Major Nutrient Cycles Research Articles

Optimum planting density of Amorpha fruticosa promotes the recovery of understory vegetation and the arbuscular mycorrhizal fungal community in plantations in arid coal mining areas

AbstractEstablishment of plantations may be a useful means of vegetation reconstruction in coal mining areas, especially in fragile environments. However, the influence of shrub planting on the relationship between understory vegetation and soil microorganisms remains poorly understood. Here, we describe a field experiment in which the relationships between understory vegetation and soil microorganisms under different planting densities of Amorpha fruticosa L. (A. fruticosa) were investigated. Compared with areas allowed to recover naturally, shrub planting changed the community and increased the biomass of understory vegetation and soil microbes, especially of arbuscular mycorrhizal fungi (AMF). Planting density was also a key factor that influenced understory vegetation and the soil AMF community and biomass. The maximum diversity of understory vegetation and the AMF community occurred at an intermediate density of introduced shrubs, which was considered to be the optimum density of A. fruticosa. The major soil nutrient cycles that influence understory vegetation and the AMF community were also investigated. An optimum density of introduced shrubs was important in the ecological reconstruction of vegetation in the coal mining area. There may also have been an optimum relationship between the understory vegetation and soil microorganisms especially with AMF in the experimental conditions.

Lipid biomarkers for algal resistance to viral infection in the ocean

Marine viruses play a key role in regulating phytoplankton populations, greatly affecting the biogeochemical cycling of major nutrients in the ocean. Resistance to viral infection has been reported for various phytoplankton species under laboratory conditions. Nevertheless, the occurrence of resistant cells in natural populations is underexplored due to the lack of sensitive tools to detect these rare phenotypes. Consequently, our current understanding of the ecological importance of resistance and its underlying mechanisms is limited. Here, we sought to identify lipid biomarkers for the resistance of the bloom-forming alga Emiliania huxleyi to its specific virus, E. huxleyi virus (EhV). By applying an untargeted lipidomics approach, we identified a group of glycosphingolipid (GSL) biomarkers that characterize resistant E. huxleyi strains and were thus termed resistance-specific GSLs (resGSLs). Further, we detected these lipid biomarkers in E. huxleyi isolates collected from induced E. huxleyi blooms and in samples collected during an open-ocean E. huxleyi bloom, indicating that resistant cells predominantly occur during the demise phase of the bloom. Last, we show that the GSL composition of E. huxleyi cultures that recover following infection and gain resistance to the virus resembles that of resistant strains. These findings highlight the metabolic plasticity and coevolution of the GSL biosynthetic pathway and underscore its central part in this host-virus arms race.

Pesticide contamination in agro-ecosystems: toxicity, impacts, and bio-based management strategies.

Continuous rise in application of pesticides in the agro-ecosystems in order to ensure food supply to the ever-growing population is of greater concern to the human health and the environment. Once entered into the agro-ecosystem, the fate and transport of pesticides is determined largely by the nature of pesticides and the soil attributes, in addition to the soil-inhabiting microbes, fauna, and flora. Changes in the soil microbiological actions, soil properties, and enzymatic activities resulting from pesticide applications are the important factors substantially affecting the soil productivity. Disturbances in the microbial community composition may lead to the considerable perturbations in cycling of major nutrients, metals, and subsequent uptake by plants. Indiscriminate applications are linked with the accumulation of pesticides in plant-based foods, feeds, and animal products. Furthermore, rapid increase in the application of pesticides having long half-life has also been reported to contaminate the nearby aquatic environments and accumulation in the plants, animals, and microbes surviving there. To circumvent the negative consequences of pesticide application, multitude of techniques falling in physical, chemical, and biological categories are presented by different investigators. In the present study, important findings pertaining to the pesticide contamination in cultivated agricultural soils; toxicity on soil microbes, plants, invertebrates, and vertebrates; effects on soil characteristics; and alleviation of toxicity by bio-based management approaches have been thoroughly reviewed. With the help of bibliometric analysis, thematic evolution and research trends on the bioremediation of pesticides in the agro-ecosystems have also been highlighted.

