Crystallographic Structure Research Articles

Enhanced stabilisation and reduced fibril forming potential of an amyloidogenic light chain using a variable heavy domain to mimic the homodimer complex.

Light chain amyloidosis (AL), is classified as a plasma cell dyscrasia, whereby a mutant plasma cell multiplies uncontrollably and secretes enormous amounts of immunoglobulin-free light chain (FLC) fragments. These FLCs undergo a process of misfolding and aggregation into amyloid fibrils, that can cause irreversible system-wide damage. Current treatments that focus on depleting the underlying plasma cell clone are often poorly tolerated, particularly in patients with severe cardiac involvement, meaning patient prognosis is poor. An alternative treatment approach currently being explored is the inhibition of FLC aggregation by stabilisation of the native conformer. Here, we aimed to identify and characterise antibody fragments that target FLC domains and promote their stabilisation. Using phage-display screening methods, we identified a variable heavy (VH) domain, termed VH1, targeted towards the FLC. Using differential scanning fluorimetry and surface plasmon resonance, VH1 was characterised to bind and kinetically stabilise an amyloidogenic FLC, whereby a > 5.5 °C increase in thermal stability was noted. This improved stability corresponded to the inhibition of fibril formation, where 10 : 1 LC : VH1 concentration reduced aggregation to baseline levels. X-ray crystallographic structures of the LC : VH1 complex at atomic resolution revealed binding in a 1 : 1 ratio, mimicking the dimeric antigen binding sites of the native immunoglobulin molecule and the native LC homodimer.

Enhanced stabilisation and reduced fibril forming potential of an amyloidogenic light chain using a variable heavy domain to mimic the homodimer complex.

Light chain amyloidosis (AL), is classified as a plasma cell dyscrasia, whereby a mutant plasma cell multiplies uncontrollably and secretes enormous amounts of immunoglobulin-free light chain (FLC) fragments. These FLCs undergo a process of misfolding and aggregation into amyloid fibrils, that can cause irreversible system-wide damage. Current treatments that focus on depleting the underlying plasma cell clone are often poorly tolerated, particularly in patients with severe cardiac involvement, meaning patient prognosis is poor. An alternative treatment approach currently being explored is the inhibition of FLC aggregation by stabilisation of the native conformer. Here, we aimed to identify and characterise antibody fragments that target FLC domains and promote their stabilisation. Using phage-display screening methods, we identified a variable heavy (VH) domain, termed VH1, targeted towards the FLC. Using differential scanning fluorimetry and surface plasmon resonance, VH1 was characterised to bind and kinetically stabilise an amyloidogenic FLC, whereby a > 5.5 °C increase in thermal stability was noted. This improved stability corresponded to the inhibition of fibril formation, where 10 : 1 LC : VH1 concentration reduced aggregation to baseline levels. X-ray crystallographic structures of the LC : VH1 complex at atomic resolution revealed binding in a 1 : 1 ratio, mimicking the dimeric antigen binding sites of the native immunoglobulin molecule and the native LC homodimer.

Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM.

Membrane binding is a crucial mechanism for many proteins, but understanding the specific interactions between proteins and membranes remains a challenging endeavor. Coagulation factor Va (FVa) is a large protein whose membrane interactions are complicated due to the presence of multiple anchoring domains that individually can bind to lipid membranes. Using molecular dynamics simulations, we investigate the membrane binding of FVa and identify the key mechanisms that govern its interaction with membranes. Our results reveal that FVa can either adopt an upright or a tilted molecular orientation upon membrane binding. We further find that the domain organization of FVa deviates (sometimes significantly) from its crystallographic reference structure, and that the molecular orientation of the protein matches with domain reorganization to align the C2 domain toward its favored membrane-normal orientation. We identify specific amino acid residues that exhibit contact preference with phosphatidylserine lipids over phosphatidylcholine lipids, and we observe that mostly electrostatic effects contribute to this preference. The observed lipid-binding process and characteristics, specific to FVa or common among other membrane proteins, in concert with domain reorganization and molecular tilt, elucidate the complex membrane binding dynamics of FVa and provide important insights into the molecular mechanisms of protein-membrane interactions. An updated version of the HMMM model, termed extHMMM, is successfully employed for efficiently observing membrane bindings of systems containing the whole FVa molecule.

