Cyclic Macromolecules Research Articles

Cyclic macromonomer from a multifunctional atom transfer radical polymerization initiator via sulfoxide-based vinyl protection

A novel synthetic approach to vinyl-functionalized cyclic macromolecules via sulfoxide chemistry.

Experimental and theoretical study on supramolecular encapsulation of molnupiravir by Cucurbit[7]uril: A potential formulating agent for COVID-19

Global propagation of the Novel Coronavirus Diseases-2019 (COVID-19) outbreak threatens the scientific community's ability to develop and learn effective SARS-CoV-2 treatment methods. Most of the current therapeutics have some form of side effects to treat COVID-19. The requirement for new medications emerges as a consequence of the evolution of new strain such as EG.5.1. Remdesivir, Molnupiravir, Favipiravir, Ribavirin, Baricitinib, Camostat, and other pharmaceuticals have been used to treat patients with COVID-19, among which only Molnupiravir was a novel synthesized agent while the rest were all repurposed medications. However, the side effects from these medications, such as vomiting, diarrhea, dizziness etc., necessitate immediate medical attention. To decrease the toxicity of some medications and increase their efficacy, cyclic macromolecules such as α/β-Cyclodextrin or Cucurbit[n]uril (n = 6–8) can play an important role by forming host–guest complexes. The drugs were coupled with several host molecules in the current investigation to examine their effectiveness against SARS-CoV-2 proteins via a molecular docking study, which revealed that Cucurbit[7]uril-molnupiravir had superior performance against SARS-CoV-2. The inclusion complex was synthesized and characterized via different characterization techniques to prove the formation of stable 1:1 complex. Furthermore, DFT studies also validate our experimental observations.

Peptide-Resorcinarene Conjugates Obtained via Click Chemistry: Synthesis and Antimicrobial Activity.

Antimicrobial resistance (AMR) is one of the top ten threats to public health, as reported by the World Health Organization (WHO). One of the causes of the growing AMR problem is the lack of new therapies and/or treatment agents; consequently, many infectious diseases could become uncontrollable. The need to discover new antimicrobial agents that are alternatives to the existing ones and that allow mitigating this problem has increased, due to the rapid and global expansion of AMR. Within this context, both antimicrobial peptides (AMPs) and cyclic macromolecules, such as resorcinarenes, have been proposed as alternatives to combat AMR. Resorcinarenes present multiple copies of antibacterial compounds in their structure. These conjugate molecules have exhibited antifungal and antibacterial properties and have also been used in anti-inflammatory, antineoplastic, and cardiovascular therapies, as well as being useful in drug and gene delivery systems. In this study, it was proposed to obtain conjugates that contain four copies of AMP sequences over a resorcinarene core. Specifically, obtaining (peptide)4-resorcinarene conjugates derived from LfcinB (20-25): RRWQWR and BF (32-34): RLLR was explored. First, the synthesis routes that allowed obtaining: (a) alkynyl-resorcinarenes and (b) peptides functionalized with the azide group were established. These precursors were used to generate (c) (peptide)4-resorcinarene conjugates by azide-alkyne cycloaddition CuAAC, a kind of click chemistry. Finally, the conjugates' biological activity was evaluated: antimicrobial activity against reference strains and clinical isolates of bacteria and fungi, and the cytotoxic activity over erythrocytes, fibroblast, MCF-7, and HeLa cell lines. Our results allowed establishing a new synthetic route, based on click chemistry, for obtaining macromolecules derived from resorcinarenes functionalized with peptides. Moreover, it was possible to identify promising antimicrobial chimeric molecules that may lead to advances in the development of new therapeutic agents.

The Topology of Polymer Brushes Determines Their Nanoscale Hydration.