Portable, In-Situ Determination of Soil Nutrients

The sustainable future of our world depends fundamentally on soil fertility and the fine balance between soil nutrients and the physical soil environment. In order to feed 7 billion people, humans have more than doubled global land-based cycling of nitrogen (N) and greatly influenced cycles of other major nutrients (e.g. carbon (C), phosphorus (P), potassium (K) and Sulphur (S)). As a consequence, they are now out of balance, causing major environmental, health and economic problems. Insufficient access to nutrients limits food production and contributes to land degradation, while finite P reserves represent a potential risk for future global food security, requiring prudent use.These issues warrant effective soil management strategies across different spatial and temporal scales. Ultimately, this depends on how accurately we can measure nutrient levels in soils over a large area in real-time with a high spatial and temporal resolution that is economically feasible.In the last several years, we are focusing our efforts on modification and adaptation of Ion Selective Electrodes (ISEs) that hold great promise for in situ analysis of plant nutrients. Unfortunately, relatively poor precision and robustness as well as requirements for pre- and post measurement handling prohibit their reliable use in the field by non-trained personnel (e.g. farmers) which is our ultimate goal.We will herein describe and discuss our efforts on the development of significantly simplified sensor substrates, measuring protocols, and integration with statistical methods aimed at improvement of precision. Moreover, we will demonstrate recent data obtained using our newly developed portable device that allows in situ determination of up to 16 analytes enhanced with the wireless data transmission capability.

Nitrogen Flow in Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Is Altered by Cyanophage Infection.

Viruses can significantly influence cyanobacteria population dynamics and activity, and through this the biogeochemical cycling of major nutrients. However, surprisingly little attention has been given to understand how viral infections alter the ability of diazotrophic cyanobacteria for atmospheric nitrogen fixation and its release to the environment. This study addressed the importance of cyanophages for net 15N2 assimilation rate, expression of nitrogenase reductase gene (nifH) and changes in nitrogen enrichment (15N/14N) in the diazotrophic cyanobacterium Aphanizomenon flos-aquae during infection by the cyanophage vB_AphaS-CL131. We found that while the growth of A. flos-aquae was inhibited by cyanophage addition (decreased from 0.02 h–1 to 0.002 h–1), there were no significant differences in nitrogen fixation rates (control: 22.7 × 10–7 nmol N heterocyte–1; infected: 23.9 × 10–7 nmol N heterocyte–1) and nifH expression level (control: 0.6–1.6 transcripts heterocyte–1; infected: 0.7–1.1 transcripts heterocyte–1) between the infected and control A. flos-aquae cultures. This implies that cyanophage genome replication and progeny production within the vegetative cells does not interfere with the N2 fixation reactions in the heterocytes of these cyanobacteria. However, higher 15N enrichment at the poles of heterocytes of the infected A. flos-aquae, revealed by NanoSIMS analysis indicates the accumulation of fixed nitrogen in response to cyanophage addition. This suggests reduced nitrogen transport to vegetative cells and the alterations in the flow of fixed nitrogen within the filaments. In addition, we found that cyanophage lysis resulted in a substantial release of ammonium into culture medium. Cyanophage infection seems to substantially redirect N flow from cyanobacterial biomass to the production of N storage compounds and N release.

Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant.

This study investigated the diversity, structure and nutrient pathways of the root-associated bacterial endophytes of maize plant cultivated using different fertilizers to verify the claim that inorganic fertilizers have some toxic effects on plant microbiome and not are ecofriendly. Whole DNA was extracted from the roots of maize plants cultivated with organic fertilizer, inorganic fertilizer and maize planted without any fertilizer at different planting sites in an experimental field and sequenced using shotgun metagenomics. Our results using the Subsystem database revealed a total of 28 phyla and different nutrient pathways in all the samples. The major phyla observed were Firmicutes, Bacteroidetes, Actinobacteria, Proteobacteria, Acidobacteria, Chloroflexi, Verrucomicrobia, Tenericutes, Planctomycetes, Cyanobacteria, and Chlorobi. Bacteroidetes dominated maize from organic fertilizer sites, Firmicutes dominated the no fertilizers site while Proteobacteria dominated Inorganic fertilizer. The diversity analysis showed that the abundance of endophytic bacteria in all the sites is in the order organic fertilizer (FK) > no fertilizer (CK) > inorganic fertilizer (NK). Furthermore, the major nutrient cycling pathways identified are linked with nitrogen and phosphorus metabolism which were higher in FK samples. Going by the results obtained, this study suggests that organic fertilizer could be a boost to sustainable agricultural practices and should be encouraged. Also, a lot of novel endophytic bacteria groups were identified in maize. Mapping out strategies to isolate and purify this novel endophytic bacteria could help in promoting sustainable agriculture alongside biotechnological applications in future.

