Conventional Breeding Approaches Research Articles

Brassica Vegetables - An Undervalued Nutritional Goldmine

Abstract The genus Brassica includes six species and over 15 types of vegetables that are widely cultivated and consumed globally. This group of vegetables is rich in bioactive compounds, including glucosinolates, vitamins (such as vitamin C, folate, tocopherol, and phylloquinone), carotenoids, phenols, and minerals, which are crucial for enriching diets and maintaining human health. However, the full extent of these phytonutrients and their significant health benefits remain to be fully elucidated. This review highlights the nutrient compositions and health advantages of Brassica vegetables and discusses the impacts of various processing methods on their nutritional value. Additionally, we discuss potential strategies for enhancing the nutrition of Brassica crops through agronomic biofortification, conventional breeding, and biotechnological or metabolic engineering approaches. This review lays the foundation for the nutritional improvement of Brassica crops.

Lentil adaptation to drought stress: response, tolerance, and breeding approaches.

Lentil (Lens culinaris Medik.) is a cool season legume crop that plays vital roles in food and nutritional security, mostly in the least developed countries. Lentil is often cultivated in dry and semi-dry regions, where the primary abiotic factor is drought, which negatively impacts lentil growth and development, resulting in a reduction of yield. To withstand drought-induced multiple negative effects, lentil plants evolved a variety of adaptation strategies that can be classified within three broad categories of drought tolerance mechanisms (i.e., escape, avoidance, and tolerance). Lentil adapts to drought by the modulation of various traits in the root system, leaf architecture, canopy structure, branching, anatomical features, and flowering process. Furthermore, the activation of certain defensive biochemical pathways as well as the regulation of gene functions contributes to lentil drought tolerance. Plant breeders typically employ conventional and mutational breeding approaches to develop lentil varieties that can withstand drought effects; however, little progress has been made in developing drought-tolerant lentil varieties using genomics-assisted technologies. This review highlights the current understanding of morpho-physiological, biochemical, and molecular mechanisms of lentil adaptation to drought stress. We also discuss the potential application of omics-assisted breeding approaches to develop lentil varieties with superior drought tolerance traits.

Comparison of the Agronomic Performance between a Pigeonpea Hybrid and Five Breeding Lines Developed through Conventional Breeding

Pigeonpea [Cajanus cajan (L.) Mill.] may have cross- or self-pollination that allows the use of hybrids or improved genotypes by conventional breeding approaches in pigeonpea production. The objectives of this research were to: 1) compare the agronomic performance of a hybrid vs. breeding lines (BLs) developed by pedigree and bulk methods, and 2) determine if there were average and useful heterosis and heterobeltiosis for quantitative traits. The hybrid 13KLAF1 and UPE-1, UPE-2, UPE-3, UPE-4, UPE-5 BLs, their parents (13KPP-264-05 and ‘Lázaro’), and one early maturity check ‘ICPL 86012’ were evaluated in field trials in Isabela and Lajas, PR. Data of plant height, days to flowering and harvest, seed yield, and weight of 100 dry-seeds were noted for all genotypes. There were no significant differences between 13KLAF1 and UPE BLs for plant height in both locations. ‘Lázaro’ was late maturity in Isabela (157 days) and Lajas (124 days), as expected. The weight of 100 seeds for all genotypes did not reach values more than 18.5 and 16.3 g such as those observed for 13KPP-264-05 in Isabela and Lajas, respectively. The higher seed yields were observed for 13KLAF1 (3112 kg·ha−1), UPE-4 (2970 kg·ha−1), and ‘ICPL 86012’ (2739 kg·ha−1) in Isabela, whereas 13KLAF1 (1599 kg·ha−1) and ‘ICPL 86012’ (1450 kg·ha−1) produced the higher yields in Lajas. The 13KLAF1 showed an average heterosis and heterobeltiosis of 87% and 60%, and 78% and 30% for seed yield in Isabela and Lajas, respectively. The useful heterosis was >125% in both locations.

Comparative Seed Proteome Profile Reveals No Alternation of Major Allergens in High-Yielding Mung Bean Cultivars.

