e20611 Background: Predicting immunotherapy response in advanced non-small cell lung cancer (NSCLC) through non-invasive means could be a groundbreaking advancement. Deep features extracted from medical images by deep Convolutional Neural Networks (CNNs) along with radiomics have demonstrated promising results in different oncologic diseases. However, the method for extracting these deep features influences the predictive capabilities of the model. Methods: A retrospective analysis of a multicenter study was conducted in advanced NSCLC patients with high PD-L1 expression with the aim of developing an imaging features-based model for the prediction of best overall response (BOR) to a checkpoint inhibitor immunotherapy. All visible lung lesions, beyond RECIST 1.1, were manually segmented in baseline CT scans. Radiomics features were extracted at lesion-level, and various preprocessing methods and CNN architectures were tested for deep features extraction. Radiomics and deep features were harmonized using ComBat methodology. A distinctive feature signature was created for each patient by calculating the mean across all lesions. Using this data, machine learning models were trained to predict treatment response, specifically distinguishing between complete response (CR) and partial response (PR) from stable disease (SD) and progressive disease (PD). The study compared the performance of different deep features extraction methods and assessed shapley additive explanations (SHAP) values of radiomics for interpretability. Results: In the cohort of 116 patients (mean age: 67, 93% ever-smokers, 73% male), 1024 to 5475 quantitative imaging features per lesion were extracted. Among these patients, 67 patients were CR+PR, and 49 were SD+PD. The top-performing predictive model, trained with radiomics and deep features from a deep convolutional autoencoder, achieved an average AUC of 85%. SHAP values showed that impactful radiomics features were correlated with intensity changes in adjacent pixels describing the tumor heterogeneity, along with shape features potentially associated with malignancy. Ultimately, combining both features demonstrated statistical significance, leading to a performance improvement of ~2-5% compared to models exclusively using deep features. Conclusions: Diverse techniques for extracting deep features were evaluated, revealing autoencoder training as the most effective strategy for predicting immunotherapy response. Consequently, the findings suggest that employing deep learning to extract imaging features from baseline CT scans, combined with radiomics, represents a promising non-invasive approach for the predicting immunotherapy outcomes in advanced NSCLC patients.
Read full abstract