Changing Biogeochemistry of the Southern Ocean and Its Ecosystem Implications

The Southern Ocean plays a critical role in regulating global climate as a major sink for atmospheric carbon dioxide (CO2), and in global ocean biogeochemistry by supplying nutrients to the global thermocline, thereby influencing global primary production and carbon export. Biogeochemical processes within the Southern Ocean regulate regional primary production and biological carbon uptake, primarily through iron supply, and support ecosystem functioning over a range of spatial and temporal scales. Here we assimilate existing knowledge and present new data to examine the biogeochemical cycles of iron, carbon and major nutrients, their key drivers and their responses to, and roles in, contemporary climate and environmental change. Projected increases in iron supply, coupled with increases in light availability to phytoplankton through increased near-surface stratification and longer ice-free periods, are very likely to increase primary production and carbon export around Antarctica. Biological carbon uptake is likely to increase for the Southern Ocean as a whole, whilst there is greater uncertainty around projections of primary production in the Sub-Antarctic and basin-wide changes in phytoplankton species composition, as well as their biogeochemical consequences. Phytoplankton, zooplankton, higher trophic level organisms and microbial communities are strongly influenced by Southern Ocean biogeochemistry, in particular through nutrient supply and ocean acidification. In turn, these organisms exert important controls on biogeochemistry through carbon storage and export, nutrient recycling and redistribution, and benthic-pelagic coupling. The key processes described in this paper are summarised in the graphical abstract. Climate-mediated changes in Southern Ocean biogeochemistry over the coming decades are very likely to impact primary production, sea-air CO2 exchange and ecosystem functioning within and beyond this vast and critically important ocean region.

Characterizing the microbiomes of Antarctic sponges: a functional metagenomic approach

Relatively little is known about the role of sponge microbiomes in the Antarctic marine environment, where sponges may dominate the benthic landscape. Specifically, we understand little about how taxonomic and functional diversity contributes to the symbiotic lifestyle and aids in nutrient cycling. Here we use functional metagenomics to investigate the community composition and metabolic potential of microbiomes from two abundant Antarctic sponges, Leucetta antarctica and Myxilla sp. Genomic and taxonomic analyses show that both sponges harbor a distinct microbial community with high fungal abundance, which differs from the surrounding seawater. Functional analyses reveal both sponge-associated microbial communities are enriched in functions related to the symbiotic lifestyle (e.g., CRISPR system, Eukaryotic-like proteins, and transposases), and in functions important for nutrient cycling. Both sponge microbiomes possessed genes necessary to perform processes important to nitrogen cycling (i.e., ammonia oxidation, nitrite oxidation, and denitrification), and carbon fixation. The latter indicates that Antarctic sponge microorganisms prefer light-independent pathways for CO2 fixation mediated by chemoautotrophic microorganisms. Together, these results show how the unique metabolic potential of two Antarctic sponge microbiomes help these sponge holobionts survive in these inhospitable environments, and contribute to major nutrient cycles of these ecosystems.