Time-of-flight neutron reflectometry (ToF-NR) performed under different relative humidity conditions demonstrates that polymer brushes constituted by hydrophilic, cyclic macromolecules exhibit a more compact conformation with lower roughness as compared to linear brush analogues, due to the absence of dangling chain ends extending at the polymer-vapor interface. In addition, cyclic brushes feature a larger swelling ratio and an increased solvent uptake with respect to their linear counterparts as a consequence of the increased interchain steric repulsions. It is proposed that differences in swelling ratios between linear and cyclic brushes come from differences in osmotic pressure experienced by each brush topology. These differences stem from entropic constraints. The findings suggest that to correlate the equilibrium swelling ratios at different relative humidity for different topologies a new form of the Flory-like expression for equilibrium thicknesses of grafted brushes is needed.

Encapsulated hydroxychloroquine and chloroquine into cyclic oligosaccharides are the potential therapeutics for COVID-19: insights from first-principles calculations

Novel-Coronavirus (COVID-19) outburst has become a worldwide pandemic which threaten the scientific community to design and discover efficient and effective treatment strategies against this deadly virus (SARS-CoV-2). Still now, there is no antiviral therapy or drug available in the market which can efficiently combat the infection caused by this virus. In this respect, using available drugs by screening with molecular docking and molecular dynamics studies not only minimizes lengthy chemical trials but also reduces discovery cost for the pharmaceutical industry. During the COVID-19 pandemic situations hydroxychloroquine, chloroquine known as HCQ and CQ tablets have gained popularity as for the treatment coronavirus (COVID-19) but the main threatening effect of HCQ, CQ use lies on their side effects like blistering, peeling, loosening of the skin, blurred vision stomach pain, diarrhea, chest discomfort, pain, or tightness, cough or hoarseness which require immediate medical attention. Encapsulation of HCQ and CQ drugs by the cyclic macromolecules such as α and β-Cyclodextrin, to form host-guest complexes is very effective strategy to mask the cytotoxicity of certain drugs and alleviating and modulating side effects of drug applications. In the present work, we have encapsulated the HCQ and CQ drugs α and β-Cyclodextrin and made a comprehensive analysis of stability, optical properties. Details analysis verified that between QC and HCQ, HQC showed stronger affinity towards β-Cyclodextrin. This strategy can reduce the side effect of HCQ and CQ thereby offers a new way to use these drugs. We hope the present study should help the researchers to develop potential therapeutics against the novel coronavirus.

A Cyclic Ruthenium Benzylidene Initiator Platform Enhances Reactivity for Ring-Expansion Metathesis Polymerization.

Ring-expansion metathesis polymerization (REMP) has shown potential as an efficient strategy to access cyclic macromolecules. Current approaches that utilize cyclic olefin feedstocks suffer from poor functional group tolerance, low initiator stability, and slow reaction kinetics. Improvements to current initiators will address these issues in order to develop more versatile and user-friendly technologies. Herein, we report a reinvigorated tethered ruthenium-benzylidene initiator, CB6, that utilizes design features from ubiquitous Grubbs-type initiators that are regularly applied in linear polymerizations. We report the controlled synthesis of functionalized cyclic poly(norbornene)s and demonstrate that judicious ligand modifications not only greatly improve kinetics but also lead to enhanced initiator stability. Overall, CB6 is an adaptable platform for the study and application of cyclic macromolecules via REMP.

Advancing macromolecular hoop construction: recent developments in synthetic cyclic polymer chemistry

Synthetic methodology to access cyclic macromolecules continues to developviatwo distinct mechanistic classes: ring-expansion of macrocyclic initiators and ring-closure of functionalized linear polymers.

Hydrogels Generated from Cyclic Poly(2-Oxazoline)s Display Unique Swelling and Mechanical Properties.

