Controlled Environment Experiments Research Articles

Genetic mapping of loci affecting seedling and adult-plant resistance to powdery mildew derived from two CIMMYT wheat lines

Main conclusionPM3 and PM8 alleles carried by two CIMMYT wheat lines confer powdery mildew resistance in seedlings and/or adult plants. A stage-specific epistatic interaction was observed between PM3 and PM8.Powdery mildew is an important foliar disease of wheat. Major genes for resistance, which have been widely used in wheat breeding programs, are typically effective against only limited numbers of virulence genes of the pathogen. The main aim of this study was to map resistance loci in wheat lines 7HRWSN58 and ZWW09-149 from the International Maize and Wheat Improvement Center (CIMMYT). Doubled haploid populations (Magenta/7HRWSN58 and Emu Rock/ZWW09-149) were developed and grown in controlled environment experiments and inoculated with a composite of Blumeria graminis f.sp. tritici isolates that had been collected at various locations in Western Australia. Plants were assessed for powdery mildew symptoms (percentage leaf area diseased) on seedlings and adult plants. Populations were subjected to genotyping-by-sequencing and assayed for known SNPs in the resistance gene PM3. Linkage maps were constructed, and markers were anchored to the wheat reference genome sequence. In both populations, there were asymptomatic lines that exhibited no symptoms. Among symptomatic lines, disease severity varied widely. In the Magenta/7HRWSN58 population, most of the observed variation was attributed to the PM3 region of chromosome 1A, with the allele from 7HRWSN58 conferring resistance in seedlings and adult plants. In the Emu Rock/ZWW09-149 population, two interacting quantitative trait loci were mapped: one at PM3 and the other on chromosome 1B. The Emu Rock/ZWW09-149 population was confirmed to segregate for a 1BL·1RS translocation that carries the PM8 powdery mildew resistance gene from rye. Consistent with previous reports that PM8-derived resistance can be suppressed by PM3 alleles, the observed interaction between the quantitative trait loci on chromosomes 1A and 1B indicated that the PM3 allele carried by ZWW09-149 suppresses PM8-derived resistance from ZWW09-149, but only at the seedling stage. In adult plants, the PM8 region conferred resistance regardless of the PM3 genotype. The resistance sources and molecular markers that were investigated here could be useful in wheat breeding.

Introgression of early shoot vigour in wheat modifies root systems, increases competitiveness and provides options for integrated weed management

Abstract Background and aims Weeds are a major biotic stressor impacting crop production. Improving the competitiveness of wheat (Triticum aestivum L.) could provide a useful tool in integrated weed management. While wheat typically exhibits conservative early growth, early vigour has been increased through long-term recurrent selection for greater early biomass and leaf area. However, the influence of integrating such vigour into breeding lines for improving competitive ability remains to be explored. Methods In replicated controlled environment experiments, the effect of breeding early shoot vigour on root development and below-ground competitiveness was carefully examined. Physical and chemical characteristics of wheat vigour lines were assessed and compared with commercial cultivars in hydroponics and field soil experiments. Measurements included early root growth, rhizosheath size and growth responses in the presence of annual ryegrass, a major weed in wheat production. Results The vigorous lines exhibited larger leaf widths, increased cell file number, increased total root length and larger rhizosheaths compared with commercial parents. Numerous secondary metabolites with known allelopathic effects on weeds were detected in the roots and the rhizosphere, and significant allelochemical level differences observed between distilled water and soil water extract-treated plants. Although the vigour lines were significantly more competitive than the commercial cultivars against ryegrass, they produced similar levels of phytotoxic secondary metabolites. Conclusion Competition below-ground was strongly suppressive of ryegrass for the more vigorous genotypes suggesting that breeding with shoot vigour had pleiotropic effects on key root traits for below-ground wheat competitiveness.