Improvement in thermal stability of ODS-W alloy through formation of complex oxide dispersoids

Thermal stability is a crucial issue for engineering application of tungsten, especially as plasma facing material in future fusion reactor. Two kinds of ODS-W alloys of W-0.5Y2O3 (WY) and W-0.5Y2O3-0.25Ti (WYT) were fabricated by ball milling and spark plasma sintering aiming at formation of oxide dispersoids with different crystallographic structures. Thermal stability of both ODS-W alloys was evaluated in terms of microhardness and microstructure evolution during isothermal aging at 1100 °C. Dispersoids of sesquioxide Y2O3 were identified in sintered WY, while pyrochlore Y2Ti2O7 with finer size and higher number density were developed in sintered WYT, resulting in higher bending strength of 1020 MPa and microhardness of 880 HV. Compared with sesquioxide Y2O3, complex dispersoids of pyrochlore Y2Ti2O7 exhibited much better coarsening resistance during isothermal aging at 1100 °C up to 100 h, where the intracrystalline and GB dispersoids maintained around 10 nm and 30 nm, respectively. The excellent coarsening resistance of complex Y2Ti2O7 with pyrochlore structure contributed to grain refinement and improved microstructure stability of WYT due to the effect of Zener drag.

Structural and mechanistic analysis of Ca2+-dependent regulation of transglutaminase 2 activity using a Ca2+-bound intermediate state

Mammalian transglutaminases, a family of Ca2+-dependent proteins, are implicated in a variety of diseases. For example, celiac disease (CeD) is an autoimmune disorder whose pathogenesis requires transglutaminase 2 (TG2) to deamidate select glutamine residues in diet-derived gluten peptides. Deamidation involves the formation of transient γ-glutamyl thioester intermediates. Recent studies have revealed that in addition to the deamidated gluten peptides themselves, their corresponding thioester intermediates are also pathogenically relevant. A mechanistic understanding of this relevance is hindered by the absence of any structure of Ca2+-bound TG2. We report the X-ray crystallographic structure of human TG2 bound to an inhibitory gluten peptidomimetic and two Ca2+ ions in sites previously designated as S1 and S3. Together with additional structure-guided experiments, this structure provides a mechanistic explanation for how S1 regulates formation of an inhibitory disulfide bond in TG2, while also establishing that S3 is essential for γ-glutamyl thioester formation. Furthermore, our crystallographic findings and associated analyses have revealed that i) two interacting residues, H305 and E363, play a critical role in resolving the thioester intermediate into an isopeptide bond (transamidation) but not in thioester hydrolysis (deamidation); and ii) residues N333 and K176 stabilize preferred TG2 substrates and inhibitors via hydrogen bonding to nonreactive backbone atoms. Overall, the intermediate-state conformer of TG2 reported here represents a superior model to previously characterized conformers for both transition states of the TG2-catalyzed reaction.

Structural Comparison of Substrate Binding Sites in Dehaloperoxidase A and B.

Dehalperoxidase (DHP) has diverse catalytic activities depending on the substrate binding conformation, pH, and dynamics in the distal pocket above the heme. According to our hypothesis, the molecular structure of the substrate and binding orientation in DHP guide enzymatic function. Enzyme kinetic studies have shown that the catalytic activity of DHP B is significantly higher than that of DHP A despite 96% sequence homology. There are more than 30 substrate-bound structures with DHP B, each providing insight into the nature of enzymatic binding at the active site. By contrast, the only X-ray crystallographic structures of small molecules in a complex with DHP A are phenols. This study is focused on investigating substrate binding in DHP A to compare with DHP B structures. Fifteen substrates were selected that were known to bind to DHP B in the crystal to test whether soaking substrates into DHP A would yield similar structures. Five of these substrates yielded X-ray crystal structures of substrate-bound DHP A, namely, 2,4-dichlorophenol (1.48 Å, PDB: 8EJN), 2,4-dibromophenol (1.52 Å, PDB: 8VSK), 4-nitrophenol (2.03 Å, PDB: 8VKC), 4-nitrocatechol (1.40 Å, PDB: 8VKD), and 4-bromo-o-cresol (1.64 Å, PDB: 8VZR). For the remaining substrates that bind to DHP B, such as cresols, 5-bromoindole, benzimidazole, 4,4-biphenol, 4.4-ethylidenebisphenol, 2,4-dimethoxyphenol, and guaiacol, the electron density maps in DHP A are not sufficient to determine the presence of the substrates, much less their orientation. In our hands, only phenols, 4-Br-o-cresol, and 4-nitrocatechol can be soaked into crystalline DHP A. None of the larger substrates were observed to bind. A minimum of seven hanging drops were selected for soaking with more than 50 crystals screened for each substrate. The five high-quality examples of direct comparison of modes of binding in DHP A and B for the same substrate provide further support for the hypothesis that the substrate-binding conformation determines the enzyme function of DHP.