Cyclic macromolecules do not feature chain ends and are characterized by a higher effective intramolecular repulsion between polymer segments, leading to a higher excluded-volume effect and greater hydration with respect to their linear counterparts. As a result of these unique properties, hydrogels composed of cross-linked cyclic polymers feature enhanced mechanical strength while simultaneously incorporating more solvent with respect to networks formed from their linear analogues with identical molar mass and chemical composition. The translation of topology effects by cyclic polymers into the properties of polymer networks provides hydrogels that ideally do not include defects, such as dangling chain ends, and display unprecedented physicochemical characteristics.

Emergence of low-symmetry foldamers from single monomers.

Self-assembly is a powerful method to obtain large discrete functional molecular architectures. When using a single building block, self-assembly generally yields symmetrical objects in which all the subunits relate similarly to their neighbours. Here we report the discovery of a family of self-constructing cyclic macromolecules with stable folded conformations of low symmetry, which include some with a prime number (13, 17 and 23) of units, despite being formed from a single component. The formation of these objects amounts to the production of polymers with a perfectly uniform length. Design rules for the spontaneous emergence of such macromolecules include endowing monomers with a strong potential for non-covalent interactions that remain frustrated in competing entropically favoured yet conformationally restrained smaller cycles. The process can also be templated by a guest molecule that itself has an asymmetrical structure, which paves the way to molecular imprinting techniques at the level of single polymer chains.

Topological Polymer Chemistry Enters Materials Science: Expanding the Applicability of Cyclic Polymers.

Polymer-topology effects can alter technologically relevant properties when cyclic macromolecules are applied within diverse materials formulations. These include coatings, polymer networks, or nanostructures for delivering therapeutics. While substituting linear building blocks with cyclic analogues in commonly studied materials is itself of fundamental interest, an even more fascinating observation has been that the introduction of physical or chemical boundaries (e.g., a grafting surface or cross-links) can amplify the topology-related effects observed when employing cyclic polymer-based precursors for assembling multidimensional objects. Hence, the application of cyclic polymers has enabled the fabrication of coatings with enhanced biorepellency and superior lubricity, broadened the tuning potential for mechanical properties of polymer networks, increased the thermodynamic stability, and altered the capability of loading and releasing drugs within polymeric micelles.

Theoretical study on preference of open polymer vs. cyclic products in CO2/epoxide copolymerization with cobalt(III)-salen bifunctional catalysts

The preference of open chain of growing macromolecule vs. possible cyclic form was examined for the bifunctional cobalt(III)-salen catalyst for the copolymerization of CO2 with epoxides. A variety of possible isomers was considered (resulting from trans/cis-β salen arrangement, different mutual orientation of quaternary ammonium-chains, and possible binding modes). To explore the conformational space, a combined approach was applied, utilizing semiempirical (PM7) MD and the DFT calculations. The preference of the open and cyclic macromolecules attached to the metal center was compared with the corresponding results for isolated model macromolecules, and the systems built of the macromolecule interacting with the tetra-butyl ammonium cation. Result shows that the cyclic structures are strongly preferred for isolated ions, with relatively low cyclization barriers. In the field of positive point charge, the open structures are strongly preferred. For the ions interacting with tetrabutyl ammonium cation, the cyclic structures are preferred, due to delocalization of the positive charge in the cation. For the complexes involving model and “real” Co(III)-salen catalysts, the open structures are strongly preferred. The possible cyclization by dissociation of alkoxide and its transfer to the neighborhood of quaternary ammonium cation is characterized by high activation barriers. Further, the transfer of alkoxide from the metal center to the cation is less likely than the transfer of carbonate, since the metal-alkoxide bond-energy energy is much stronger than energy of metal-carbonate bonding, as shown by ETS-NOCV results. The conclusions are in qualitative agreement with experimental data showing high selectivity towards copolymer formation in the copolymerization processes catalyzed by bifunctional Co(III) salen-complexes.Graphical abstract

Donut Assembly of Nanoparticles with High Catalytic Efficiency for Hydrogen Gas Generation from Ammonia Borane

AbstractPolymer‐supported transition metal nano particles usually exhibited low catalytic efficiency due to the long diffusion length for the reactants to reach the catalytic center. Herein, we used cyclic polymers to construct donut‐like assembly with two cyclic macromolecules sandwiching a layer of metal NPs. Doping Rh into the nano particles led to extremely active catalysts for ammonia borane decomposition with a high TOF of 780 min−1. We attributed the high efficiency to the reduced diffusion length in this special assembly. Light‐promoted effect was also demonstrated with TOF further elevated to 980 min−1. The modular nature of this design also permitted subsequent structural modification to achieve high stability with TON reaching over 2×106.

