Soil Organic Carbon Conversion Research Articles

Microbial-mediated conversion of soil organic carbon co-regulates the evolution of antibiotic resistance

The influence of organic carbon on the proliferation of antibiotic resistance genes (ARGs) in the soil has been widely documented. However, it is unclear how soil organic carbon (SOC) interacts with the evolution of antibiotic resistance in bacteria. Here, we examined the variations in ARGs abundance during SOC mineralization and explored the microbiological mechanisms and key metabolic pathways involved in their coevolution. The results showed that the SOC mineralization rate was closely correlated with ARGs abundance (p < 0.05). High organic carbon (OC) mineralization was conducive to the occurrence of multidrug resistance genes. For example, multidrug_transporter and mexB increased 2.26 and 7.83 times from the initial level. The competitor (stress) evolutionary strategy model revealed that higher OC inputs drive environmental microorganisms to evolve from stress tolerant to high resistance and strong adaptation. Meta-genomic and transcriptomic analyses revealed that the conversion process of pyruvate to acetyl-CoA to acetate was the critical metabolic pathway for the co-regulation of antibiotic resistance. Gene deletion validation trials have demonstrated that the key functional genes (ackA and pta) involved in this process can modulate the development of vancomycin and multidrug resistance. This outcome provides a preliminary framework for microbial mechanisms that target the co-regulation of microbial OC conversion and the evolution of antibiotic resistance.

Effects of Biochar on the Microenvironment of Saline-Sodic Soil and Maize Growth

Biochar is a valuable soil amendment substance. However, no systematic study has investigated the effects of biochar on the microenvironment of saline-sodic soils and maize yield in cold areas of Heilongjiang Province. We investigated variations in soil physicochemical properties, soil bacterial and fungal community structure, maize root formation, plant dry matter accumulation, grain filling rate, and maize yield in saline soils treated with biochar (0, 20, 40, and 80 t/ha). Biochar improved saline soil properties and structure, slightly decreasing bulk density and pH and increasing the water-stable aggregate stabilization rate. Furthermore, the relative abundances of Sphingomonas, Lysobacter, Nitrospira, and Gemmatimonas and the fungal genus Guehomyces were increased, promoting the conversion of soil organic carbon and available nitrogen and phosphorus. Moreover, biochar reduced the relative abundance of some fungal pathogenic genera, including Fusarium, Gibberella, Cladosporium, Alternaria, and Epicoccum. However, shifts in soil bacterial and fungal community structure were indirectly driven by biochar-induced changes in soil physicochemical properties, with organic carbon as the most critical. Biochar promoted maize growth, development, and yield (root length, surface area, volume, dry matter accumulation, grain filling rate, and final weight). Biochar application at 40 t/ha had the greatest effect on soil microenvironment improvement, with the highest maize yield.

Molecular Identification of Water-Extractable Organic Carbon from Thermally Heated Soils: C-13 NMR and Accurate Mass Analyses Find Benzene and Pyridine Carboxylic Acids.

To simulate the effects of wildfire on the combustion process in soils and their potential to leach organic compounds into streams and groundwater, mineral soil samples were heated at temperatures of 150-550 °C. Then, the soils were leached with deionized water, filtered, and analyzed for dissolved organic carbon. The water extract was concentrated by both XAD-8 and XAD-4 resins and analyzed by C-13 nuclear magnetic resonance and liquid chromatography time-of-flight mass spectrometry. Approximately 15-20% of the water-extractable organic carbon was identified as benzene dicarboxylic acids, tricarboxylic acids, and tetracarboxylic acid isomers, commonly called BPCAs. Also identified were isomers of pyridine dicarboxylic acids and tricarboxylic acids (PCAs). The conversion of soil organic carbon to BPCAs occurs at 250 °C and reaches a maximum between 350 and 450 °C. At higher temperatures (>450 °C), the BPCA concentrations decrease, suggesting decarboxylation and conversion to carbon dioxide and water. This is the first report of BPCAs and PCAs in water-extractable organic carbon from thermally altered soil and suggest that these compounds are possible candidates for further water-quality studies in watersheds affected by wildfire. Finally, BPCAs and PCAs could contribute to the black carbon and nitrogen in seawater and are worthy of future investigation.

Modelling microbial kinetics and thermodynamic processes for quantifying soil CO2 emission

Soil respiration is a crucial source of carbon dioxide (CO2) in the atmosphere. The underlying processes involved are multifaceted, sequential chemical reactions associated with the conversion of soil organic carbon to CO2. In this paper, we present a mechanistic, biogeochemical model to simulate soil CO2 emissions considering the microbial and sequential chemical processes using the well-established hydrological model, Soil and Water Assessment Tool (SWAT) for the first time. The soil CO2 emissions from multiple sequential soil chemical reactions were compared with the observed data at three sites in Canada. The results show that the modelled CO2 emission rates are in good agreement with the observed data with performance statistics: PBIAS: 0.13%–23%; NSE: 0.27 to 0.62; RSR: 0.60 to 0.84; R2: 0.29 to 0.83. This approach could be used in future regional to global-scale models for simulating the soil CO2 emission and hydrological processes.

Effects of iron(III) reduction on organic carbon decomposition in two paddy soils under flooding conditions.