Development of a broad-spectrum therapeutic Fc-nanobody for human noroviruses.

Human norovirus was discovered more than five decades ago and is a widespread cause of outbreaks of acute gastroenteritis. There are no approved vaccines or antivirals currently available. However, norovirus inhibitors, including capsid-specific monoclonal antibodies (Mabs) and nanobodies, have recently shown promising results. Several Mabs and nanobodies were found to inhibit norovirus replication using a human intestinal enteroid (HIE) culture system and/or could block norovirus attachment to histo-blood group antigen (HBGA) co-factors. In our pursuit to develop a single broad-spectrum norovirus therapeutic, we continued our analysis and development of a cross-reactive and HBGA interfering nanobody (NB26). To improve NB26 binding capacity and therapeutic potential, we conjugated NB26 onto a human IgG Fc domain (Fc-NB26). We confirmed that Fc-NB26 cross-reacts with genetically diverse GII genotype capsid protruding (P) domains (GII.8, GII.14, GII.17, GII.24, GII.26, and GII.NA1) using a direct enzyme-linked immunosorbent assay. Furthermore, X-ray crystallography structures of these P domains and structures of other GII genotypes reveal that the NB26 binding site is largely conserved, validating its broad reactivity. We showed that Fc-NB26 has ~100-fold higher affinity toward the norovirus P domain compared to native NB26. We also found that both NB26 and Fc-NB26 neutralize human norovirus replication in the HIE culture system. Furthermore, the mode of inhibition confirmed that like NB26, Fc-NB26 caused norovirus particle disassembly and aggregation. Overall, these new findings demonstrate that structural modifications to nanobodies can improve their therapeutic potential.IMPORTANCEDeveloping vaccines and antivirals against norovirus remains a challenge, mainly due to the constant genetic and antigenic evolution. Moreover, re-infection with genetically related and/or antigenic variants is not uncommon. We further developed our leading norovirus nanobody (NB26) that indirectly interfered with norovirus binding to HBGAs, by converting NB26 into a dimeric Fc-linked Nanobody (Fc-NB26). We found that Fc-NB26 had improved binding affinity and neutralization capacity compared with native NB26. Using X-ray crystallography, we showed this nanobody engaged highly conserved capsid residues among genetically diverse noroviruses. Development of such broadly reactive potent therapeutic nanobodies delivered as a slow-releasing prophylactic could be of exceptional value for norovirus outbreaks, especially for the prevention or treatment of severe acute gastroenteritis in high-risk groups such as the young, elderly, and immunocompromised.

The impact of exchanging the light and heavy chains on the structures of bovine ultralong antibodies.

The third complementary-determining regions of the heavy-chain (CDR3H) variable regions (VH) of some cattle antibodies are highly extended, consisting of 48 or more residues. These `ultralong' CDR3Hs form β-ribbon stalks that protrude from the surface of the antibody with a disulfide cross-linked knob region at their apex that dominates antigen interactions over the other CDR loops. The structure of the Fab fragment of a naturally paired bovine ultralong antibody (D08), identified by single B-cell sequencing, has been determined to 1.6 Å resolution. By swapping the D08 native light chain with that of an unrelated antigen-unknown ultralong antibody, it is shown that interactions between the CDR3s of the variable domains potentially affect the fine positioning of the ultralong CDR3H; however, comparison with other crystallographic structures shows that crystalline packing is also a major contributor. It is concluded that, on balance, the exact positioning of ultralong CDR3H loops is most likely to be due to the constraints of crystal packing.