Biochar and manure addition influenced soil microbial community structure and enzymatic activities at eroded and depositional landscape positions

AbstractBiochar and manure application can modify soil microbial community structure and enhance biochemical activities. However, the studies about the influence of biochar and manure on the microbial communities on different geomorphological landforms (depositional and eroded landscapes) are scarce. In this study, we investigated the responses of soil biochemical activities and microbial communities to the addition of pinewood biochar, dairy manure (DM), and the dairy manure and pinewood biochar mixture (DMP) at a rate of 10 Mg ha−1, respectively, in comparison with control (CNT) at eroded and depositional landscape positions over 5 years. Data showed that the DMP treatment significantly increased cold‐water‐soluble organic carbon and hot‐water‐soluble organic carbon at the depositional landscape than CNT soils. Application of DMP increased total phospholipid fatty acid (PLFA) and bacterial PLFA by 31% and 20% compared with the CNT at the depositional landscape, respectively. At eroded landscape, total PLFAs and total bacterial PLFAs biomass concentrations were found 39% and 90% higher with DM than CNT soils. The addition of DM and DMP increased the activities of enzymes that are involved in the major nutrient cycling at depositional and eroded landscapes. At the phylum level, the proportion of Bacteroidetes was found lower in DMP, but the proportion of phylum Proteobacteria and Acidobacteria were increased. In conclusion, our study revealed that DMP influenced the labile nutrient pool, altered the microbial community structure, and increased bacterial composition and enzymatic activities at both the landscape positions.

Functional capabilities of bacterial biofilms on gold particles.

Gold particles contain gold and other toxic, heavy metals, making them 'extreme' geochemical microenvironments. To date, the functional capabilities of bacterial biofilms to deal with these conditions have been inferred from taxonomic analyses. The aims of this study are to evaluate the functional capabilities of bacterial communities on gold particles from six key locations using GeoChip 5.0 and to link functional and taxonomic data. Biofilm communities displayed a wide range of functional capabilities, with up to 53 505 gene probes detected. The capability of bacterial communities to (re)cycle carbon, nitrogen, and sulphur were detected. The cycling of major nutrients is important for maintaining the biofilm community as well as enabling the biogeochemical cycling and mobilisation of heavy and noble metals. Additionally, a multitude of stress- and heavy metal resistance capabilities were also detected, most notably from the α/β/γ-Proteobacteria and Actinobacteria. The multi-copper-oxidase gene copA, which is directly involved in gold resistance and biomineralisation, was the 15th most intense response and was detected in 246 genera. The Parker Road and Belle Brooke sites were consistently the most different from other sites, which may be a result of local physicochemical conditions (extreme nutrient poverty and sulphur-richness, respectively). In conclusion, biofilms on gold particles display wide-ranging metabolic and stress-related capabilities, which may enable them to survive in these niche environments and drive biotransformation of gold particles.

Microbially mediated nutrient cycles in marine sponges.

Efficient nutrient cycles mediated by symbiotic microorganisms with their hosts are vital to support the high productivity of coral reef ecosystems. In these ecosystems, marine sponges are important habitat-forming organisms in the benthic community and harbor abundant microbial symbionts. However, few studies have reviewed the critical microbially mediated nutrient cycling processes in marine sponges. To bridge this gap, in this review article, we summarize existing knowledge and recent advances in understanding microbially mediated carbon (C), nitrogen (N), phosphorus (P) and sulfur (S) cycles in sponges, propose a conceptual model that describes potential interactions and constraints in the major nutrient cycles, and suggest that shifting redox state induced by animal behavior like sponge pumping can exert great influence on the activities of symbiotic microbial communities. Constraints include the lack of knowledge on spatial and temporal variations and host behavior; more studies are needed in these areas. Sponge microbiomes may have a significant impact on the nutrient cycles in the world's coral reef ecosystems.

Biogeochemical Dynamics Research in the Anthropocene

The present paper provides a perspective on selected key issues driving inquiry in biogeochemical dynamics research of Twenty-first century, which could contribute to filling of knowledge gaps toward development of the systems biogeochemistry approach. The specific focus is on understanding of the multiscale processes and effects involving elements and chemical compounds, their interactions with other environmental variables, as well as the development of integrative quantitative models and their validation. The special attention is paid on the necessity to decipher the biogeochemical dynamics of the novel entities and combinations of inorganic and/or organic chemicals in the environment,as well as their critical linkages and feedbacks with major nutrient cycles, the interplays with climate change and other anthropogenic stressors. Taking advantage of rapidly developing omics approaches and stable isotopes of non-traditional metals as well as the synergies arising from their integration in the biogeochemical modeling are discussed together with their potential to transform biogeochemical studies and push toward new frontiers in biogeochemical dynamics knowledge.

