Copepods Research Articles

Cryptic diversity and speciation in an endemic copepod crustacean Harpacticella inopinata within Lake Baikal.

Ancient lakes are hotspots of species diversity, posing challenges and opportunities for exploration of the dynamics of endemic diversification. Lake Baikal in Siberia, the oldest lake in the world, hosts a particularly rich crustacean fauna, including the largest known species flock of harpacticoid copepods with some 70 species. Here, we focused on exploring the diversity and evolution within a single nominal species, Harpacticella inopinata Sars, 1908, using molecular markers (mitochondrial COI, nuclear ITS1 and 28S rRNA) and a set of qualitative and quantitative morphological traits. Five major mitochondrial lineages were recognized, with model-corrected COI distances of 0.20-0.37. A concordant pattern was seen in the nuclear data set, and qualitative morphological traits also distinguish a part of the lineages. All this suggests the presence of several hitherto unrecognized cryptic taxa within the baikalian H. inopinata, with long independent histories. The abundances, distributions and inferred demographic histories were different among taxa. Two taxa, H. inopinata CE and H. inopinata CW, were widespread on the eastern and western coasts, respectively, and were largely allopatric. Patterns in mitochondrial variation, that is, shallow star-like haplotype networks, suggest these taxa have spread through the lake relatively recently. Three other taxa, H. inopinata RE, RW and RW2, instead were rare and had more localized distributions on either coast, but showed deeper intraspecies genealogies, suggesting older regional presence. The rare taxa were often found in sympatry with the others and occasionally introgressed by mtDNA from the common ones. The mitochondrial divergence between and within the H. inopinata lineages is still unexpectedly deep, suggesting an unusually high molecular rate. The recognition of true systematic diversity in the evaluation and management of ecosystems is important in hotspots, as it is everywhere else, while the translation of the diversity into a formal taxonomy remains a challenge.

Physiological and molecular responses of the copepods Acartia clausi and Acartia tonsa to nickel nanoparticles and nickel chloride

Nickel compounds in dissolved form or as nanoparticles may affect planktonic invertebrates in marine ecosystems. Here, we assessed the physiological (naupliar mortality, egg production, egg hatching success) and molecular (quantitative gene expression) responses of the crustacean copepods Acartia clausi (indigenous Mediterranean species) and Acartia tonsa (model organism in ecotoxicology), to nickel nanoparticles (NiNPs) and nickel chloride (NiCl2), over time. We also measured NPs size and the temporal release of Ni ions in aqueous solution, through dynamic light scattering (DLS) and inductively coupled plasma-mass spectrometry (ICP-MS), respectively.Nauplii of A. clausi were highly vulnerable to NiCl2 in the 48 h acute test, with an EC50 in the range of Ni concentrations measured in polluted waters. Females of both species exhibited a decreased egg production and hatching success after the 4-day exposure to NiNPs. Molecular responses in A. clausi incubated in NiNPs and NiCl2 showed a stronger up- or down-regulation, compared to A. tonsa, of genes associated with detoxification (phospholipid-hydroperoxide glutathione peroxidase, glutathione-S-transferase sigma), oxidative stress (superoxide dismutase), nervous system functioning (acetylcholinesterase), and oogenesis (vitellogenin).In conclusion, new information was here obtained on the effects of different forms of nickel on physiological and molecular responses of A. clausi, that could help to identify biomarker genes of exposure to be used as early-warning indicators. Our results also highlighted the need of employing indigenous copepod species to better evaluate the ecotoxicological impact of pollutants in different geographical area.

Folate-Mediated One-Carbon Metabolism in the Crustacean Copepod Calanus finmarchicus: Identification of Transcripts and Relative Expression across Development

Folate, also known as vitamin B9, plays a crucial role in the one-carbon (1C) metabolism, a conserved pathway from microbes to humans. The 1C metabolism, consisting of the folate and methionine cycles, is essential in many biological processes such as nucleotide and protein biosynthesis, cell proliferation, and embryonic development. Despite its functional role, little is known about the 1C metabolism in crustaceans. As part of an ongoing effort to characterize important pathways in Calanus finmarchicus, the biomass-dominant zooplankton in much of the North Atlantic Ocean, we identified transcripts encoding the 1C metabolism enzymes. Using an in silico workflow consisting of a transcriptome mining, reciprocal blasts, and structural analyses of the deduced proteins, we identified the entire set of enzymes in both cycles. The majority encoded for full-length proteins and clustered with homologs from other species. Stage-specific expression was reported, with several transcripts showing high expression in the naupliar stage (e.g., 10-FTHFD, SHMT2) while some methyltransferases (e.g., BHMT, SHMT, DNMT) were more expressed in adults. Overall, this study provides a set of genes which can be used as potential biomarkers of development and reproduction and can be tested in other zooplankters to assess ocean health status monitoring.

