gene superfamilies (including the “unassigned” superfamilies). As observed in other Conus species, the O1 gene superfamily was the most diverse (12 distinct sequences) but interestingly none of the sequences were found to contain the conserved amino acids associated with certain bioactivities in peptides found in piscivorous Conus species. The O2 superfamily was also highly diverse but con-ikot-ikot and an unassigned superfamily (MMSRMG) were more diverse than the rest of the superfamilies. In terms of gene expression levels, the understudied MEFRR paralog of the ancestral divergent M---L-LTVA superfamily was found to be the most highly expressed in the transcriptome, suggesting a novel role. Additionally, a conopeptide with high sequence similarity to A2 secretory group XII phospholipases is the first reported member of this phospholipase group in Conus and potentially represents a novel superfamily, expanding the catalog of known phospholipases present in cone snail venoms. The discovery of these putative conopeptides provides the first but early glimpse of the diversity and novelty of the peptides in the Asprella group and sets the stage for their functional characterization.

Depth Range Extension for the Misty Grouper Hyporthodus mystacinus Documented via Deep-Sea Landers throughout the Greater Caribbean

Misty Groupers (Hyporthodus mystacinus) are one of the largest and most geographically widespread grouper species and one of the few grouper species known to occur at depths greater than 200 m. However, aspects of their basic biology, behavior, and ecology remain poorly understood, leaving significant gaps in our ability to evaluate their functional role throughout the vertical water column, as well as our understanding of their conservation needs in a changing ocean. Through in-situ video observation obtained using deep-sea landers in both The Bahamas and Cayman Islands over multiple years, we documented Misty Grouper occurrence up to 470 m depth in the mesopelagic zone. These observations provide a new depth range extension for the species and illuminate the potential importance of deep-water habitats for large grouper species in the wider Caribbean.

Assessing Deepwater Rice Mutant Populations for Some Morpho-Physiological and Agronomic Traits

Unlike most current rice cultivars, rice produced in the deepwater habitat may live for at least a month in water depths exceeding 50 cm. In this experiment, 30 M6 populations developed by irradiation of Laksmidigha rice seeds utilizing 200 Gy dose of gamma rays were assessed based on morpho-physiological and agronomic traits. Six mutant populations exhibited noticeably longer leaves, with LD-200-1-1-2-6 being the only mutant population to have noticeably more grain weight/hill than the parent. But none of the mutant populations had significantly wider leaf breadth at any of the three points of the flag leaf and average as well. Six mutant populations LD-200-1-3-3-3, LD-200-1-3-3-4, LD-200-1-3-3-5, LD-200-1-3-2-1, LD-200-1-1-2-1 and LD-200-1-1-2-6 produced significantly higher grain yield/hill which also had significantly longer panicle lengths, internode lengths and heavier 1000-grain weight than the parent. It was discovered through a correlation analysis that grain weight/hill was positively and significantly connected with panicle length and 1000-grain weight, whereas its association with internode distance was positively but not significantly correlated. But the correlation of internode distance with 1000-grain weight was significantly positive. The six mutant populations that significantly increased grain yield/hill compared to the parent also had higher levels of total chlorophyll and chlorophyll "a" in their flag leaves. In anatomical studies of roots, it was found that all the 21 cross sections showed damaged cortex with different degrees except LD-200-1-3-3-7 and LD-200-1-1-2-5. Even the parent grown in Chamber-1 showed minimum cortex damage. Also, the grain yield of these two mutant populations did not differ significantly from the parent although chlorophyll “a” and total chlorophyll contents were much higher.

Community structure, environmental conditions and anthropogenic pressure on the habitat of the European endemic aquatic plant Luronium natans (L.) Raf.

