The ecosystem approach makes a significant contribution to understanding the current transformations of socio-economic life. New end-to-end technologies have a high potential to minimize the transaction sector in order to focus on meeting the real needs of people and firms and forming economic, political, cultural, and value institutions for sustainable development and justice for all. It seems that the technological breakthroughs of recent years, as well as the reverse pandemic economic dynamics, provide ample opportunities for the spread of innovative ecosystems as a new form of coordination of production activities. The unique characteristics of ecosystems as predominantly self-organizing communities allow us to identify a number of conceptual approaches to the analysis of their development: network, system, digital, stakeholder, and transactional. The objectives of the article do not include their detailed presentation. We show the applicability of approaches for ecosystem analysis. Based on the description of the options and possibilities for the applicability of these approaches, we came to the conclusion that the nature of innovative ecosystems is dual. First, the latter allow us to model (structure, systematize) interorganizational, inter-firm relations in a new way, to identify ecosystem features of communities, industrial and regional complexes. Second, ecosystems need to be recognized as a new form of transactional coordination of economic activity. They are alternatives to institutions such as the firm, the market, and hybrid forms. The increment of scientific knowledge consists in the implementation of the main goal of the study -the systematization of methods for analyzing the development of innovative ecosystems based on the formation of ideas for ecosystem analysis of innovation management.