The D-brane superpotential is very important in the low energy effective theory. As the generating function of all disk instantons from the worldsheet point of view, it plays a crucial role in deriving some important properties of the compact Calabi–Yau manifolds. By using the generalized GKZ hypergeometric system, we will calculate the D-brane superpotentials of two non-Fermat type compact Calabi–Yau hypersurfaces in toric varieties, respectively. Then according to the mirror symmetry, we obtain the A-model superpotentials and the Ooguri–Vafa invariants for the mirror Calabi–Yau manifolds.
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