Mung bean contains up to 32.6% protein and is one of the great sources of plant-based protein. Because many allergens also function as defense-related proteins, it is important to determine their abundance levels in the high-yielding, disease-resistant cultivars. In this study, for the first time, we compared the seed proteome of high-yielding mung bean cultivars developed by a conventional breeding approach. Using a label-free quantitative proteomic platform, we successfully identified and quantified a total of 1373 proteins. Comparative analysis between the high-yielding disease-resistant cultivar (MC5) and the other three cultivars showed that a total of 69 common proteins were significantly altered in their abundances across all cultivars. Bioinformatic analysis of these altered proteins demonstrated that PDF1 (a defensin-like protein) exhibited high sequence similarity and epitope matching with the established peanut allergens, indicating a potential mung bean allergen that showed a cultivar-specific response. Conversely, known mung bean allergen proteins such as PR-2/PR-10 (Vig r 1), Vig r 2, Vig r 4, LTP1, β-conglycinin, and glycinin G4 showed no alternation in the MC5 compared to other cultivars. Taken together, our findings suggest that the known allergen profiles may not be impacted by the conventional plant breeding method to develop improved mung bean cultivars.

Grain and shoot iron (Fe) content and root phytosiderophore release are the major determinants of Fe-deficiency tolerance index (FeDTI) and the reliable screening markers to breed Fe-efficient rice (Oryza sativa L.)

There is a need to exploit the genetic variability in rice to improve the Fe deficiency tolerance, particularly under aerobic conditions, and to improve the Fe uptake and accumulation in the grain to facilitate biofortification. The present research was conducted to ascertain the regulators and determinants of Fe-deficiency tolerance in rice. Fifty-seven diverse genotypes were investigated under Fe-deficient (1 µM, FDS, -Fe) and Fe-sufficient (100 µM, FSS, +Fe) nutrient solution cultures for growth and physiological attributes, Fe uptake and accumulation and root release of phytosiderophores (PS), etc., and Fe-deficiency tolerance index (FeDTI). A strong positive correlation was observed between root traits and the PS release. Further, a higher release of PS was evidenced as a major determinant of shoot Fe and grain Fe in rice particularly under Fe deficiency. Based on FeDTI, a total of ten rice genotypes were identified, and their Fe deficiency response was further validated on Fe deficient (∼2.1 ppm Fe, FeDS) and Fe-sufficient soils (∼10 ppm Fe, FeSS) in pot culture. Maintenance of high active Fe content and consequently a higher leaf chlorophyll content throughout the plant growth were extremely important determinants of grain yield and grain Fe fortification in rice under Fe deficiency than under the Fe sufficient condition. Based on the FeDTI, this study further identifies the Fe-deficiency tolerant rice genotypes which can be exploited through conventional and molecular breeding approaches to improve the Fe uptake efficiency and grain Fe content of the high-yielding rice genotypes.

CRISPR/Cas9-based genome editing and functional analysis of SlHyPRP1 and SlDEA1 genes of Solanum lycopersicum L. in imparting genetic tolerance to multiple stress factors.

CRISPR/Cas is a breakthrough genome editing system because of its precision, target specificity, and efficiency. As a speed breeding system, it is more robust than the conventional breeding and biotechnological approaches for qualitative and quantitative trait improvement. Tomato (Solanum lycopersicum L.) is an economically important crop, but its yield and productivity have been severely impacted due to different abiotic and biotic stresses. The recently identified SlHyPRP1 and SlDEA1 are two potential negative regulatory genes in response to different abiotic (drought and salinity) and biotic stress (bacterial leaf spot and bacterial wilt) conditions in S. lycopersicum L. The present study aimed to evaluate the drought, salinity, bacterial leaf spot, and bacterial wilt tolerance response in S. lycopersicum L. crop through CRISPR/Cas9 genome editing of SlHyPRP1 and SlDEA1 and their functional analysis. The transient single- and dual-gene SlHyPRP1 and SlDEA1 CRISPR-edited plants were phenotypically better responsive to multiple stress factors taken under the study. The CRISPR-edited SlHyPRP1 and SlDEA1 plants showed a higher level of chlorophyll and proline content compared to wild-type (WT) plants under abiotic stress conditions. Reactive oxygen species accumulation and the cell death count per total area of leaves and roots under biotic stress were less in CRISPR-edited SlHyPRP1 and SlDEA1 plants compared to WT plants. The study reveals that the combined loss-of-function of SlHyPRP1 along with SlDEA1 is essential for imparting significant multi-stress tolerance (drought, salinity, bacterial leaf spot, and bacterial wilt) in S. lycopersicum L. The main feature of the study is the detailed genetic characterization of SlDEA1, a poorly studied 8CM family gene in multi-stress tolerance, through the CRISPR/Cas9 gene editing system. The study revealed the key negative regulatory role of SlDEA1 that function together as an anchor gene with SlHyPRP1 in imparting multi-stress tolerance in S. lycopersicum L. It was interesting that the present study also showed that transient CRISPR/Cas9 editing events of SlHyPRP1 and SlDEA1 genes were successfully replicated in stably generated parent-genome-edited line (GEd0) and genome-edited first-generation lines (GEd1) of S. lycopersicum L. With these upshots, the study's key findings demonstrate outstanding value in developing sustainable multi-stress tolerance in S. lycopersicum L. and other crops to cope with climate change.