Regional climate contributes more than geographic distance to beta diversity of copepods (Crustacea Copepoda) between caves of Italy

Despite the study of subterranean biodiversity facing harsh sampling and mapping challenges, the huge diversity of taxa, ecological adaptations and evolutionary trajectories in subterranean environments is gaining increasing attention. Yet, the spatial and environmental factors driving the composition of groundwater communities are still poorly understood. To partially fill this knowledge gap, we collected copepod crustaceans from 12 caves along the Italian peninsula between 2019 and 2022, sampling each cave twice. The resulting presence-absence data were analysed to assess: (i) between-cave taxonomic beta diversity, also partitioning between turnover and nestedness-resultant dissimilarity; (ii) the relative weight of geographic distance and climatic differences in shaping observed beta diversity. Seventy-one species of copepods were collected overall. Pairwise beta diversity was high for most pairs of caves, with turnover being the major component. Geographic distance-decay models partially explained total beta diversity and turnover patterns. However, in Generalized Dissimilarity Models (GDM), including surface climatic conditions as predictors, the contribution of seasonal temperature averages was generally higher than that of geographic distance. Further, the explanatory and predictive performance of the GDMs notably increased, along with temperature contribution, when widening the spatial extent from which climate data were gathered. Our results confirmed a high spatial turnover in groundwater copepods’ assemblages and strengthened the link between regional climate and subterranean biodiversity.

Diving into Diversity: Copepod Crustaceans in Octocoral Associations

This research provides an extensive analysis of the biodiversity and distribution patterns of copepod crustaceans associated with octocoral species. A comprehensive dataset comprising 966 records pertaining to 233 copepod species, encompassing 54 genera, 18 families, and 3 orders, was compiled from 92 scientific papers published between 1858 and 2023, and updated as open data to GBIF. These copepods were found to be closely associated with 183 octocoral species, representing 72 genera and 28 families. The analysis revealed a total of 393 distinct interspecific associations between copepods, classified under the orders Cyclopoida, Harpacticoida, and Siphonostomatoida, and diverse octocorals. Approximately 60% of these associations were reported only once in the literature, which poses challenges to assessing the level of host specificity among the majority of copepod species linked with octocorals. Notably, over 91% of the recorded copepod species were found at depths not exceeding 30 m, with only four copepod species reported at greater depths surpassing 500 m. The presence of these symbiotic copepods was documented across 215 sampling sites situated within 8 of the 12 defined marine ecoregions, with particular attention to the Western Indo-Pacific, Central Indo-Pacific, and Temperate Northern regions. Despite the comprehensive examination of available data, this study highlights substantial gaps in our comprehension of copepod crustacean diversity and distribution in association with octocorals. Moreover, crucial information concerning symbiotic copepods is conspicuously absent for approximately 94% of potential octocoral host species. These disparities emphasize the imperative need for further scientific inquiry to unveil the intricacies of symbiotic relationships and to contribute to a more holistic understanding of copepod–octocoral associations.

Clinico-histopathological and phylogenetic analysis of protozoan epibiont Epistylis wuhanensis associated with crustacean parasite Lernaea cyprinacea from ornamental fish in Iran