Specific Effect of Trace Metals on Marine Heterotrophic Microbial Activity and Diversity: Key Role of Iron and Zinc and Hydrocarbon-Degrading Bacteria.

Marine microbes are an important control on the biogeochemical cycling of trace metals, but simultaneously, these metals can control the growth of microorganisms and the cycling of major nutrients like C and N. However, studies on the response/limitation of microorganisms to trace metals have traditionally focused on the response of autotrophic phytoplankton to Fe fertilization. Few reports are available on the response of heterotrophic prokaryotes to Fe, and even less to other biogeochemically relevant metals. We performed the first study coupling dark incubations with next generation sequencing to specifically target the functional and phylogenetic response of heterotrophic prokaryotes to Fe enrichment. Furthermore, we also studied their response to Co, Mn, Ni, Zn, Cu (individually and mixed), using surface and deep samples from either coastal or open-ocean waters. Heterotrophic prokaryotic activity was stimulated by Fe in surface open–ocean, as well as in coastal, and deep open-ocean waters (where Zn also stimulated). The most susceptible populations to trace metals additions were uncultured bacteria (e.g., SAR324, SAR406, NS9, and DEV007). Interestingly, hydrocarbon-degrading bacteria (e.g., Thalassolituus, Marinobacter, and Oleibacter) benefited the most from metal addition across all waters (regions/depths) revealing a predominant role in the cycling of metals and organic matter in the ocean.

Biogeodynamics: bridging the gap between surface and deep Earth processes.

Life is sustained by a critical and not insubstantial set of elements, nearly all of which are contained within large rock reservoirs and cycled between Earth's surface and the mantle via subduction zone plate tectonics. Over geologic time scales, plate tectonics plays a critical role in recycling subducted bioactive elements lost to the mantle back to the ocean-biosphere system, via outgassing and volcanism. Biology additionally relies on tectonic processes to supply rock-bound 'nutrients' to marine and terrestrial ecosystems via uplift and erosion. Thus, the development of modern-style plate tectonics and the generation of stable continents were key events in the evolution of the biosphere on Earth, and similar tectonic processes could be crucial for the development of habitability on exoplanets. Despite this vital 'biogeodynamic' connection, directly testing hypotheses about feedbacks between the deep Earth and the biosphere remains challenging. Here, I discuss potential avenues to bridge the biosphere-geosphere gap, focusing specifically on the global cycling and bioavailability of major nutrients (nitrogen and phosphorus) over geologic time scales.This article is part of a discussion meeting issue 'Earth dynamics and the development of plate tectonics'.

Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community.

Aquatic environments contain large communities of microorganisms whose synergistic interactions mediate the cycling of major and trace nutrients, including vitamins. B-vitamins are essential coenzymes that many organisms cannot synthesize. Thus, their exchange among de novo synthesizers and auxotrophs is expected to play an important role in the microbial consortia and explain some of the temporal and spatial changes observed in diversity. In this study, we analyzed metatranscriptomes of a natural marine microbial community, diel sampled quarterly over one year to try to identify the potential major B-vitamin synthesizers and consumers. Transcriptomic data showed that the best-represented taxa dominated the expression of synthesis genes for some B-vitamins but lacked transcripts for others. For instance, Rhodobacterales dominated the expression of vitamin-B12 synthesis, but not of vitamin-B7 , whose synthesis transcripts were mainly represented by Flavobacteria. In contrast, bacterial groups that constituted less than 4% of the community (e.g., Verrucomicrobia) accounted for most of the vitamin-B1 synthesis transcripts. Furthermore, ambient vitamin-B1 concentrations were higher in samples collected during the day, and were positively correlated with chlorophyll-a concentrations. Our analysis supports the hypothesis that the mosaic of metabolic interdependencies through B-vitamin synthesis and exchange are key processes that contribute to shaping microbial communities in nature.