Phase equilibria and crystallographic structure of clathrate hydrate formed with carbon dioxide and cyclohexanone

This paper reports the phase equilibrium and crystallographic data of the hydrate formed in the CO2 + cyclohexanone + water system. We measured the phase equilibrium condition and conducted the powder X-ray diffraction measurements. The formation of the structure II hydrate in the system of CO2 + cyclohexanone + water was observed at the temperature from 270.0 K to 275.6 K, under the pressure from 0.62 MPa to 1.70 MPa.At 270.0 K – 275.6 K and 0.62 MPa – 1.70 MPa, the structure II hydrate formed, and the phase equilibrium condition alleviated in the system of CO2 + cyclohexanone + water, while the hydrate formed at 276.5 K - 280.7 K and 2.02 MPa – 3.33 MPa, displayed structure I and cyclohexanone acted as an inhibitor. Equilibrium conditions were measured using the isochoric method, revealing different p-T slopes at high and low temperatures. The high-temperature slope closely resembled that of structure I CO2 hydrate reported previously. We continuously monitored temperature and pressure during the structural phase transition, resulting in a slope change. To directly determine the hydrate structure, PXRD measurements were conducted on two samples: one from the high-temperature side and the other from the low-temperature side. The sample from the high-temperature side exhibited structure I with a lattice constant of 11.8749 (9) Å at 153 K, while the low-temperature sample displayed structure II with a lattice constant of 17.443(1) Å at 153 K.

Towards detailed combustor wall kinetics: an experimental and kinetic modeling study of hydrogen oxidation on Inconel

Gas-phase hydrogen combustion is ubiquitous in industrial processes, and the associated surface kinetics on heat-resistant alloys plays a crucial role in designing efficient low-carbon technologies. We conducted new temperature programmed reduction experiments to determine the reducibility of materials following an oxidation cycle. These experiments were modeled using a thermoconsistent multi-site microkinetic model for H2 heterogeneous oxidation on Inconels, which was validated against literature experiments. This competitive adsorption model considers iron bulk content, hydrogen spillover and subsurface oxygen migration on hydrogen surface oxidation kinetics. New X-ray diffraction experiments confirmed the postulated crystallographic structures in the Inconel samples, suggesting their presence on the surface scale. The phenomenological model was coupled with several state-of-the-art gas-phase oxidation mechanisms to assess gas/surface reactions interaction as a function of material and temperature. The results reveal a complex interaction in which surface removes H radicals from the gas-phase, while the Bradford (H2+OH) reaction converts OH into H2O, promoting water adsorption on Inconel. This interaction was found to give rise to gas-phase thermokinetic oscillations. The model predicts a non-monotonous effect of reactor area-to-volume ratio on reactivity and emphasizes the impact of Inconel composition on product selectivity. Overall, the multi-site model provides new insight into the contrasting reactivities among active sites, bridging the gap between material science and heterogeneous combustion modeling.

An overview on copper based heterometallic complexes in combination with d10 metal ions derived from N2O2 donor di-Schiff base ligands

A good number of heterometallic complexes based on various Cu(II) bound “metalloligands” of N2O2 donor di-Schiff bases and some of their reduced counterpart along with group 12 metal ions have been synthesized and characterized by different research groups in the literature. This review focuses on an overview of the synthetic strategies, X-ray crystallographic structures and a few important properties of these complexes. These have been discussed in three major sub-classes: Cu(II)-Zn(II), Cu(II)-Cd(II) and Cu(II)-Hg(II) heterometallic complexes. Judicious combinations of carbonyls and di-amines in an easy and effective manner gives 14 selected di-Schiff base ligands (symmetrical and unsymmetrical) with particular shape, geometry and denticity that direct the synthesis of these metal complexes totally or preferentially towards di-, tri- or poly-nuclear entities. Moreover, owing to their ability to assemble three metal ions in close proximity, these resulting oxido-bridged flexible coordination clusters adapted to various other ligand functionalities with particular shape and sometimes unusual coordination modes with certain degree of control. Such unique structural aspect of this system is immensely important in inorganic synthesis. The inherent flexibility of the di-oxido bridged trinuclear coordination cluster led to produce isomeric linear and bent structures that usually depend upon various factors e.g. the nature of the Schiff base, anionic co-ligands, temperature, solvent etc. The structural aspects of resulting discrete and polymeric self-assemblies have enriched the coordination library that extended to develop numerous heterometallic systems with significant applications and new scopes

The Binding Capacity of the Lead Phytochemical Molecule to Cancer Cell Target Proteins and its Potential Anticancer Properties with Respect to Standard Drugs