Parasitic infestations are one of the most concerning problems limiting ornamental fish farming. In addition to the direct economic losses due to the major mortalities, parasites may significantly negatively impact the body shape, coloration, growth rate, and health condition of the fish. The results of the study highlight the importance of comprehensive parasitological analysis in the diagnosis and treatment of parasitic infections in ornamental fish farms. The presence of multiple parasites in the affected fish emphasizes the need for effective biosecurity measures, such as extending the quarantine period for newly imported fish, closely monitoring fish populations, and implementing isolation units to prevent the spread of infections. By implementing these preventative measures, ornamental fish farmers can reduce the risk of parasitic infections and ensure the health and well-being of their fish populations. This, in turn, can lead to increased profitability and sustainability for their business. Overall, the current study aimed to conduct a clinical, histopathological, and phylogenetic analysis of the epibiont ciliated protozoan Epistylis wuhanensis and the copepod crustacean Lernaea cyprinacea in a freshwater ornamental fish farm in Iran. Furthermore, it provides valuable insights into the prevalence and impact of parasitic infections in ornamental fish farms and underscores the need for continued research and the development of effective preventative measures to address this issue. A total of 60 symptomatic freshwater ornamental fish, including 30 guppy (Poecilia reticulata) and 30 sailfin molly (Poecilia latipinna), were packed in polyethylene bags filled with oxygenated pond water and transported to the Ornamental Fish Clinic, Faculty of Veterinary Medicine, University of Tehran, for parasitological analysis. Following the clinical examination, histopathological analysis was performed on 10% NBF (neutral buffered formalin)-fixed samples from affected tissues, including the skin, skeletal muscle, and liver, to identify any pathological changes associated with the parasitic infections. Furthermore, the DNA was extracted from the 99% ethanol-fixed samples using a commercial DNA extraction tissue kit (SinaPure DNA, Iran), and PCR was performed using Peri18S-F1 (5′-ACC TGG TTG ATC CTG CCA GT-3′) and Peri18S-R1 (5′-TGC AGG TTC ACC TAC GGA AA-3′) (first reaction), and Peri18S-F2 (5′-CCG CGG TAA TTC CAG CTC-3′) and Peri18S-R2 (5′-GAT CCC CTA ACT TTC GTT CTT GA-3′) (second round) primers for the identified parasites. Finally, the PCR products were sequenced using Sanger dideoxy sequencing methods, and the resulting sequences were compared to sequences in the BLAST search program to provide a comprehensive picture of the current parasite-based disorder. The crustacean L. cyprinacea and the epibiont sessilid E. wuhanensis were identified in the examined ornamental guppy (6/30) and sailfin molly (6/30), with an overall parasitic prevalence of 20.00% (12/60). Ciliates were found in all tissue lesions but not in fish without lesions. A great number of the ciliated protozoan E. wuhanensis were found attached to the integumentary area of L. cyprinacea. Microscopically, oval to round granulomatous lesions were observed in cutaneous and skeletal muscles. Lymphoplasmacytic dermatitis and myositis were also observed. The crustacean L. cyprinacea serves as a mechanical vector for E. wuhanensis infection and spreads the disease in ornamental fish farming operations. For the first time in Iran, we successfully presented diagnostic morphological and molecular data on sessilids isolated from L. cyprinacea. Based on the findings of the current study, such parasitic infections may cause significant economic losses following invasion of the integument area of fish, eventually leading to death, if treatment is neglected or inadequate. Furthermore, the findings of the analysis were used to develop effective diagnostic approaches for the affected fish, as well as recommendations for improved health conditions to prevent future outbreaks of parasitic infections. However, further research is needed to determine the precise mechanisms of crustacean attachment and host-crustacean-peritrich protozoan interactions. Furthermore, the direct and indirect effects of various environmental factors on the emergence and spread of the current disease should be considered.

Assessing spatial and temporal changes in diversity of copepod crustaceans: a key step for biodiversity conservation in groundwater-fed springs

Despite the close attention springs have received from a hydrologic perspective and as biodiversity hotspots, the multiple dimensions of spring meiofaunal assemblage diversity are still poorly investigated. Knowledge of beta diversity patterns and drivers can inform and improve management decisions on biodiversity conservation. Here, we analyzed beta diversity of copepod assemblages in karst springs in Central Italy by focusing on: 1) relative contributions of turnover and nestedness components to taxonomic and phylogenetic beta diversity; 2) temporal variation of species richness and beta diversity within and between the target springs in conjunction with models of the influence of physical-chemical parameters on within-spring diversity changes; 3) expected risk of habitat loss due to variation in groundwater recharge under climate change. To this end, we gathered data from 168 samples collected in four karst springs from 2004 to 2016. Overall, we found 48 copepod species, 22 of which are obligate groundwater dwellers while the remaining 26 usually occur in surface freshwaters. All springs showed significant changes in taxonomic and phylogenetic beta diversity over time. Total beta diversity was high for both the taxonomic and phylogenetic dimensions, and turnover was the main component. Inter-site variability in dissolved oxygen explained a noticeable part of temporal variation in beta diversity, likely reflecting the role of microhabitat heterogeneity in shaping site-specific assemblages. However, most of the temporal variation in species richness and beta diversity remained unexplained, suggesting a major role of other factors, such as seasonal discharge variations. Modelling of recharge rates for all the four springs over 2001–2020 suggested a potential >40% recharge deficit under dry conditions. Moreover, Cellular Automata-based modelling of rainfall over the Gran Sasso-Sirente hydrogeologic unit (feeding three of the four springs) predicted an overall precipitation decrease in the 2081–2095 period. Such changes could produce severe effects on springs’ microhabitats and related communities. Our results indicate that partitioning beta diversity, monitoring its temporal changes and assessing its environmental drivers are critical to evidence-based conservation of springs. Particularly, the high species turnover we have observed suggests that conservation strategies should seek to preserve as many microhabitats as possible within and among karst springs.