Luronium natans (L.) Raf. is a European endemic species and is becoming increasingly rare and endangered in most countries. This study aimed to compare the community structure and environmental conditions of shallow and deep-water habitats of Luronium, and related anthropogenic influences. A total of 21 Luronium lake habitats were surveyed at Pomerania Lakeland (NW Poland). Luronium occurs mainly with other isoetids, as well as bryophytes, specifically Sphagnum denticulatum. It can also be found in oligotrophic lakes at a depth of 1.0 ± 0.6 m and in water with a large pH range (4.52 – 8.76), as well having a low conductivity (38.3 ± 20.9 µS cm−1; 19.0 – 106.1) and calcium concentration (3.9 ± 2.4 mg dm−3; 1.6 – 11,7).The largest Luronium cover occurs at a depth of 1.5 m (44.8 ± 35.3%), but occasionally as deep as 3.5 m. In the depth gradient, the structure of underwater vegetation and environmental conditions exhibit obvious changes, which presents a clear distinction between shallow and deep-water habitats of Luronium. The differences mainly pertain to the abundances of Isoëtes lacustris and Elodea canadensis in the community, as well as environmental factors, such as water calcium, nitrogen and phosphorus concentrations, PAR, conductivity, and water color.Compared to other isoetids, Luronium usually occurs in habitats with intermediate features, which are characterized by values between the typical, but deep-water, Isoëtes and shallow water Lobelia and Littorella. However, Luronium clearly prefers waters with higher temperatures (23.8 ± 2.7 °C), which are thus less oxygenated (96.6 ± 20.0%). In terms of pH, conductivity, and calcium concentration, Luronium occurs in waters having slightly lower values compared to other isoetids. Therefore, Luronium is a species that significantly expands the diversity of habitat number 3110 in the Natura 2000 network. Therefore, it can be considered as an indicator species of lobelia lakes.An increased anthropogenic pressure primarily results in an increased water conductivity and a decreased water transparency. Consequently, Luronium increasingly inhabits shallower waters that are more oxygenated. Moreover, Luronium abundance is decreasing, while the abundances of species comprising underwater communities are also decreasing, e.g., S. denticulatum and I. lacustris, with a concurrent increase in Myriophyllum alterniflorum and E. canadensis cover.

Patterns in distribution and density of larval lampreys in the main‐stem Columbia River, Washington–Oregon

AbstractObjectiveThis study compiled data sets from multiple research efforts from 2010 to 2018 to describe patterns in the presence and density of larval lampreys in deep water habitats across 430 river kilometers of the lower and middle main‐stem Columbia River.MethodsWe used logistic regression to evaluate the influence of landscape‐level factors on Pacific Lamprey Enthosphenus tridentatus and Lampetra spp. presence. Additionally, we used N‐mixture models to estimate larval lamprey densities in six river mouths in the spring and fall of multiple years.ResultAt the landscape‐level, the models suggested that the probability of presence for both Pacific Lampreys and Lampetra spp. decreased with increasing distance from the ocean, distance from the closest upstream tributary river mouth, and distance from the nearest main‐stem riverbank. The probability of presence also varied by upstream tributary river mouth. The probability of larval presence in river mouths was an order of magnitude greater than in reservoir pools. Evaluating river mouth habitats, larval lamprey densities varied seasonally, annually, and among river mouths, ranging from 0.04 to 9.63 larvae/m2. Results generally suggested broader distributions and higher densities within river mouths during spring when flows were high compared to the fall when flows were lower, although not in all river mouths or across all years. Larval densities increased in the Wind and Klickitat rivers (the most consistently examined tributary river mouths) over the study period.ConclusionOur findings suggest that the main‐stem Columbia River supports larval lamprey rearing year‐round. Probability of presence was highest and variable among river mouths, suggesting the importance of some river mouths as rearing habitats. Understanding shifts (seasonal, annual, and those as result of changes in environmental conditions) in lamprey presence and density could inform how specific management actions (e.g., dewatering for in‐river work) and their timing could affect larval lampreys in rivers.

Peculiarities of Early Ontogeny of Dwarf Forms of Arctic Charr Salvelinus alpinus Сomplex (Salmonidae) from Lakes Tokko and Bol’shoe Leprindo (Transbaikalia). 1. Pure Forms

The results of the study of growth, ossification sequence and peculiarities of the development of skeletal elements, body proportions and meristic characters of laboratory-reared larvae and fry of two dwarf forms of Arctic charr Salvelinus alpinus сomplex spawning at the shore slope (Lake Tokko) and in the profundal zone (Lake Bol’shoe Leprindo) (Transbaikalia) are presented. Charr from Lake Bol’shoe Leprindo demonstrated slower rates of growth and morphogenesis, retardation of the ossification of their predorsal bones series with its displacement from larval to juvenile period of the ontogeny, but the acceleration of the development of the vertebral column. High mortality of pre-larvae of charr from this lake connected with the transfer to exogenous feeding was observed. For the first time the problem of the reorganization of early ontogeny of charr of the genus Salvelinus in connection with the colonization of deepwater habitat is discussed. In larvae of charr from Lake Tokko, the ossification of vertebral centra was often accompanied by the formation of anomalous bony structures in the notochord. The phenomenon of the penetration of skeletogenic cells into the notochord, which has been described in hybrids of sympatric charr forms, was found in a pure charr form for the first time. The development of characteristic morphological features of the two charr forms in the ontogeny was traced. Differences in body proportions between their fry corresponding to those between adult fish were revealed.