Molecular docking is an important tool for connecting molecular biological structure to computer-aided drug design. The purpose of this blind docking experiment is to compare the binding energies of these three drugs and to predict the most likely binding poses of a ligand with a known three dimensional structure of a protein. To substantiate our previous in vitro study findings, an in silico model was chosen to compare the binding properties of the three drugs. The work is entirely bioinformatics in nature. Blind docking was accomplished with the help of free software/(s). A comparison was made among the three drgus, used primarily in cancer treatment, namely, anastrazole, capecitabine and quercetin. In our in vitro study, these three drugs were extremely effective. CB dock-2 to blind dock, SwissTargetPrediction to choose the targets, PubChem and Protein Data Base to obtain 3D structures of ligand and target respectively were used. Absorption, Distribution, Metabolism, and Excretion (ADME) from SwissADME, drug likeness from MolSoft L.L.C. software, and Liponski’s rule was used to check the “Rule of five (RO5)”. The crystallographic structures have resolution values ranging from 1 Å to 3 Å. Lipinski’s rule of five, Swiss ADME and drug likeness were used to compare the three drugs. For all of the targets studied, quecetin appeared to have the highest AutoDock vina scores. To summarize the current findings and publicly available data, quercetin is chemoprotective and radioprotective to healthy/ normal cells and it can be used during cancer treatment.

Investigating grain and grain boundary effects on charge transport and dielectrics in BaCoxAlxFe12-2xO19 nanoferrites

This investigation centres on the sol-gel preparation of M-type barium hexagonal ferrite (M-BaFe12O19) incorporating Co2+ and Al3+ as dopants. X-ray diffraction (XRD) and field emission scanning electron microscopy (FESEM) were employed to assess the impact of dopants on the crystallographic structure and microstructure. The dielectric characteristics, electric modulus, impedance, and conductivity of the synthesized materials were evaluated at ambient temperature using an impedance analyzer. The structural analysis verified the presence of the hexagonal M-type crystal phase. Increasing dopant levels led to a reduction in lattice parameters, signifying unit cell shrinkage. FESEM imaging exposed the emergence of needle-shaped grains resulting from the doping process. Dielectric spectroscopy showed a decrease in both the dielectric constant (from 135.95 at x = 0.0 to 39.8) and the loss tangent (from 3.68 to 0.610) as dopant concentration increased. Conductivity exhibited relaxation at varying intervals, supported by the electric modulus spectra, which validated non-Debye relaxation behavior. Both relaxation time and AC conductivity diminished with higher dopant concentrations (from 0.000222 Ωm−1 to 0.000036 Ωm−1). The relaxation observed in conductivity and dielectric responses implies their contribution to the charge transport processes within BaCoxAlxFe12-2xO19. Electrochemical impedance spectroscopy (EIS) software was used to generate complex impedance plots, which aligned with the experimentally obtained impedance values for the synthesized compositions. Micrographs revealed a distribution of grains and grain boundaries that were consistent with calculated characteristics. This further substantiates the measured dielectric and electrical parameters.

Rietveld Refinement, Structural Morphology and Magnetic Properties of La0.57Sm0.1Sr0.33−xBaxMnO3 Manganite Nanoparticles

Lanthanide-based manganite perovskites due to their possible integration both in conventional Si-based electronics, and in innovative full-oxide electronics, have led to a massive resurgence of interest. The properties and applicability of these perovskites can be tailored with the interplay of foreign ion substation, and thus lot of efforts have been made by the researchers by using various types of compound combinations. In this work, a systematic study of Ba-substituted lanthanide of a chemical formula La[Formula: see text]Sm[Formula: see text]Sr[Formula: see text]Ba[Formula: see text]MnO3 (where, [Formula: see text], 0.05, 0.1, 0.20 and 0.33) was done and the manganites were synthesized by sol–gel auto-combustion method. The structural and magnetic properties were investigated by thermogravimetric/differential thermal analysis, which was also carried out to investigate the thermal stability of the prepared samples. X-ray diffraction (XRD) patterns, transmission electron microscopy (TEM), scanning electron microscopy (SEM) etc. were employed to investigate the crystallographic structure. XRD patterns and selected area electron diffraction patterns revealed the formation of single-phase La[Formula: see text]Sm[Formula: see text]Sr[Formula: see text]Ba[Formula: see text]MnO3 perovskite materials without any signature of secondary phases. Elemental composition of the synthesized samples was investigated by the energy dispersive analysis of X-ray analysis, which confirmed the expected stoichiometry of the prepared samples. TEM and SEM observations revealed the nano-crystalline nature of the prepared samples, where particle size obtained from TEM ranges from 40[Formula: see text]nm to 70[Formula: see text]nm. It has been found that structural and magnetic properties of the parent La[Formula: see text]Sm[Formula: see text]Sr[Formula: see text]MnO3 system were greatly affected by the Ba substitution.