Environmental factors shaping copepod distributions in cave waters of the Lessinian unsaturated karst (NE-Italy)

The unsaturated karst represents a transitional zone connecting the land surface to the water table of the underlying saturated zone through percolating water and small perched aquifers. It constitutes a significant groundwater reservoir and hosts a high biodiversity of specialized and endemic species. Whereas investigating this ecotone can shed light on the invertebrate diversity of the whole karst system, ecological studies in the unsaturated karst have been hampered by access, mapping, and sampling challenges. We studied the unsaturated zone of 52 caves in the Lessinian Massif (NE-Italy), which is dominated by carbonate rocks interspersed with spot areas composed mainly of igneous rocks. Our aim was to understand which ecological and historical factors may have shaped the distribution of the groundwater crustacean copepods at a regional spatial scale in the Lessinian unsaturated karst. We collected 33 species belonging to the orders Harpacticoida and Cyclopoida. Species richness estimators and related species accumulation curves suggest an exhaustive sampling effort. A hydrologic analysis performed in a Geographic Information System environment divided the study area in three distinct drainage basins: Eastern Lessini, Lessinian Core, and Western Lessini. Regression analyses indicated that richness of non-stygobitic copepods (i.e., surface-water species which exploit groundwater for different purposes) was mainly driven by inter-basin differences. Richness of stygobitic copepods (i.e., obligate groundwater dwellers) was instead strongly related to lithological features and responded negatively to surface thermal variability. Next, we used a kernel density estimation to spatially explore diversity patterns in the area. The highest density of stygobitic harpacticoids was identified in the Eastern Lessinian basin, which is lithologically more heterogeneous and surrounded by practically non-aquiferous igneous rocks that may limit dispersal. Conversely, the Western Lessinian basin hosted a high density of stygobitic cyclopoid species. This spatial pattern suggests different colonization pathways for the two taxa, with a strong effect of igneous rocks in hampering dispersal of most harpacticoids. Lithological barriers seemingly did not affect non-stygobitic copepods, which were found across the whole area. Altogether, these results emphasize the key role played by the interaction of hydrological features, climate, and lithology in determining different copepod biodiversity patterns in the unsaturated karst.

Exploring the Community Structure of Plankton in the Maricultures Sites of Kodek Bay, Lombok Island

Mariculture is considered a future economic source for Indonesia. However, this practice may degrade the surrounding ecosystem by decreasing the water quality, including the plankton community. This study aimed to determine the community structure of plankton (phytoplankton and zooplankton) in the mariculture sites. Study sites were selected based on the mariculture activities of the Research Center for Marine and Terrestrial Bioindustry (PRBILD-BRIN) located in Kodek Bay, Lombok Island. Samplings were conducted in February 2021, zooplankton samples were collected horizontally by towing a 100 μm plankton net using a boat, whereas phytoplankton was collected using a 20 μm plankton net horizontally. The plankton samples were preserved with 4% formaldehyde, identified, and counted in a Sedgwick Rafter cell counter using an Olympus CX21 (10x). Results demonstrated that zooplankton was dominated by genera from the Subclass Copepoda (Temora sp., Microsetella sp., Euterpina sp., Oithona sp., Acartia sp., and Onceae sp.) that were significantly more abundant at Sites 1 and 2 than those at Sites 3 and 4. The diversity levels were moderate at all sites, except at site 1, which Temora dominated. Phytoplankton was mainly composed of Bacillariophyceae, followed by Dinophyceae, Chlorophyceae, and Conjugatophyceae, with no significant difference in abundance at all sites. The diversity levels were low for all phytoplankton taxa at all sites except at site 2, where Bacillariophyceae and Dinophyceae equally composed the community. It is suggested that the mariculture organisms may shape these phytoplankton and zooplankton community structures by recycling particular nutrients.

Zooplankton exposure to microplastic contamination in a estuarine plume-influenced region, in Northeast Brazil

This work describes the spatio-temporal distribution of suspected plastic and microplastic (MP) particles in estuarine plumes and analyzes the microplastic/zooplankton ratio. Subsurface hauls with a conical-cylindrical net were deployed in the coastal area of Tamandare (Pernambuco, Brazil), covering the plume of two rivers and a bay adjacent to coral reefs. A total of 2079 suspected plastic particles were detected, mostly fibers and fragments (>60%). Organic matter digestion was made using a 30% hydrogen peroxide solution, of which approximately 50% of suspected particles were validated as MPs. The average MP abundance was significantly higher during the high rainfall season (53.8 ± 89.6 and 18.8 ± 32.3 particles/m³, respectively), with higher values registered in the plume area (108.9 ± 158.5 and 44.6 ± 55.5 particles/m³). Polymer identification using FT-IR confirmed that suspected particles were mainly polypropylene, polyamide, and polyurethane. These results confirm the hypothesis of a temporal transport variation of MPs from the river to the coastal environments, particularly since the plume influences debris input. Eleven animal phyla were identified, and the subclass Copepoda was predominant (90%), particularly the nauplius stage (70%). Over 70% of verified MPs range between 20 and 2000 μm, equivalent to the most common size of zooplanktonic organisms. Results support that coastal areas near estuarine plumes are exposed to microplastic contamination, affecting species dependent on zooplankton in marine coastal food webs.