Effects of the soil moisture content and leaf memory effect on pesticide droplet absorption

Most pesticide spraying studies focus on increasing droplet deposition on target surfaces, with little consideration of post-deposition pesticide droplet absorption mechanisms. The pesticide droplet absorption efficiency of leaves is related to environmental factors and plant growth status during pesticide application. In field environments, irrigation-based soil moisture content regulation is a key plant growth status adjustment method. A theoretical pesticide droplet leaf absorption model was established to study the effects of soil moisture content on droplet absorption. Controlled environment experiments were carried out to investigate the absorption of pesticide droplets, and a chi-square test was used to verify the model reliability. The results showed that pesticide droplet leaf absorption flux first increased and then decreased with increasing soil water content. The diurnal leaf water potential and stomatal conductance variationsindicated a memory effect, resulting in diurnal variationsin the pesticide droplet leaf absorption flux. Under the same soil water conditions, the absorption flux first increased and then decreased from 8 am to 6 pm (Beijing Time). Effective application of pesticides can be significantly enhanced by controlling soil moisture content and selecting the appropriate spraying time. The best spraying combination improved the application effectiveness nearly threefold overthat of the worst combination. The results are crucial for rational pesticide use, crop spraying optimization, and water savings.

Irrigation of Sand-based Creeping Bentgrass Putting Greens with Nanobubble-oxygenated Water

Cultural and environmental factors can place creeping bentgrass (Agrostis stolonifera) under extreme stress during the summer months. This stress, coupled with the growth adaptation of creeping bentgrass, can result in shallow, poorly rooted stands of turf. To enhance root zone oxygen and rooting of creeping bentgrass, golf courses use methods such as core and solid-tine aerification, and sand topdressing. An additional method of delivering oxygen to the soil could be irrigation with nanobubble-oxygenated water. The properties of nanobubbles (NBs) allow for high gas dissolution rates in water. Irrigating with NB-oxygenated water sources may promote increased rooting of creeping bentgrass putting greens during high-temperature periods and lead to a more resilient playing surface. The objectives of this study include comparing the effects of irrigation with NB-oxygenated water sources with untreated water sources on creeping bentgrass putting green root zone and plant health characteristics using field and controlled environment experiments. Treatments included NB-oxygenated potable water and irrigation pond water, and untreated potable and irrigation pond water. In the field, NB-oxygenated water did not enhance plant health characteristics of creeping bentgrass. In 1 year, NB-oxygenated water increased the daily mean partial pressure of soil oxygen from 17.48 kPa to 18.21 kPa but soil oxygen was unaffected in the other 2 years of the trial. Subsurface irrigation with NB-oxygenated water did not affect measured plant health characteristics in the greenhouse. NB-oxygenation of irrigation water remains an excellent means of efficiently oxygenating large volumes of water. However, plant health benefits from NB-oxygenated irrigation water were not observed in this research.

Multiple physiological mechanisms involved in reproduction could be targeted for breeding heat tolerance in lima bean

AbstractWith global warming, the impact of high‐temperature stress on crop production is one of the major issues facing agriculture. Combining a series of field and controlled environment experiments, the current study aimed at understanding causes of yield loss due to heat stress in lima bean (Phaseolus lunatus L.) in order to guide breeding for heat tolerance. A growth‐stage analysis of multi‐year field trials suggested that yields were reduced by sensitivity to heat during floral transition. High nighttime temperatures during this period were also associated with delayed pod set and subsequent harvest. These effects were validated in controlled environments, with additional tests revealing how nighttime heat stress generally reduces seeds per pod but can also reduce the number of pods set. Using an intra‐plant dual temperature treatment design for vegetative and reproductive organs, it was determined that effects on pollen viability and release are primary factors underlying heat stress‐associated yield losses in lima bean. Elevated nighttime temperatures did not reduce aboveground biomass, indicating the physiological basis for temperature sensitivity was not driven by a photosynthate deficit, but instead could be attributed to changes in source–sink dynamics. Still, the basis for sensitivity to heat differed among genotypes, opening new targets for a multi‐mechanistic breeding approach for heat tolerance.