Adsorption of Benzene and Water onto a Composite Sorbent Formed by an Active Carbon Layer with Grafted Cyclic Ethanolamine Macromolecules Bonded to Fabric

Isotherms of benzene and water vapor adsorption onto a composite material made of a layer of active carbon microparticles and cyclic ethanolamine macromolecules bonded to cellulose are measured. The layer is formed by carbon particles with sizes of 2.5–4 µm and grafted porous macromolecular ethanolamine. The latter combines the particles into electron-conducting and luminescent aggregates. The pores in carbon are connected with those of cyclic amines through voids formed by the cycles of oxo-amine groups and conjugated carbon groups on the surfaces of carbon particles. It is found that when the relative pressure is increased, the pores in amines, where the sorbed molecules are combined into host–guest complexes, are filled first. This is followed by estafetee filling of the pores with water or benzene molecules.

Chain-Conformation-Directed Polymerization Cyclization for Effective Synthesis of Macrocycles in Bulk.

Biological cyclization is highly efficient, and this can be attributed to the conformation of the backbone of the biopolymer. Taking advantage of metal-coordination geometry, we developed a method for conformation-directed polymerization cyclization through rational design of metal carbonyl monomers that could be used to produce cyclic macromolecules, even in bulk. P FpR [P Fp=(PPh2 (CH2 )3 Cp)Fe(CO)2 with the phosphine group tethered on the cyclopentadiene (Cp) ring; R=CH3 or (CH2 )5 CH3 ] was designed and synthesized for migration insertion polymerization to generate P(P FpR) with the polymer backbone containing Cp-Fe bonds. Growth of the backbone led to a cyclic conformation with close end-to-end distances, which facilitated the cyclization. This conformation-directed cyclization was attributed to the piano-stool metal-coordination geometry of the repeating units and the low rotational barrier of the Cp-Fe bonds in the backbone. The produced macrocycles, which contain a metal carbonyl coordination structure in their backbones, are rigid, unlike many organic macrocycles. The macrocycles thus have a large excluded volume. This new type of metal carbonyl macrocycle will be of interest as a building block for supramolecular chemistry and in the exploration of novel materials.

Topology effects of cyclic polymers: Controlling the topology for innovative functionalities

Since polymers of cyclic topology have no main chain terminus, and the conformation is limited, they show physical and chemical properties different from those of linear polymers even the composition and molecular weight are the same. In order to pursue functions based on the topology of polymers, we have developed synthetic methods for cyclic polymers and constructed nanostructures by self-assembly. As a result, it was found that micelles and vesicles formed by cyclic polymers exhibit characteristics, which were greatly changed as compared with those of linear polymers. Based on cyclic-to-linear transformation, a gelling agent was developed, and furthermore, the reversible and repeatable topological conversion was achieved. Moreover, monolayer assemblies such as self-assembled monolayers on a gold surface and Langmuir–Blodgett films were constructed from cyclic macromolecules.

Synthesis of Cyclic Megamolecules.