Ecology and Biotechnological Potential of Bacteria Belonging to the Genus Pseudovibrio.

Members of the genus Pseudovibrio have been isolated worldwide from a great variety of marine sources as both free-living and host-associated bacteria. So far, the available data depict a group of alphaproteobacteria characterized by a versatile metabolism, which allows them to use a variety of substrates to meet their carbon, nitrogen, sulfur, and phosphorous requirements. Additionally, Pseudovibrio-related bacteria have been shown to proliferate under extreme oligotrophic conditions, tolerate high heavy-metal concentrations, and metabolize potentially toxic compounds. Considering this versatility, it is not surprising that they have been detected from temperate to tropical regions and are often the most abundant isolates obtained from marine invertebrates. Such an association is particularly recurrent with marine sponges and corals, animals that play a key role in benthic marine systems. The data so far available indicate that these bacteria are mainly beneficial to the host, and besides being involved in major nutrient cycles, they could provide the host with both vitamins/cofactors and protection from potential pathogens via the synthesis of antimicrobial secondary metabolites. In fact, the biosynthetic abilities of Pseudovibrio spp. have been emerging in recent years, and both genomic and analytic studies have underlined how these organisms promise novel natural products of biotechnological value.

Declining oxygen in the global ocean and coastal waters.

Oxygen is fundamental to life. Not only is it essential for the survival of individual animals, but it regulates global cycles of major nutrients and carbon. The oxygen content of the open ocean and coastal waters has been declining for at least the past half-century, largely because of human activities that have increased global temperatures and nutrients discharged to coastal waters. These changes have accelerated consumption of oxygen by microbial respiration, reduced solubility of oxygen in water, and reduced the rate of oxygen resupply from the atmosphere to the ocean interior, with a wide range of biological and ecological consequences. Further research is needed to understand and predict long-term, global- and regional-scale oxygen changes and their effects on marine and estuarine fisheries and ecosystems.

A dynamic energy budget (DEB) model to describe population dynamics of the marine cyanobacterium Prochlorococcus marinus

Small but numerically dominant species such as the cyanobacteria Prochlorococcus play a pivotal role in major nutrient cycles. To understand how Prochlorococcus populations affect nutrient flows, we present and analyze two alternative population models. These models − one including over-shading effects and one not − are based on Dynamic Energy Budget (DEB) theory to describe how growth may be affected by the availability of CO2 and/or inorganic nutrients and by changes in light conditions. In these models individuals have reserves for C, N, and P from which fluxes for maintenance and growth are mobilized. Time series data from laboratory studies of growth under three different nutrient concentrations are used to calibrate the models. The model with carbon, nitrogen and phosphate as limiting factors can reasonably describe the growth in the low N and low P media experiments, while the model with over-shading gives a proper description of the growth under all tested experimental conditions. Modeled C:N:P ratios are within range of reported in scientific literature ones and similar to measured ratios. The results suggest that (1) reserves play a critical role for cyanobacteria to thrive under the often oligotrophic conditions in which they live, and (2) over-shading has a considerable effect as co-limiting factor on the growth of cyanobacteria. We argue that an individual DEB-based model in which multiple nutrient limitations are presented can be used to successfully describe cyanobacterium growth patterns in batch cultures.