From X-ray crystallographic structure to intrinsic thermodynamics of protein-ligand binding using carbonic anhydrase isozymes as a model system.

Carbonic anhydrase (CA) was among the first proteins whose X-ray crystal structure was solved to atomic resolution. CA proteins have essentially the same fold and similar active centers that differ in only several amino acids. Primary sulfonamides are well defined, strong and specific binders of CA. However, minor variations in chemical structure can significantly alter their binding properties. Over 1000 sulfonamides have been designed, synthesized and evaluated to understand the correlations between the structure and thermodynamics of their binding to the human CA isozyme family. Compound binding was determined by several binding assays: fluorescence-based thermal shift assay, stopped-flow enzyme activity inhibition assay, isothermal titration calorimetry and competition assay for enzyme expressed on cancer cell surfaces. All assays have advantages and limitations but are necessary for deeper characterization of these protein-ligand interactions. Here, the concept and importance of intrinsic binding thermodynamics is emphasized and the role of structure-thermodynamics correlations for the novel inhibitors of CA IX is discussed - an isozyme that is overexpressed in solid hypoxic tumors, and thus these inhibitors may serve as anticancer drugs. The abundant structural and thermodynamic data are assembled into the Protein-Ligand Binding Database to understand general protein-ligand recognition principles that could be used in drug discovery.

Molecular and structural basis of oligopeptide recognition by the Ami transporter system in pneumococci.

ATP-binding cassette (ABC) transport systems are crucial for bacteria to ensure sufficient uptake of nutrients that are not produced de novo or improve the energy balance. The cell surface of the pathobiont Streptococcus pneumoniae (pneumococcus) is decorated with a substantial array of ABC transporters, critically influencing nasopharyngeal colonization and invasive infections. Given the auxotrophic nature of pneumococci for certain amino acids, the Ami ABC transporter system, orchestrating oligopeptide uptake, becomes indispensable in host compartments lacking amino acids. The system comprises five exposed Oligopeptide Binding Proteins (OBPs) and four proteins building the ABC transporter channel. Here, we present a structural analysis of all the OBPs in this system. Multiple crystallographic structures, capturing both open and closed conformations along with complexes involving chemically synthesized peptides, have been solved at high resolution providing insights into the molecular basis of their diverse peptide specificities. Mass spectrometry analysis of oligopeptides demonstrates the unexpected remarkable promiscuity of some of these proteins when expressed in Escherichia coli, displaying affinity for a wide range of peptides. Finally, a model is proposed for the complete Ami transport system in complex with its various OBPs. We further disclosed, through in silico modelling, some essential structural changes facilitating oligopeptide transport into the cellular cytoplasm. Thus, the structural analysis of the Ami system provides valuable insights into the mechanism and specificity of oligopeptide binding by the different OBPs, shedding light on the intricacies of the uptake mechanism and the in vivo implications for this human pathogen.

CuO−La2O3 Nanocomposite as a Recyclable and Eco‐Friendly, Heterogeneous Catalyst for the One‐Pot Synthesis of Pyrano [2, 3‐c] Pyrazoles

AbstractIn this work, the unique performance of binary acid‐base CuO/La2O3 nanocomposite as a highly efficient heterogeneous catalyst was successfully examined for the one‐pot multicomponent synthesis of pyrano [2, 3‐c] pyrazole derivatives. The strong interactions between La and Cu had a profound effect on the catalytic activity of nanocatalysts. In addition, high selectivity, easy recovery, reusability, a very reasonable price, simple preparation and eco‐friendliness are other important advantages of this nanocatalyst. The characterized nanocomposite demonstrated excellent structural and morphological properties, leading to high catalytic efficiency. Characterization using Fourier Transform Infrared Spectroscopy (FT‐IR), X‐ray Powder Diffraction (XRD) confirmed crystallographic structure, and Field Emission Scanning Electron Microscopy (FE‐SEM) showed a spherical particle size of approximately 43 nm. Energy‐Dispersive X‐ray (EDX) analysis confirmed the composition of La, O, and Cu elements in the nanocomposite as 86.4 %, 13.5 %, and 0.2 %, respectively. The optimal condition for the synthesis resulted in a 98 % yield of pyrano [2, 3‐c] pyrazole derivatives under reflux with 0.02 g of CuO/La2O3 catalyst in a 10‐minute reaction time.