Diet and feeding of juvenile common two-banded sea bream, Diplodus vulgaris (Teleostei: Sparidae), in the eastern central Adriatic Sea

Abstract The diet and feeding of juvenile common two-banded sea bream, Diplodus vulgaris, in the eastern central Adriatic Sea was studied to better understand local ecosystem dynamics in this region. Stomach contents of 140 individuals with total length (TL) between 22 and 106 mm, collected by small beach seines from February to November, were analysed. Food items identified in stomachs belonged to 16 prey groups: Copepoda, Gastropoda, Teleost eggs, Ostracoda, Polychaeta, Bivalvia, unidentified Crustacea, Amphipoda, Decapoda, Cumacea, Echinoidea, Anisopoda, Euphausiacea, Mysidacea, Branchiopoda and Isopoda. Overall, planktonic copepod crustaceans were the most important prey group (percentage index of relative importance, %IRI = 78.9), followed by gastropods (%IRI = 14.9). All other prey groups had much lower %IRI values and thus were of less importance. Fish size was an important factor influencing food composition. Planktonic copepods were the most important prey in juveniles of smaller sizes (up to 76 mm TL), whereas large-sized juvenile individuals (>76 mm TL) mainly consumed benthic prey, such as gastropods, polychaetes and bivalves. Feeding intensity was very high as indicated by the low vacuity index.

Progress Toward Global Eradication of Dracunculiasis - Worldwide, January 2021-June 2022.

Dracunculiasis (Guinea worm disease), caused by the parasite Dracunculus medinensis, is acquired by drinking water containing small crustacean copepods (water fleas) infected with D. medinensis larvae. Recent evidence suggests that the parasite also appears to be transmitted by eating fish or other aquatic animals. About 1 year after infection, the worm typically emerges through the skin on a lower limb of the host, causing pain and disability (1). No vaccine or medicine is available to prevent or treat dracunculiasis. Eradication relies on case containment* to prevent water contamination and other interventions to prevent infection, including health education, water filtration, treatment of unsafe water with temephos (an organophosphate larvicide), and provision of safe drinking water (1,2). CDC began worldwide eradication efforts in October 1980, and in 1984 was designated by the World Health Organization (WHO) as the technical monitor of the Dracunculiasis Eradication Program (1). In 1986, with an estimated 3.5 million cases† occurring annually in 20 African and Asian countries§ (3), the World Health Assembly called for dracunculiasis elimination. The Guinea Worm Eradication Program (GWEP),¶ led by The Carter Center and supported by partners that include WHO, UNICEF, and CDC, began assisting ministries of health in countries with endemic disease. In 2021, a total of 15 human cases were identified and three were identified during January-June 2022. As of November 2022, dracunculiasis remained endemic in five countries (Angola, Chad, Ethiopia, Mali, and South Sudan); cases reported in Cameroon were likely imported from Chad. Eradication efforts in these countries are challenged by infection in animals, the COVID-19 pandemic, civil unrest, and insecurity. Animal infections, mostly in domestic dogs, some domestic cats, and in Ethiopia, a few baboons, have now surpassed human cases, with 863 reported animal infections in 2021 and 296 during January-June 2022. During the COVID-19 pandemic all national GWEPs remained fully operational, implementing precautions to ensure safety of program staff members and community members. In addition, the progress toward eradication and effectiveness of interventions were reviewed at the 2021 and 2022 annual meetings of GWEP program managers, and the 2021 meeting of WHO's International Commission for the Certification of Dracunculiasis Eradication. With only 15 human cases identified in 2021 and three during January-June 2022, program efforts appear to be closer to reaching the goal of eradication. However, dog infections and impeded access because of civil unrest and insecurity in Mali and South Sudan continue to be the greatest challenges for the program. This report describes progress during January 2021-June 2022 and updates previous reports (2,4).

