Environmental reconstruction can benefit from the interpretation of the postmortem history of shell remains. The molluscan death assemblages obtained from grab samples at forty-nine sites in the Manzala lagoon, the largest lagoon in the Nile Delta, were analyzed to infer the taphonomic alteration. The preservation of shells at each site has been semi-quantitatively ranked based on the taphonomic features formed by encrustation, bioerosion, abrasion, dissolution, precipitation, fragmentation, discoloration, and loss of sheen (low, moderate, high). A significant difference has been observed between sites of low and high environmental stress. Water depth and substrate type (hydrodynamics) correlate significantly to the percent number of altered shells. The southern parts of the lagoon, which are characterized by lower water energy and higher rates of sedimentation, are highly polluted by heavy metals (Cd, Pb, Zn) and organic pollutants. The southern parts receive much sediment from the agricultural drains, which increases burial of shelly material and decreases their time on the TAZ. The northern parts of the lagoon have slower rates of sedimentation, so that the molluscan shells remain longer at the sediment-water interface (Taphonomic Active zone; TAZ), where fragmentation is enhanced by winnowing under higher water-energy. The long residence in the TAZ also favored both bioerosion (Trypanites and Oichnus) and encrustation by bryozoan colonies, polychaetes, and oysters. Therefore, the taphonomic processes have the potential to cause severe damage and taphonomic loss of shell materials. Chemical dissolution and precipitation of shell remains may be related to acidic pore water. Moreover, high alkalinities in the southern polluted parts may also reduce the dissolution in contrast to the acidic water in the northern parts of the lagoon.
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