Dinoflagellate cyst distribution over the past 9 kyrs BP from offshore east Tasmania, southeast Australia

Southeastern Australia’s marine waters are notably warming, surpassing global averages. This region has emerged as a strategic location for researching planktic microfossils, particularly dinoflagellate cysts, in modern and Late Quaternary sediments, offering crucial insights into the biophysical properties of mid-latitude waters. This study examined cyst distribution in marine sediment cores near Maria Island, Tasmania, southeastern Australia, up to 9000 years before present (kyrs BP). Dominant cysts included Protoceratium reticulatum, Protoperidinium spp. (P. avellana, P. conicum, P. oblongum, P. subinerme, P. shanghaiense), and Spiniferites spp. (S. bulloideus, S. hyperacanthus, S. membranaceus, S. mirabilis, S. pachydermus, and S. ramosus). Inshore, Spiniferites spp. constituted a higher proportion (up to 61%), while offshore was dominated by P. reticulatum (up to 80%). Impagidinium spp. and Nematosphaeropsis labyrinthus were exclusively found offshore and displayed increased abundance from ∼6 kyrs BP, suggesting a shift from a shallow to a deep-water habitat. Alexandrium tamarense species complex cysts were present over 140 years inshore and approaching 9 kyrs BP offshore, indicating a longstanding endemic presence. Gymnodinium catenatum cysts were detected exclusively inshore from ∼50 years ago, indicating a relatively recent bloom phenomenon. The East Australian Current’s limited southward reach is suggested by the absence of the warm-water cyst-producing taxon Lingulodinium polyedra. Similarly, the non-detection of the cold-water species Spiniferites antarctica and Impagidinium pallidum reflects Subtropical Front boundaries against subantarctic incursions from the south. In contrast to coccolithophores in the same core, no noticeable shift from cold to warm-water dinoflagellate cyst species was observed. This documentation of dinoflagellate cysts aids in predicting environmental impacts on local communities and beyond.

Forensic Wetland and Deepwater Habitat Mapping for Setting Pre-development Conditions

Mapping wetlands and deepwater habitats prior to modern settlement is difficult due to the difficulty of obtaining sufficient, spatially explicit data on conditions prior to the middle of the 20th century. We overcame this barrier by using Public Land Survey System data and other ancillary historical data to map wetlands and deepwater habitats in the 1850s in the mainland portion of St. Lucie County, Florida. Using just the Public Land Survey System data, a first draft map indicated there was 754 km2 of wetlands and deepwater habitats covering 52% of the study area. After two iterations using other ancillary historical data, a third and final draft map indicated there was 1,222 km2 of wetlands and deepwater habitats covering 84% of the study area, and overall increase of 62%. These results show that PLSS data can be used to map wetlands and deepwater habitats prior to modern settlement, but the use of other ancillary historical data can make maps more accurate and trustworthy. The outcome is a first-of-its-kind map of wetlands and deepwater habitats in the mainland portion of St. Lucie County, which is now representing baseline conditions in ongoing projects seeking to both quantify and mitigate for widespread land use-land cover change.

Factors influencing the biomass of large-bodied parrotfish species in the absence of fishing on coral reefs in Florida, USA.

Parrotfishes are a functionally critical component of Caribbean reef fish assemblages, with large-bodied parrotfish species exerting particularly important top-down control on macroalgae. Despite their importance, low biomasses of large-bodied parrotfishes on many reefs hamper our ability to study and understand their ecology. Florida reefs, where most parrotfish fishing has been illegal since 1992, present a unique opportunity to explore covariates of their distribution. Using boosted regression tree models and 23 covariates, this study identified the major predictors of four species of Atlantic large-bodied parrotfishes. Maximum hard substrate relief, the area of the surrounding reef, and the availability of seagrass habitat were each positively related to parrotfish presence. Strong positive relationships between parrotfish presence and biomass and the biomass of other parrotfishes on a reef suggest that all four species responded to a similar subset of environmental conditions. However, relationships between parrotfish presence and biomass and depth, habitat type, coral cover, and the proximity of a reef to deepwater habitats differed among species, highlighting distinct habitat preferences. These results can improve managers' ability to target important biophysical correlates of large-bodied parrotfishes with appropriate management interventions and identify areas for protection.