Владислав Монченко — видатний зоолог та його внесок у розвиток зоологічних колекцій

The article is dedicated to the memory of the outstanding scientist-zoologist Vladyslav Ivanovich Monchenko. A brief outline of the main events of the scientist’s activity is given. V. I. Monchenko’s scientific achievements include 191 works published during his lifetime (among them 8 monographs and textbooks), almost 50 newly described taxa of copepod crustaceans and their parasites, and a unique collection of Copepoda. Fundamen-tal generalisations carried out by V. I. Monchenko are recognised by scientists far beyond Ukraine. Those in-clude the life cycles of copepods and the mechanisms of their regulation, as well as the analysis of the mor-phological evolution of this group, including experiments on the presence of cryptic species among cyclopods. His contribution to the biogeography of the Ponto–Caspian Basin are also important. The scientist’s contribu-tion to the development of the National Museum of Natural History (NMNH) NAS of Ukraine is shown. Among the valuable collection specimens transferred by V. Monchenko to the NMNH are various sponges, sea anemones, and ascidians from the Southern Ocean, sailfish and jellyfish from the Pacific Ocean, crustaceans (Brucerolis bromleyana) and corals from the coast of New Zealand. The collection also includes 39 specimens of exotic gastropod and bivalve molluscs, collected in various parts of the Indian and Atlantic oceans and in bodies of fresh water of oceanic islands, as well as a skeleton of a female Cape petrel (Daption capense). The fish exhibition includes a mounted Copper shark (Carcharhinus brachyurus) caught by a researcher in the Pa-cific Ocean off the coast of Japan, and a wet specimen of a pilot fish (Naucrates ductor) from the Pacific Ocean. Sixty specimens of 17 species of fish from the Pacific Ocean and the Black Sea are stored in the scien-tific collection of the NMNH. The scientist received high recognition for his research and contributions into the development of science and scientific schools, he was elected a corresponding member of the NAS of Ukraine (2000), an academician of the NAS of Ukraine (2003), became a laureate of the D. K. Zabolotny Prize (1975) and the State Prize of Ukraine in the Field of Science and Technology (2007), and received the honorary title ‘Honoured Worker of Science and Technology of Ukraine.’

Polycyclic Aromatic Hydrocarbons and Polychlorinated Biphenyls in Seawater, Sediment and Biota of Neritic Ecosystems: Occurrence and Partition Study in Southern Ligurian Sea

The Mediterranean Sea is subjected to a high anthropic pressure, which determines direct or indirect discharges of persistent organic pollutants deriving from intensive industrial activities. These compounds could easily enter and contaminate the whole marine compartment, with possible transfers (and contamination) among water, sediment and biota. Based on the above-mentioned assumptions, in this work we studied the presence of 16 polycyclic aromatic hydrocarbons (PAHs) and 14 dioxin and non-dioxin-like polychlorinated biphenyls (PCBs) in the neritic protected marine area of the Southern Ligurian Sea, affected by the impact of human activities. The study was focused on the possible partition of micropollutants within seawater, sediment and zooplankton. Results showed that both seasonal and anthropic causes strongly affect contaminant transfer behaviors, with summertime periods more impacted by PAH and PCB contamination. Regarding the PAH contamination, low molecular weight congeners were mainly detected in the target matrices, revealing concentrations up to 1 µg/L in seawater (anthracene), 250 µg/Kg in sediments (benzo[b]fluoranthene) and 2.3 mg/Kg in carnivorous copepods. Concerning PCBs, only few congeners were detected in the matrices studied. To better understand the occurrence of preferential bioaccumulation pathways in zooplankton, partition studies were also performed in several taxa (hyperbenthic Isopoda, holoplanktonic crustacean copepods and ichthyoplankton) through the calculation of BAF values, observing that both living and feeding habits could influence the bioaccumulation process.

Аккумулирующая способность гидробионтов и взвешенного вещества в отношении радиоизотопов плутония в прибрежных акваториях (Севастопольская бухта, Черное море)