Development of early maturing salt-tolerant rice variety KKL(R) 3 using a combination of conventional and molecular breeding approaches.

Introduction: Soil salinity poses a severe threat to rice production, resulting in stunted growth, leaf damage, and substantial yield losses. This study focuses on developing an early maturing seedling stage salinity tolerant rice variety by integrating conventional breeding methods with marker assisted breeding (MAB) approaches. Methods: Seedling-stage salinity tolerance Quantitative Trait Locus (QTL) "Saltol" from the salt-tolerant parent FL478 was introduced into the high-yielding but salt-sensitive rice variety ADT 45. This was achieved through a combination of conventional breeding and MAB. The breeding process involved rigorous selection, screening, and physiological parameter assessments. Results: KKL(R) 3 (KR 15066) identified as the top performing Recombinant Inbred Line (RIL), consistently demonstrating maximum mean grain yields under both salinity (3435.6kg/ha) and normal (6421.8kg/ha) conditions. In comparison to the early maturing, salt-tolerant national check variety CSR 10, KKL(R) 3 exhibited a substantial yield increase over 50%. Discussion: The notable improvement observed in KKL(R) 3 positions it as a promising variety for release, offering a reliable solution to maximize yields, ensure food security, and promote agricultural sustainability in both saline and non-saline environments. The study highlights the effectiveness of MAB in developing salt-tolerant rice varieties and emphasizes the significance of the Saltol QTL in enhancing seedling stage salinity tolerance. The potential release of KKL(R) 3 has the capacity to revolutionize rice production in salt affected regions, providing farmers with a reliable solution to maximize yields and contribute to food security while ensuring agricultural sustainability.

Genotyping by sequencing for the construction of oil palm (Elaeis guineensis Jacq.) genetic linkage map and mapping of yield related quantitative trait loci.

Oil palm (Elaeis guineensis Jacq.) is one of the major oil-producing crops. Improving the quality and increasing the production yield of oil palm have been the primary focuses of both conventional and modern breeding approaches. However, the conventional breeding approach for oil palm is very challenging due to its longevity, which results in a long breeding cycle. Thus, the establishment of marker assisted selection (MAS) for oil palm breeding programs would speed up the breeding pipeline by generating new oil palm varieties that possess high commercial traits. With the decreasing cost of sequencing, Genotyping-by-sequencing (GBS) is currently feasible to many researchers and it provides a platform to accelerate the discovery of single nucleotide polymorphism (SNP) as well as insertion and deletion (InDel) markers for the construction of a genetic linkage map. A genetic linkage map facilitates the identification of significant DNA regions associated with the trait of interest via quantitative trait loci (QTL) analysis. A mapping population of 112 F1 individuals from a cross of Deli dura and Serdang pisifera was used in this study. GBS libraries were constructed using the double digestion method with HindIII and TaqI enzymes. Reduced representation libraries (RRL) of 112 F1 progeny and their parents were sequenced and the reads were mapped against the E. guineensis reference genome. To construct the oil palm genetic linkage map, informative SNP and InDel markers were used to discover significant DNA regions associated with the traits of interest. The nine traits of interest in this study were fresh fruit bunch (FFB) yield, oil yield (OY), oil to bunch ratio (O/B), oil to dry mesocarp ratio (O/DM) ratio, oil to wet mesocarp ratio (O/WM), mesocarp to fruit ratio (M/F), kernel to fruit ratio (K/F), shell to fruit ratio (S/F), and fruit to bunch ratio (F/B). A total of 2.5 million SNP and 153,547 InDel markers were identified. However, only a subset of 5,278 markers comprising of 4,838 SNPs and 440 InDels were informative for the construction of a genetic linkage map. Sixteen linkage groups were produced, spanning 2,737.6 cM for the maternal map and 4,571.6 cM for the paternal map, with average marker densities of one marker per 2.9 cM and one per 2.0 cM respectively, were produced. A QTL analysis was performed on nine traits; however, only QTL regions linked to M/F, K/F and S/F were declared to be significant. Of those QTLs were detected: two for M/F, four for K/F and one for S/F. These QTLs explained 18.1-25.6% of the phenotypic variance and were located near putative genes, such as casein kinase II and the zinc finger CCCH domain, which are involved in seed germination and growth. The identified QTL regions for M/F, K/F and S/F from this study could be applied in an oil palm breeding program and used to screen palms with desired traits via marker assisted selection (MAS).