Invasive lionfish dispersal between shallow- and deep-water habitats within coastal Floridian waters

Invasive lionfish dispersal between shallow- and deep-water habitats within coastal Floridian waters

Suitability of saltmarsh creeks as release locations for stocked Mulloway (Argyrosomus japonicus)

Enhancing local marine fish population through stocking programs is widely undertaken around the world. The family Sciaenidae is particularly well represented in marine stocking programs where they are released to enhance both commercial and recreational fisheries. In Australia, a stocking program of the sciaenid Mulloway (Argyrosomus japonicus) is currently underway with fingerlings being released into deep water habitat within estuaries. However, many estuaries also contain fringing saltmarsh and mangrove creeks which may provide resource-rich release habitat locations. To examine the suitability of marsh creeks as stocking sites, we used acoustic telemetry and monitored the habitat use and movement of 30 hatchery reared fish, released into wetlands of the Hunter River estuary. After initially rapidly dispersing the region covered by the array due to high salinities, some fish returned when physicochemical conditions improved. Despite being detected within the array almost daily for four months, none of the returned fish ever re-entered the marsh creeks. This study confirms releases of juvenile Mulloway should continue to focus on deeper waters which appears to be provide nursery habitat for this species. More broadly, this shows stocked fish will seek out better resourced habitats, and an understanding of these requirements which informs release strategies that place fish as close to these habitats as logistically possible would optimise stocking outcomes.

Shark mandible evolution reveals patterns of trophic and habitat-mediated diversification

Environmental controls of species diversity represent a central research focus in evolutionary biology. In the marine realm, sharks are widely distributed, occupying mainly higher trophic levels and varied dietary preferences, mirrored by several morphological traits and behaviours. Recent comparative phylogenetic studies revealed that sharks present a fairly uneven diversification across habitats, from reefs to deep-water. We show preliminary evidence that morphological diversification (disparity) in the feeding system (mandibles) follows these patterns, and we tested hypotheses linking these patterns to morphological specialisation. We conducted a 3D geometric morphometric analysis and phylogenetic comparative methods on 145 specimens representing 90 extant shark species using computed tomography models. We explored how rates of morphological evolution in the jaw correlate with habitat, size, diet, trophic level, and taxonomic order. Our findings show a relationship between disparity and environment, with higher rates of morphological evolution in reef and deep-water habitats. Deep-water species display highly divergent morphologies compared to other sharks. Strikingly, evolutionary rates of jaw disparity are associated with diversification in deep water, but not in reefs. The environmental heterogeneity of the offshore water column exposes the importance of this parameter as a driver of diversification at least in the early part of clade history.

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.

Vulnerability to climate change of managed stocks in the California Current large marine ecosystem

IntroductionUnderstanding how abundance, productivity and distribution of individual species may respond to climate change is a critical first step towards anticipating alterations in marine ecosystem structure and function, as well as developing strategies to adapt to the full range of potential changes.MethodsThis study applies the NOAA (National Oceanic and Atmospheric Administration) Fisheries Climate Vulnerability Assessment method to 64 federally-managed species in the California Current Large Marine Ecosystem to assess their vulnerability to climate change, where vulnerability is a function of a species’ exposure to environmental change and its biological sensitivity to a set of environmental conditions, which includes components of its resiliency and adaptive capacity to respond to these new conditions.ResultsOverall, two-thirds of the species were judged to have Moderate or greater vulnerability to climate change, and only one species was anticipated to have a positive response. Species classified as Highly or Very Highly vulnerable share one or more characteristics including: 1) having complex life histories that utilize a wide range of freshwater and marine habitats; 2) having habitat specialization, particularly for areas that are likely to experience increased hypoxia; 3) having long lifespans and low population growth rates; and/or 4) being of high commercial value combined with impacts from non-climate stressors such as anthropogenic habitat degradation. Species with Low or Moderate vulnerability are either habitat generalists, occupy deep-water habitats or are highly mobile and likely to shift their ranges.DiscussionAs climate-related changes intensify, this work provides key information for both scientists and managers as they address the long-term sustainability of fisheries in the region. This information can inform near-term advice for prioritizing species-level data collection and research on climate impacts, help managers to determine when and where a precautionary approach might be warranted, in harvest or other management decisions, and help identify habitats or life history stages that might be especially effective to protect or restore.