Crystallographic structure, antibacterial effect, and catalytic activities of fig extract mediated silver nanoparticles

Silver nanoparticles (Ag NPs) play a pivotal role in the current research landscape due to their extensive applications in engineering, biotechnology, and industry. The aim is to use fig (Ficus hispida Linn. f.) extract (FE) for eco-friendly Ag NPs synthesis, followed by detailed characterization, antibacterial testing, and investigation of bioelectricity generation. This study focuses on the crystallographic features and nanostructures of Ag NPs synthesized from FE. Locally sourced fig was boiled in deionized water, cooled, and doubly filtered. A color change in 45 mL 0.005 M AgNO3 and 5 mL FE after 40 min confirmed the bio-reduction of silver ions to Ag NPs. Acting as a reducing and capping agent, the fig extract ensures a green and sustainable process. Various analyses, including UV–vis absorption spectrophotometry (UV), X-ray diffraction (XRD), Fourier-transform infrared spectroscopy (FTIR), Field emission scanning electron microscopy (FESEM), Energy dispersive X-ray spectroscopy (EDX) and Transmission electron microscopy (TEM) were employed to characterize the synthesized nanoparticles, and Gas chromatography-mass spectrometry (GC-MS) analysis of the fig extract revealed the presence of eleven chemicals. Notably, the Ag NPs exhibited a surface plasmon resonance (SPR) band at 418 nm, confirmed by UV analysis, while FTIR and XRD results highlighted the presence of active functional groups in FE and the crystalline nature of Ag NPs respectively. With an average particle size of 44.57 nm determined by FESEM and a crystalline size of 35.87 nm determined by XRD, the nanoparticles showed strong antibacterial activities against Staphylococcus epidermidis and Escherichia coli. Most importantly, fig fruit extract has been used as the bio-electrolyte solution to generate electricity for the first time in this report. The findings of this report can be the headway of nano-biotechnology in medicinal and device applications.

Room-temperature serial synchrotron crystallography structure of Spinacia oleracea RuBisCO.

Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is the enzyme responsible for the first step of carbon dioxide (CO2) fixation in plants, which proceeds via the carboxylation of ribulose 1,5-biphosphate. Because of the enormous importance of this reaction in agriculture and the environment, there is considerable interest in the mechanism of fixation of CO2 by RuBisCO. Here, a serial synchrotron crystallography structure of spinach RuBisCO is reported at2.3 Å resolution. This structure is consistent with earlier single-crystal X-ray structures of this enzyme and the results are a good starting point for a further push towards time-resolved serial synchrotron crystallography in order to better understand the mechanism of the reaction.

Cyclodextrin-assisted supramolecular host-guest inclusion for durable and sustainable optoelectronics

Metal halide perovskites and organic nonlinear optical materials have showcased enormous potential in many kinds of optoelectronic applications, such as solar cells, light-emitting diodes, and patterned displays. However, further enhancement of optoelectronic performances has been largely limited by the intractable issues of these materials including high defect densities, unstable crystallographic structure, harsh fabrication conditions, and unfavorable biocompatibility and environmental sustainability. Encouragingly, several recent works have demonstrated an effective supramolecular host-guest inclusion strategy could ideally address abovementioned concerns by nesting optoelectronic materials within the cavities of cyclodextrin molecules and their analogs. Specifically, the supramolecule hosts embedded with multiple functional groups and/or crosslinked networks could robustly interact with those optoelectronic materials, which play multifaceted roles in terms of chemical chelation, spatial confinement, structural stabilization, defect passivation, ion immobilization and compensation, thus resulting in comprehensive enhancement of optoelectronic performances and sustainability. The current challenging issues and potential solutions are also discussed to provide a roadmap for achieving more durable and sustainable optoelectronics toward practical applications and real commercialization.