Exploring genetic variability under extended photoperiod in lentil (Lens Culinaris Medik): vegetative and phenological differentiation according to genetic material’s origins

Lentil is an important pulse that contributes to global food security and the sustainability of farming systems. Hence, it is important to increase the production of this crop, especially in the context of climate changes through plant breeding aiming at the development of high-yielding and climate-smart cultivars. However, conventional plant breeding approaches are time and resources consuming. Thus, speed breeding techniques enabling rapid generation turnover could help to accelerate the development of new varieties. The application of extended photoperiod prolonging the duration of the plant’s exposure to light and shortening the duration of the dark phase is among the simplest speed breeding techniques. In this study, genetic variability response under extended photoperiod (22 h of light/2 h of dark at 25 °C) of a lentil collection of 80 landraces from diverse latitudinal origins low (0°–20°), medium (21°–40°) and high (41°–60°), was investigated. Significant genetic variations were observed between accessions, for time to flowering [40 → 120 days], time of pods set [45 → 130 days], time to maturity [64 → 150 days], harvest index [0 → 0.24], green canopy cover [0.39 → 5.62], seedling vigor [2 → 5], vegetative stage length [40 → 120 days], reproduction stage length [3 → 13 days], and seed filing stage length [6 → 25 days]. Overall, the accessions from Low latitudinal origin demonstrated a favorable response to the extended photoperiod application with almost all accessions flowered, while 18% and 57% of accessions originating from medium and high latitudinal areas, respectively, did not successfully reach the flowering stage. These results enhanced our understanding lentil responses to photoperiodism under controlled conditions and are expected to play important roles in speed breeding based on the application of the described protocol for lentil breeding programs in terms of choosing appropriate initial treatments such as vernalization depending on the origin of accession.

Cucumber: Breeding and Genomics

Cucumber (Cucumis sativus L.) is one of the most important vegetable crops grown worldwide for immature fruits. Several improved varieties with a number of economically important traits were developed through conventional breeding. The availability of draft genome sequences has facilitated the wide application of genomics tools in cucumber improvement in last two decades. C. sativus var. hardwickii widely distributed in the northern foothills of the Himalayas is the progenitor of the present-day cultivated cucumbers. A large number of commercially cultivated varieties and hybrids were developed through conventional breeding approaches. In hybrid breeding, gynoecious sex expression has been used widely for the development of more productive hybrids economically. Genetic inheritance and molecular characterization were done for a large number of traits including agro-morphological, quality, biotic and abiotic stress tolerance. Besides, candidate genes were also identified for the number of traits and later on validated through transformation and knock-out. Sex expression has been studied widely in this crop and cucumber serves as the model crop to study sex expression. A number of genes for sex expression and other economically important traits were characterized and cloned. Development of cucumber inbreds with multiple disease resistance, better quality and tolerance to abiotic stress tolerance are the major focus in future cucumber improvement programme.