Iron oxidation and reduction have important effects on soil organic carbon conversion in paddy soil during flooding and dry conditions. This study selected two paddy soil samples, one from the city of Yueyang of Hunan Province and one from the city of Haikou of Hainan Province, that differ significantly in iron content. During a 25-day incubation, the effects of Fe(II) and Fe(III) contents and changes in the levels of several major iron forms on soil dissolved organic carbon (DOC) levels and emission of CH4 and CO2 were observed. The ratio of Fe(II) content to all active Fe increased with an increase in Fe(II) content after soil flooding, and the proportion of all active Fe was significantly higher in the soil samples from Yueyang than in those from Haikou. In only 5days, 92% of Fe(III) was converted to Fe(II) in Yueyang soil samples, and almost all Fe(III) had been transformed into Fe(II) by the end of incubation. Similar behaviors occurred in soil samples collected from Haikou, but Fe(II) represented only 59% of the active Fe by the end of incubation. In total, 2.2gkg-1 of organic carbon in the Yueyang soil sample was converted to CO2 and CH4, and the DOC content increased to 410% of its initial value by the end of incubation. In the Haikou soil, only 0.7gkg-1 of organic carbon was converted to CO2 and CH4, and its DOC content increased to 245% of its initial value by the end of incubation, which was a much smaller increase than observed for the Yueyang sample. Decomposition of organic carbon in the soil was closely related to iron reduction, and reduction of iron in soil significantly affected the conversion rate of organic carbon in soil.

Effect of land use change on soil organic carbon

Abstract The direction of changes and conversion of soil organic carbon (SOC) is in most current ecosystems influenced by human activity. Soil Science and Conservation Research Institute is responsible for monitoring the agricultural soils in a five-year cycle. One part of the soil monitoring involves the determination of the soil organic carbon (SOC) storage. Further, we followed the conversion of arable land on grassland during more than 20 years of monitoring period at some locations where changes in land use occurred. Ten places on basic network and 2 places on key monitoring localities in which arable land have been converted into grassland were identified. About 50 percent of studied soils converted into permanent grassland were Cambisols. The other converted soil types were Luvic Stagnosol, Stagnic Regosol, Mollic Fluvisol, and Stagnic Luvisol. The results showed that after the third monitoring cycle (2002), increase of SOC was observed in all the localities, with the change in land use. Statistical parameter (t-test) confirmed significant differences between the set of average SOC values before and after the land use conversion. The chemical structure of humic acids (HA) isolated from arable soil and permanent grassland indicated increasing of aliphatic carbon content in grassland HA. More aromatic and stabile were HA isolated from arable soils.

Saline soil enzyme activities of four plant communities in Sangong River basin of Xinjiang, China

Soil enzyme activity plays an important role in the conversion of soil organic carbon into inorganic carbon, which is significant for the global carbon cycle. In this study, we investigated the soil enzyme activities of two ligninolytic enzymes (peroxidase and polyphenol oxidase) and five non-ligninolytic enzymes (α-1,4-glucosidase (AG); β-1,4-glucosidase (BG); N-acetyl-β-glucosaminidase (NAG); β-D-cellobiosidase (CBH); and β-xylosidase (BXYL)) in four plant communities of the Sangong River basin in Fukang, North Xinjiang, China. The four typical plant communities were dominated by Haloxylon ammodendron, Reaumuria soongonica, Salsola passerina, and Tamarix rarmosissima, respectively, with saline soils of varied alkalinity. The results showed that the soil peroxidase activity decreased seasonally. The activities of the five non-ligninolytic enzymes decreased with increasing soil depths, while those of the two ligninolytic enzymes did not show such a trend. In the four plant communities, BG had the highest activity among the five non-ligninolytic enzymes, and the activities of the two ligninolytic enzymes were higher than those of the four non-ligninolytic ones (AG, NAG, CBH, and BXYL). The community of H. ammodendron displayed the highest activity with respect to the two ligninolytic enzymes in most cases, but no significant differences were found among the four plant communities. The geometric mean of soil enzyme activities of the four plant communities was validated through an independently performed principal component analysis (PCA), which indicated that different plant communities had different soil enzyme activities. The correlation analysis showed that soil polyphenol oxidase activity was significantly positively correlated with the activities of the five non-ligninolytic enzymes. The soil pH value was positively correlated with the activities of all soil enzymes except peroxidase. Soil microbial carbon content also showed a significant positive correlation (P<0.01) with the activities of all soil enzymes except polyphenol oxidase. The results suggested that the H. ammodendron community has the highest ability to utilize soil organic carbon, and glucoside could be the most extensively utilized non-ligninolytic carbon source in the saline soil of arid areas in Xinjiang.

Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil

AbstractThe soils of the McMurdo Dry Valleys are exposed to extremely dry and cold conditions. Nevertheless, they contain active biological communities that contribute to the biogeochemical processes. We have used ester-linked fatty acid (ELFA) analysis to investigate the effects of additions of carbon and nitrogen in glucose and ammonium chloride, respectively, on the soil microbial community in a field experiment lasting three years in the Garwood Valley. In the control treatment, the total ELFA concentration was small by comparison with temperate soils, but very large when expressed relative to the soil organic carbon concentration, indicating efficient conversion of soil organic carbon into microbial biomass and rapid turnover of soil organic carbon. The ELFA concentrations increased significantly in response to carbon additions, indicating that carbon supply was the main constraint to microbial activity. The large ELFA concentrations relative to soil organic carbon and the increases in ELFA response to organic carbon addition are both interpreted as evidence for the soil microbial community containing organisms with efficient scavenging mechanisms for carbon. The diversity of the ELFA profiles declined in response to organic carbon addition, suggesting the responses were driven by a portion of the community increasing in dominance whilst others declined.