This paper describes the synthesis of giant cyclic molecules having diameters of 10-20 nm. The molecules are prepared through the reactions of a fusion protein building block with small molecule linkers that are terminated in irreversible inhibitors of enzyme domains present in the fusion. This building block has N-terminal cutinase and C-terminal SnapTag domains that react irreversibly with p-nitrophenyl phosphonate (pNPP) and benzylguanine (BG) groups, respectively. We use a bis-BG and a BG-pNPP linker to join these fusion proteins into linear structures that can then react with a bis-pNPP linker that joins the ends into a cyclic product. The last step can occur intramolecularly, to give the macrocycle, or intermolecularly with another equivalent of linker, to give a linear product. Because these are coupled first- and second-order processes, an analysis of product yields from reactions performed at a range of linker concentrations gives rate constants for cyclization. We determined these to be 9.7 × 10-3 s-1, 2.3 × 10-3 s-1, and 8.1 × 10-4 s-1 for the dimer, tetramer, and hexamer, respectively. This work demonstrates an efficient route to cyclic macromolecules having nanoscale dimensions and provides new scaffolds that can be generated using the megamolecule approach.

Cyclic Polymer Grafts That Lubricate and Protect Damaged Cartilage

AbstractTissue‐reactive graft copolymers were designed to protect the cartilage against enzymatic degradation and restore its lubrication properties during the early stages of osteoarthritis (OA). The copolymers feature a poly(glutamic acid) (PGA) backbone bearing hydroxybenzaldehyde (HBA) functions and cyclic poly(2‐methyl‐2‐oxazoline) (PMOXA) side chains. PGA‐PMOXA‐HBA species chemisorb on the degraded tissue via Schiff bases and expose the biopassive and lubricious PMOXA cyclic grafts at the interface. The smaller hydrodynamic radius by cyclic PMOXA side chains coupled to the intrinsic absence of chain ends generate denser and more lubricious films on cartilage when compared to those produced by copolymers bearing linear PMOXA. Topology effects demonstrate how the introduction of cyclic polymers within tissue‐reactive copolymers substantially improve their tribological and biopassive properties, suggesting a plethora of possible applications for cyclic macromolecules in biomaterials formulations.

Cyclic Polymer Grafts That Lubricate and Protect Damaged Cartilage.

Tissue-reactive graft copolymers were designed to protect the cartilage against enzymatic degradation and restore its lubrication properties during the early stages of osteoarthritis (OA). The copolymers feature a poly(glutamic acid) (PGA) backbone bearing hydroxybenzaldehyde (HBA) functions and cyclic poly(2-methyl-2-oxazoline) (PMOXA) side chains. PGA-PMOXA-HBA species chemisorb on the degraded tissue via Schiff bases and expose the biopassive and lubricious PMOXA cyclic grafts at the interface. The smaller hydrodynamic radius by cyclic PMOXA side chains coupled to the intrinsic absence of chain ends generate denser and more lubricious films on cartilage when compared to those produced by copolymers bearing linear PMOXA. Topology effects demonstrate how the introduction of cyclic polymers within tissue-reactive copolymers substantially improve their tribological and biopassive properties, suggesting a plethora of possible applications for cyclic macromolecules in biomaterials formulations.

ConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis

Macrocycles are cyclic macromolecules that have gained an increased interest in drug development. To our knowledge, the current bioinformatics tools that are available to investigate and predict macrocycles 3D conformations are limited in their availability. In this paper, we introduce ConfBuster, a suite of tools written in Python with the goal of sampling the lower energy conformations of macrocycles. The suite also includes tools for the analysis and visualisation of the conformational search results. Coordinate sets of single molecules in MOL2 or PDB format are required as input, and a set of lower energy conformation coordinates is returned as output, as well as PyMOL script and graphics for results analysis. In addition to Python and the optional R programming languages with freely available packages, the tools require Open Babel and PyMOL to work properly. For several examples, ConfBuster found macrocycle conformations that are within few tenths of Å of the experimental structures in minutes. To our knowledge, this is the only open-source tools for macrocycle conformational search available to the scientific community

ChemInform Abstract: Cyclic Polymers by Ring‐Closure Strategies

AbstractReview: [92 refs.