The Exploration and Utilization of Coffee (Coffea arabica L.) Genetic Resource in Its Center of Origin

Coffee, which is the most popular soft drink in the world, belongs to the genus Coffea in the Rubiaceae family. About 124 species are known in this genus, whereas Coffea arabica L. and Coffea canephora are the two most widely cultivated species worldwide. Coffea arabica is the only tetraploid species in the genus coffea and is self-fertile, while other species are diploid and generally self-incompatible. Ethiopia is the center of origin and diversity for arabica coffee, which is the only species cultivated in the country. The availability of wide genetic variability among the indigenous coffee and the diverse agro-ecologies in the country provided immense possibilities to improve the crop for desirable agronomic and breeding interest traits. Cognizant of this and the occurrence of coffee berry disease (CBD) in Ethiopia for the first time, a coffee breeding program was initiated in the 1970’s aiming at exploiting the available genetic diversity and developing productive varieties combining disease resistance, best quality, and other desirable characteristics. Coffee genetic resource collection, characterization, evaluation, conservation and genetic studies are among the major breeding activities undertaken so far by designing and implementing different breeding strategies following the conventional breeding approach. So far, outstanding achievements have been recorded in collecting 7130 germplasm accessions, generating basic information on the genetics aspects, and developing 44 improved varieties of which seven are F1 hybrids and identifying 149 elite promising genotypes for further evaluation to develop and release a new varieties. Extensive collection of coffee genetic resources from unaddressed areas, and application of molecular breeding techniques such as marker-assisted selection and breeding for stress tolerance, among others, would be the main focus areas of future coffee breeding programs.

Apple CRISPR-Cas9-A Recipe for Successful Targeting of AGAMOUS-like Genes in Domestic Apple.

Fruit trees and other fruiting hardwood perennials are economically valuable, and there is interest in developing improved varieties. Both conventional breeding and biotechnology approaches are being utilized towards the goal of developing advanced cultivars. Increased knowledge of the effectiveness and efficiency of biotechnology approaches can help guide use of the CRISPR gene-editing technology. Here, we examined CRISPR-Cas9-directed genome editing in the valuable commodity fruit tree Malus x domestica (domestic apple). We transformed two cultivars with dual CRISPR-Cas9 constructs designed to target two AGAMOUS-like genes simultaneously. The main goal was to determine the effectiveness of this approach for achieving target gene changes. We obtained 6 Cas9 control and 38 independent CRISPR-Cas9 events. Of the 38 CRISPR-Cas9 events, 34 (89%) had gene edits and 14 (37%) showed changes to all alleles of both target genes. The most common change was large deletions, which were present in 59% of all changed alleles, followed by small deletions (21%), small insertions (12%), and a combination of small insertions and deletions (8%). Overall, a high rate of successful gene alterations was found. Many of these changes are predicted to cause frameshifts and alterations to the predicted peptides. Future work will include monitoring the floral development and floral form.

Comparative Study of Genomic DNA Extraction Methods for Common bean (Phaseolus vulgaris L.)

Common bean (Phaseolus vulgaris L.) is one of the significant grains used in the human diet, accounting for half of all grain legumes consumed globally. To enhance production, conventional breeding and molecular approaches have been used so far. An efficient and rapid genomic DNA extraction method is required for these molecular approaches. The aim of this study was to compare and optimize an efficient and rapid DNA extraction protocol for common bean. Modified cetyl trimethylammonium bromide (CTAB) and potassium chloride (KCL) extraction methods were used. The mean DNA yield per nanoliter was 209 µg from modified CTAB and 150.3 µg from the KCL method. The concentration of gDNA was significantly (P< 0.05) higher for the KCL method, which was 5.01 µg/µl and 2.09 µg/µl for the CTAB method. The obtained DNA was also pure, with an absorbance ratio at 260 nm to an absorbance of 280 nm (A260/280) of 1.75-2.23 for the KCL method and 1.86-2.09 for the modified CTAB method. Gel electrophoresis separation was used to evaluate the quality of the total DNA extracted by the present protocols. The results showed that intense bands close to the gel wells were obtained from both extraction methods. DNA isolated with the two methods was successfully used for PCR-based downstream analysis, which includes random amplified polymorphic DNA (RAPD) and simple sequence repeat (SSR) markers. In this study, it took approximately 150 minutes for KCL and 240 minutes for the CTAB for whole process. In contrast to the CTAB method, the KCL method uses inexpensive and less hazardous reagents and requires only ordinary laboratory equipment. Therefore, it is more convenient and economical than the traditional technique.