The biogeochemical iron cycle and astrobiology

Biogeochemistry investigates chemical cycles which influence or are influenced by biological activity. Astrobiology studies the origin, evolution and distribution of life in the universe. The biogeochemical Fe cycle has controlled major nutrient cycles such as the C cycle throughout geological time. Iron sulfide minerals may have provided energy and surfaces for the first pioneer organisms on Earth. Banded iron formations document the evolution of oxygenic photosynthesis. To assess the potential habitability of planets other than Earth one looks for water, an energy source and a C source. On Mars, for example, Fe minerals have provided evidence for the past presence of liquid water on its surface and would provide a viable energy source. Here we present Mossbauer spectroscopy investigations of Fe and C cycle interactions in both ancient and modern environments. Experiments to simulate the diagenesis of banded iron formations indicate that the formation of ferrous minerals depends on the amount of biomass buried with ferric precursors rather than on the atmospheric composition at the time of deposition. Mossbauer spectra further reveal the mutual stabilisation of Fe-organic matter complexes against mineral transformation and decay of organic matter into CO2. This corresponds to observations of a ‘rusty carbon sink’ in modern sediments. The stabilisation of Fe-organic matter complexes may also aid transport of particulate Fe in the water column while having an adverse effect on the bioavailability of Fe. In the modern oxic ocean, Fe is insoluble and particulate Fe represents an important source. Collecting that particulate Fe yields small sample sizes that would pose a challenge for conventional Mossbauer experiments. We demonstrate that the unique properties of the beam used in synchrotron-based Mossbauer applications can be utilized for studying such samples effectively. Reactive Fe species often occur in amorphous or nanoparticulate form in the environment and are therefore difficult to study with standard mineralogical tools. Sequential extraction techniques are commonly used as proxies. We provide an example where Mossbauer spectroscopy can replace sequential extraction techniques where mineralogical information is sought. Where mineral separation is needed, for example in the investigation of Fe or S isotope fractionation, Mossbauer spectroscopy can help to optimize sequential extraction procedures. This can be employed in a large number of investigations of soils and sediments, potentially even for mineral separation to study Fe and S isotope fractionation in samples returned from Mars, which might reveal signatures of biological activity. When looking for the possibility of life outside Earth, Jupiter’s icy moon Europa is one of the most exciting places. It may be just in reach for a Mossbauer spectrometer deployed by a future lander to study the red streak mineral deposits on its surface to look for clues about the composition of the ocean hidden under the moon’s icy surface.

Soil carbon characterization and nutrient ratios across land uses on two contrasting soils: Their relationships to microbial biomass and function

Soil carbon (C) plays a central role in the global biogeochemical cycles of most major nutrients, but the degree to which the quality versus quantity of C controls microbial abundance and function across land uses is still somewhat uncertain. We measured soil organic matter (SOM) concentration and composition as well as nutrient ratios and other soil characteristics on two contrasting soil types across three land uses (forest, pasture, maize cropping), to determine their relationships to microbial abundance and specific measures of microbial activity (e.g. qCO2, the ratio of respiration rate to microbial biomass, and net laboratory N mineralization). Although there was significant variability in bulk SOM composition (by 13C NMR spectroscopy), we could detect differences between broad-leaved forest and pasture/maize systems on a landscape scale, primarily attributable to differences in aryl C content. Variability in O-alkyl C between sites correlated strongly with the soil C:N ratio, but variability in alkyl C (which was particularly evident in pasture sites) could not be adequately explained by measured environmental or soil characteristics. Soil C:P and N:P ratios followed similar patterns with forest > pasture > maize. Bulk soil C:N, hot-water extractable C:N and particulate C:N all followed similar patterns with forest > pasture ≈ maize cropping. Microbial biomass C:N followed a different pattern, however, with forest ≈ pasture > maize. Despite the differences in SOM composition and nutrient ratios, anaerobically mineralizable N and hot-water extractable C (as a measures of available C) best explained the variation in microbial biomass and function across sites. Anaerobically mineralizable N generally explained the most variation for microbial biomass and qCO2 and had the smallest soil or land use effect. Hot-water extractable C explained the most variance for net N mineralization. Addition of stoichiometric measures and other soil attributes (e.g. soil C:N, C:P, δ15N) in a multiple regression model explained more of the variation than a single factor plus the land use effect (though soil order still explained a small, but significant amount of variance for measures of microbial biomass). A measure of available C, however, was needed to explain the maximum amount of variance in microbial biomass and function across sites (i.e. total C plus nutrient status and other soil attributes could not explain as much of the variance). Our data suggest that nutrient content/stoichiometry does assist in defining the quality of SOM, but a measure of available C (similar to the “active” pool in C models) is also needed. Anaerobically mineralizable N and/or hot water–water extractable C appear to be adequate measures of available C that relate to “active” C, but C functional groups (from 13C NMR spectroscopy) were not particularly useful for this purpose.