Context. The mass loss experienced on the asymptotic giant branch (AGB) at the end of the lives of low- and intermediate-mass stars is widely accepted to rely on radiation pressure acting on newly formed dust grains. Dust formation happens in the extended atmospheres of these stars, where the density, velocity, and temperature distributions are strongly affected by convection, stellar pulsation, and heating and cooling processes. The interaction between these processes and how that affects dust formation and growth is complex. Hence, characterising the extended atmospheres empirically is paramount to advance our understanding of the dust formation and wind-driving processes. Aims. We aim to determine the density, temperature, and velocity distributions of the gas in the extended atmosphere of the AGB star R Dor. Methods. We acquired observations using ALMA towards R Dor to study the gas through molecular line absorption and emission. We modelled the observed 12CO v = 0, J = 2 − 1, v = 1, J = 2 − 1, and 3 − 2 and 13CO v = 0, J = 3 − 2 lines using the 3D radiative transfer code LIME to determine the density, temperature, and velocity distributions up to a distance of four times the radius of the star at sub-millimetre wavelengths. Results. The high angular resolution of the sub-millimetre maps allows for even the stellar photosphere to be spatially resolved. By analysing the absorption against the star, we infer that the innermost layer in the near-side hemisphere is mostly falling towards the star, while gas in the layer above that seems to be mostly outflowing. Interestingly, the high angular resolution of the ALMA Band 7 observations reveal that the velocity field of the gas seen against the star is not homogenous across the stellar disc. The gas temperature and density distributions have to be very steep close to the star to fit the observed emission and absorption, but they become shallower for radii larger than ∼1.6 times the stellar sub-millimetre radius. While the gas mass in the innermost region is hundreds of times larger than the mass lost on average by R Dor per pulsation cycle, the gas densities just above this region are consistent with those expected based on the mass-loss rate and expansion velocity of the large-scale outflow. Our fits to the line profiles require the velocity distribution on the far side of the envelope to be mirrored, on average, with respect to that on the near side. Using a sharp absorption feature seen in the CO v = 0, J = 2 − 1 line, we constrained the standard deviation of the stochastic velocity distribution in the large-scale outflow to be ≲0.4 km s−1. We characterised two blobs detected in the CO v = 0, J = 2 − 1 line and found densities substantially larger than those of the surrounding gas. The two blobs also display expansion velocities that are high relative to that of the large-scale outflow. Monitoring the evolution of these blobs will lead to a better understanding of the role of these structures in the mass-loss process of R Dor.
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