The accumulation ability of marine ecosystems biotic and abiotic components is one of the water masses self-purification mechanisms. Hydrobionts and suspended matter accumulate anthropogenic substances from the water, thereby contributing to its self-purification. It is important to study the quantitative characteristics of this process in order to assess the ecological state of aquatic ecosystems and a possible impact of anthropogenic substances on marine organisms and ensure their protection. Anthropogenic substances entering the water systems include technogenic radionuclides. Among them, the plutonium radioisotopes 239+240Pu occupy a special place. Being long-lived alpha-emitting radioisotopes, 239+240Pu are especially dangerous if they enter inside the organism. Therefore, it is required to assess hydrobionts accumulation ability in relation to these radioisotopes, and the dose loads that they create on marine biota. This study was carried out in Sevastopol Bay of the Black Sea which was subjected to pollution by anthropogenic radionuclides and is currently serving as a model object for studying the redistribution of 239+240Pu in marine coastal ecosystems. This work was aimed to assess the accumulation ability of hydrobionts and suspended matter in relation to plutonium and the dose loads created by 239+240Pu on marine organisms, representatives of different trophic levels, based on determining the 239+240Pu activity concentration in the components of the bay ecosystem. Representatives of multicellular brown and green algae, bivalves, demersal and pelagic fish, crabs and zooplankton of the subclass Copepoda were studied. The 239+240Pu activity concentration in the ecosystem components was determined by standard radiochemical methods and alpha-spectrometry. The accumulation ability of hydrobionts and suspended matter in relation to 239+240Pu was estimated by the concentration factors (Cf). The dose loads on marine biota were calculated using the ERICA Assessment Tool 2.0 software package. It was found that suspended matter has the highest accumulation ability among the studied components (Cf 239+240Pu – n·105), as well as bivalve mollusks, perennial multicellular brown algae and pelagic predatory fish among the studied hydrobionts (Cf 239+240Pu – n·103). It is concluded that the processes of plutonium redistribution in the bay lead to its deposition in the bottom sediments and long-term biotic components of the bay. At the same time, 239+240Pu are not removed from the ecosystem and, under certain conditions, they can enter the water as secondary pollution. The critical links of the trophic chain in the bay ecosystem according to the dose loads are determined for the link of primary producers: phytoplankton and perennial brown algae, for consumers of the first order – bivalve mollusks, for consumers of the second order – pelagic predatory fish. The paper contains 5 Figures, 1 Tables, and 48 References.

Assessment of ecological conditions for growing the market-size fish in the Kantivka fattening pond (Khmelnychchyna, Ukraine)

Abiotic (water quality) and biotic (Phyto-, zooplankton and benthos) factors in the Kantivka fattening pond the Khmelnitskrybhosp Private Joint-Stock Company were studied during the vegetation seasons in 2020. The aquaculture objects in the pond are cyprinid fish species (carp, grass carp, silver carp, pike). The ecological conditions of the pond were evaluated as good enough for the fish fattening purpose. The critical water quality parameters were following traditional values accepted for fish farming in Ukraine. The taxonomic composition of plankton and benthos was represented by widespread and Ubiquiti species mainly. The 124 species and intraspecies taxa of microalgae and the 34 species of zooplankton were identified in the Kantivka fattening pond. The mean abundance and biomass for the phytoplankton were 183.8 million cells/dm3 and 35.61 mg/dm3, respectively; for zooplankton, those were as 336600 ind/m3 and 14.83 g/m3, and for zoobenthos, those values were as 309.6 ind/m2, and biomass as 5.84 g/m2. Such parameters of natural forage base correspond to the optimal values for natural fish food according to fish farming standards in Ukraine. In the late summer, the free-living copepod stages and mature adult females of the parasitic copepod crustacean Ergasilus sieboldi Nordmann were registered in plankton. This copepod causes the invasion of fish diseases like infection and destruction of gill arches, which leads to a severe disturbance in fish respiration, emaciation, delaying in growth, and the potential death of commercial fish even. The development of natural fish food in the Kantivka fattening pond is shown an intensive level of biomass and abundance of phytoplankton, zooplankton, and zoobenthos. It is considered sufficient to meet the natural nutritional needs (in combination with artificial feeding) for older age groups of the cultivated cyprinid fish species.

Patterns of Cryptic Diversity and Phylogeography in Four Freshwater Copepod Crustaceans in European Lakes

Comparative phylogeography has become a powerful approach in exploring hidden or cryptic diversity within widespread species and understanding how historical and biogeographical factors shape the modern patterns of their distribution. Most comparative phylogeographic studies so far focus on terrestrial and vertebrate taxa, while aquatic invertebrates (and especially freshwater invertebrates) remain unstudied. In this article, we explore and compare the patterns of molecular diversity and phylogeographic structure of four widespread freshwater copepod crustaceans in European water bodies: the harpacticoids Attheyella crassa, Canthocamptus staphylinus and Nitokra hibernica, and the cyclopoid Eucyclops serrulatus, using sequence data from mtDNA COI and nuclear ITS/18S rRNA genes. The three taxa A. crassa, C. staphylinus and E. serrulatus each consist of deeply diverged clusters and are deemed to represent complexes of species with largely (but not completely) non-overlapping distributions, while in N. hibernica only little differentiation was found, which may however reflect the geographically more restricted sampling. However, the geographical patterns of subdivision differ. The divisions in A. crassa and E. serrulatus follow an east–west pattern in Northern Europe whereas that in C. staphylinus has more of a north–south pattern, with a distinct Fennoscandian clade. The deep mitochondrial splits among populations of A. crassa, C. staphylinus and E. serrulatus (model-corrected distances 26–36%) suggest that divergence of the lineages predate the Pleistocene glaciations. This study provides an insight into cryptic diversity and biogeographic distribution of freshwater copepods.

