The seismic safety of arch dams has long been a focal point of research. Due to the complexity of modeling and computation, analyzing the seismic response of arch dams using traditional finite element methods requires a considerable amount of time. In the event of a sudden earthquake, it is challenging to quickly obtain stress analysis results or conduct a safety assessment. To address these issues, a rapid and automated analysis procedure is proposed in this paper, providing seismic response of arch dams within hours after an earthquake. The procedure includes a pre-processing program, a computing program EACD-3D-2008, and a post-processing program, achieving a fully automated process from generating non-uniform earthquakes to analyzing dam dynamic responses and visualizing computation results. As a case study, the 294.5 m high Xiaowan arch dam in southwest China is analyzed, which is equipped with strong motion instruments that have recorded several small earthquakes. The case study revealed that accounting for the non-uniformity of the earthquake significantly improves simulation results, with maximum principal stresses typically occurring near the dam-foundation rock interface. Additionally, the procedure effectively compensates for missing data, allowing for the successful supplementation of the missing acceleration records. For stronger earthquakes, high-stress regions are clearly displayed in the result visualization, providing an effective reference for safety assessment. The case study validated the accuracy and wide applicability of the procedure, demonstrating its potential to offer valuable insights for similar analyses in various engineering projects.