A review on conventional and modern breeding approaches for developing climate resilient crop varieties

The escalating threat of climate change is a major challenge to global food security. One of the ways to mitigate its impact is by developing crops that can withstand environmental stresses such as drought, heat, and salinity. Plant breeders have been employing conventional and modern approaches to achieve climate-resilient crops. Climate-resilient crops refer to both crop and crop varieties that exhibit improved tolerance towards biotic and abiotic stresses. These crops possess the capacity to maintain or even increase their yields when exposed to various stress conditions, such as drought, flood, heat, chilling, freezing and salinity. Conventional breeding entails selecting and crossing plants with desirable traits, while modern breeding deploys molecular techniques to identify and transfer specific genes associated with stress tolerance. However, the effectiveness of both methods is contingent on the crop species and the targeted stress. Advancements in gene editing, such as CRISPER-cas9 and genomics-assisted breeding, offer new opportunities to hasten the development of climate-resilient crops. These new technologies include Marker Assisted Selection, Genome-Wide Association Studies, Mutation breeding, Transcriptomics, Genomics, and more. The review concludes that these cutting-edge techniques have the potential to enhance the speed and precision of developing crops that can endure the challenges posed by climate change.

Conventional and molecular breeding strategies for improvement of drought tolerance cultivars in rice: Recent approaches and outlooks

Rice is a vital staple food, especially in Asia, but it is highly susceptible to drought, leading to significant yield losses. To ensure food sustainability, drought-tolerant rice varieties are essential. Conventional breeding methods improve drought tolerance by focusing on biometric traits like root depth, avoidance, escape, and tolerance. This involves screening and crossing drought-tolerant varieties with high-yielding ones, followed by selection and evaluation. Techniques such as pedigree selection, recurrent selection, and backcrossing introduce desirable genes to enhance drought tolerance. Induced mutation through radiation exposure is also used. The molecular basis of drought tolerance involves identifying and manipulating genes responsible for rice's response to water stress. Techniques like QTL analysis, transcriptomics, genomics, and proteomics identify genes and QTLs associated with drought tolerance. Important genes involved in drought response include DREB, LEA, and ROS scavenging genes. Identifying QTLs enables the development of molecular markers for efficient screening of drought-tolerant rice genotypes. In conclusion, conventional breeding and molecular approaches are employed to develop drought-tolerant rice varieties. Conventional breeding improves biometric traits, while molecular techniques identify and manipulate specific genes associated with drought tolerance. This combination holds promise for high-yielding and drought-tolerant rice cultivars, contributing to global food security. However, further research is needed to understand the complex genetic mechanisms underlying drought tolerance in rice and enhance breeding precision and efficiency.

Drought and salinity stresses induced physio-biochemical changes in sugarcane: an overview of tolerance mechanism and mitigating approaches.

Sugarcane productivity is being hampered globally under changing environmental scenarios like drought and salinity. The highly complex nature of the plant responses against these stresses is determined by a variety of factors such as genotype, developmental phase of the plant, progression rate and stress, intensity, and duration. These factors influence plant responses and can determine whether mitigation approaches associated with acclimation are implemented. In this review, we attempt to summarize the effects of drought and salinity on sugarcane growth, specifically on the plant's responses at various levels, viz., physiological, biochemical, and metabolic responses, to these stresses. Furthermore, mitigation strategies for dealing with these stresses have been discussed. Despite sugarcane's complex genomes, conventional breeding approaches can be utilized in conjunction with molecular breeding and omics technologies to develop drought- and salinity-tolerant cultivars. The significant role of plant growth-promoting bacteria in sustaining sugarcane productivity under drought and salinity cannot be overlooked.

Insights into the molecular mechanisms underlying responses of apple trees to abiotic stresses.

Apple (Malus[Formula: see text]domestica) is a popular temperate fruit crop worldwide. However, its growth, productivity, and quality are often adversely affected by abiotic stresses such as drought, extreme temperature, and high salinity. Due to the long juvenile phase and highly heterozygous genome, the conventional breeding approaches for stress-tolerant cultivars are time-consuming and resource-intensive. These issues may be resolved by feasible molecular breeding techniques for apples, such as gene editing and marker-assisted selection. Therefore, it is necessary to acquire a more comprehensive comprehension of the molecular mechanisms underpinning apples' response to abiotic stress. In this review, we summarize the latest research progress in the molecular response of apples to abiotic stressors, including the gene expression regulation, protein modifications, and epigenetic modifications. We also provide updates on new approaches for improving apple abiotic stress tolerance, while discussing current challenges and future perspectives for apple molecular breeding.