The Use of Zooplankton Metrics to Determine the Trophic Status and Ecological Potential: An Approach in a Large Mediterranean Watershed

In the European Water Framework Directive, zooplankton was not included as a Biological Quality Element despite its important place in the aquatic trophic web. In the present study on zooplankton abundances and biomasses, we used several metrics to test their ability to detect differences among trophic statuses and ecological potential levels, and collected a large sum of data in more than 60 reservoirs at Ebro watershed, on more than 300 sampling occasions over 10 years. Our results indicate that most zooplankton metrics are correlated to environmental variables that determine reservoirs’ trophic states, especially chlorophyll a and total phosphorus. The metrics with better sensitivity to differentiate trophic states and ecological potential levels were ZOO (total zooplankton), LZOO (large zooplankton), CLAD (cladocerans), and ZOO:CHLA (zooplankton:chlorophyll a ratio). Microcrustacean metrics such as DAPHN (Daphnia), COP (copepods), CYCLO (cyclopoids), and CALA (calanoids) were good at differentiating between high and low water quality in trophic status (oligotrophic–eutrophic) and ecological potential (good or superior–moderate). Thus, zooplankton can be used as a valuable tool to determine water quality; we believe that zooplankton should be considered a Biological Quality Element within Water Framework Directive monitoring programs for inland waters.

Integrative taxonomy of a new species of Therodamas (Ergasilidae) infecting the Amazonian freshwater fish Leporinus fasciatus (Anostomidae).

Crustaceans of the subclass Copepoda are an important component of the invertebrate aquatic fauna. They occur in all aquatic environments and include some representatives that are free-living organisms and others that have a parasitic lifestyle. The genus Therodamas comprises marine and freshwater copepods whose females are parasites of fish in their adult phase, with only seven species described so far. During a field survey of fish parasites in the Jari River, a large tributary of the Amazon River system, in Brazil, we found a new species of the genus Therodamas infecting Leporinus fasciatus. Therodamas longicollum n. sp. is the second strictly freshwater species known. Phylogenetic analysis showed that the new species is grouped in the family Ergasilidae, and divergence estimates showed that T. longicollum n. sp. diverged from its ancestor at around 66.34Ma, in the late Upper Cretaceous. Therodamas longicollum n. sp. differs from its congeneric in that it does not have lobes and/or expansion of the anterior neck region. Besides describing a new Therodamas species, thereby increasing the diversity of the genus to eight species, this study points out the existence of a lineage of these copepods that has adapted to the freshwater environment of the Amazon. This study also corroborates the genus Therodamas as part of the family Ergasilidae.

The FTZ-F1 gene encodes two functionally distinct nuclear receptor isoforms in the ectoparasitic copepod salmon louse (Lepeophtheirus salmonis).

The salmon louse, Lepeophtheirus salmonis, is an ectoparasitic crustacean that annually inflicts substantial losses to the aquaculture industry in the northern hemisphere and poses a threat to the wild populations of salmonids. The salmon louse life cycle consists of eight developmental stages each separated by a molt. Fushi Tarazu Factor-1 (FTZ-F1) is an ecdysteroid-regulated gene that encodes a member of the NR5A family of nuclear receptors that is shown to play a crucial regulatory role in molting in insects and nematodes. Characterization of an FTZ-F1 orthologue in the salmon louse gave two isoforms named αFTZ-F1 and βFTZ-F1, which are identical except for the presence of a unique N-terminal domain (A/B domain). A comparison suggest conservation of the FTZ-F1 gene structure among ecdysozoans, with the exception of nematodes, to produce isoforms with unique N-terminal domains through alternative transcription start and splicing. The two isoforms of the salmon louse FTZ-F1 were expressed in different amounts in the same tissues and showed a distinct cyclical expression pattern through the molting cycle with βFTZ-F1 being the highest expressed isoform. While RNA interference knockdown of βFTZ-F1 in nauplius larvae and in pre-adult males lead to molting arrest, knockdown of βFTZ-F1 in pre-adult II female lice caused disruption of oocyte maturation at the vitellogenic stage. No apparent phenotype could be observed in αFTZ-F1 knockdown larvae, or in their development to adults, and no genes were found to be differentially expressed in the nauplii larvae following αFTZ-F1 knockdown. βFTZ-F1 knockdown in nauplii larvae caused both down and upregulation of genes associated with proteolysis and chitin binding and affected a large number of genes which are in normal salmon louse development expressed in a cyclical pattern. This is the first description of FTZ-F1 gene function in copepod crustaceans and provides a foundation to expand the understanding of the molecular mechanisms of molting in the salmon louse and other copepods.