Yellow Mosaic Virus (YMV) in Green Gram: Impacts, Management, and Future Perspectives

Yellow mosaic virus (YMV) is a destructive viral pathogen that affects green gram (Vigna radiata) crops, leading to significant yield losses and economic repercussions. This review paper provides a comprehensive analysis of the impacts of YMV on green gram cultivation, explores the current management strategies employed to combat the disease, and discusses future perspectives for effective YMV control and prevention. YMV is primarily transmitted through whiteflies and infects green gram plants at various stages of growth, causing severe symptoms such as leaf yellowing, stunted growth, and mosaic patterns. These symptoms ultimately lead to reduced crop yield and quality. The virus poses a major threat to green gram production globally, demanding urgent attention and effective management practices. Various management approaches have been employed to mitigate the impact of YMV. Cultural practices, including proper field sanitation, weed control, and crop rotation, play a vital role in disease management. Insecticide application, use of yellow sticky traps, and whitefly population monitoring are important components of integrated pest management strategies aimed at reducing virus transmission. Additionally, the development and deployment of resistant cultivars through conventional breeding and biotechnological approaches have shown promise in minimizing YMV infection and its associated losses. Despite these efforts, YMV continues to pose significant challenges to green gram production, necessitating further research and innovative approaches. Future perspectives for YMV management involve the integration of advanced technologies such as molecular diagnostics, genome editing, and RNA interference to enhance disease resistance in green gram varieties. Additionally, promoting awareness among farmers about YMV symptoms, preventive measures, and adoption of integrated disease management strategies will contribute to sustainable green gram production. In conclusion, YMV represents a major threat to green gram cultivation, affecting crop productivity and economic sustainability. This review emphasizes the need for concerted efforts to develop comprehensive YMV management strategies. By combining conventional and modern techniques, effective disease control measures can be implemented to mitigate the impact of YMV and secure the future of green gram production.

Deciphering the myth of cold tolerance in soybean: An overview of molecular breeding applications

The soybean is a source of several dietary components, including milk, protein, and oil. Cold stress has significantly curtailed soybean growth and yield in large areas and caused a high risk to global food security. The main objective of soybean breeders is to improve soybean resistance to cold stress. Conventional breeding approaches have made significant progress in developing cold tolerance in soybean; however, the high cost and complex genetic mechanism of cold tolerance hindered the large scale of these techniques. Molecular tools like quantitative trait loci (QTL), genome-wide association studies (GWAS), transcription factors (TFs), genetic engineering, and transcriptome have been used to identify cold tolerant genes/QTL and to develop soybean cultivars tolerant to cold stress. Clustered, regularly interspaced short palindromic repeats (CRISPR/Cas9) is used to increase the abiotic stress tolerance in soybean; however, its use to edit the cold tolerance genes in soybean is limited. Mapping of QTL has accelerated the master-assisted selection (MAS) in soybean. This review presents a detailed overview of molecular techniques and their use in developing cold-tolerant soybean cultivars. Using CRISPR/Cas9 would increase the speed of molecular breeding for cold tolerance in soybean. This information will assist soybean researchers in uncovering the basis of cold stress tolerance in soybean and adopting the most suitable way to breed the cold tolerant cultivars which can thrive under the extreme pressure of cold stress.

Genome engineering of disease susceptibility genes for enhancing resistance in plants.

Introgression of disease resistance genes (R-genes) to fight against an array of phytopathogens takes several years using conventional breeding approaches. Pathogens develop mechanism(s) to escape plants immune system by evolving new strains/races, thus making them susceptible to disease. Conversely, disruption of host susceptibility factors (or S-genes) provides opportunities for resistance breeding in crops. S-genes are often exploited by phytopathogens to promote their growth and infection. Therefore, identification and targeting of disease susceptibility genes (S-genes) are gaining more attention for the acquisition of resistance in plants. Genome engineering of S-genes results in targeted, transgene-free gene modification through CRISPR-Cas-mediated technology and has been reported in several agriculturally important crops. In this review, we discuss the defense mechanism in plants against phytopathogens, tug of war between R-genes and S-genes, in silico techniques for identification of host-target (S-) genes and pathogen effector molecule(s), CRISPR-Cas-mediated S-gene engineering, its applications, challenges, and future prospects.