Differentially expressed genes in Jojoba (Simmondsia chinensis) when subjected to water-stress

Jojoba (Simmondsia chinensis) is a desert shrub with an ability to survive in extremely arid environments. The exceptional drought tolerance of jojoba includes traits that could be useful in developing drought tolerant crop plants. This study characterized changes in gene expression in jojoba under water-stress during a controlled-environment experiment. A large number of transcripts (10,936) were identified as differentially expressed under contrasting water stress conditions. These included transcripts corresponding to antioxidant activity-related genes such as superoxide dismutase, defense response genes such as Pathogenesis-Related 4 (PR4), water molecule bio-channels such as aquaporins, cell membrane protectants such as Late Embryogenesis Abundant (LEA), and growth regulators such as 1-aminocyclopropane-1-carboxylic acid (ACC). A total of 880 novel transcripts were identified as representing possible novel genes associated with jojoba subjected to water stress. There were also many transcripts linked to transcriptional regulation that were expressed in response to water-stress in jojoba. Many male-specific transcripts corresponding to stress-related genes and transcription regulators were differentially expressed under water-stress with 1928 differentially expressed transcripts that aligned to the two Y chromosome-specific regions Y1 and Y2. The water-stress related genes detected may help explain the drought tolerance of jojoba and provide a valuable source of genes for exploitation in providing tolerance to water stress in other species.

Combined effects of drought and simulated pathogen attack on root exudation rates of tomatoes

Background and aimsFood production is threatened by direct climate change effects including drought. Indirect effects, including changes in plant-pathogen dynamics and increased susceptibility to pathogens, further exacerbate the risks. Root exudation, which plays a crucial role in plant defence against drought and pathogens, is influenced by both water stress and pathogens. However, the interactive effects of these abiotic and biotic factors are rarely studied.MethodsWe conducted a controlled environment experiment to investigate the effects of moderate drought and simulated pathogen attack (using pipecolic acid, an inducer of systemic acquired resistance) on the rates of root exudation of total organic carbon (TOC) and total nitrogen (TN) of four tomato cultivars grown in potting soil.ResultsDrought increased the exudation of TOC and TN per unit of root area, while pipecolic acid did not have any significant effect. Furthermore, there was no interaction observed between the abiotic and biotic factors. However, due to the reduction in plant and root biomass caused by drought, the total exudation per plant remained similar between control and water-limited plants. Additionally, pipecolic acid reduced the carbon-to-nitrogen ratio of exudates and increased the total exudation of TN.ConclusionThe increased exudation observed in drought-stressed plants may serve as a strategy to maintain root and rhizosphere activity despite reduced root growth. Notably, the impact of drought differed among the tested cultivars, highlighting their diverse levels of drought tolerance. This emphasises the importance of preserving a wide range of crop cultivars to ensure food security under increasing drought.

Fusarium pseudograminearum infected wheat lines vary in disease severity and gas exchange response under different watering regimes

AbstractCrown rot (CR; Fusarium pseudograminearum) is a serious disease in winter cereals. Soil type, temperature, nutrients, water availability and stubble‐borne inoculum levels play major roles in determining disease severity. This paper reports the impact of two different watering regimes on the disease severity and gas exchange of F. pseudograminearum infected bread wheat for the first time. Fusarium pseudograminearum inoculated and noninoculated genotypes with different susceptibility to CR were watered to either field capacity or a reduced watering regime in three controlled environment experiments. Rate of photosynthesis, stomatal conductance, internal CO2 concentration and transpiration rate were measured using a portable photosynthesis system, together with disease severity of leaf sheaths at 28 days after planting. Significant differences in disease severity were reported between watering treatments with reduction in CR symptoms in the partially resistant genotypes in the reduced water treatment. Photosynthesis, stomatal conductance and transpiration rate were significantly decreased across most genotypes when inoculated with F. pseudograminearum. Differences in gas exchange between inoculum treatments were more evident in plants watered to field capacity. Water availability has been reported to be one of the crucial factors for initiating F. pseudograminearum infection and subsequent development of CR disease. This research demonstrates significant variation in genotype‐related responses to the complex interactions of F. pseudograminearum infection and water treatment, with a negative impact of both limited soil water availability and CR disease severity on plant gas exchange in bread wheat.

Photosynthesis in newly developed leaves of heat-tolerant wheat acclimates to long-term nocturnal warming.

We examined photosynthetic traits of pre-existing and newly developed flag leaves of four wheat genotypes grown in controlled-environment experiments. In newly developed leaves, acclimation of the maximum rate of net CO2 assimilation (An) to warm nights (i.e. increased An) was associated with increased capacity of Rubisco carboxylation and photosynthetic electron transport, with Rubisco activation state probably contributing to increased Rubisco activity. Metabolite profiling linked acclimation of An to greater accumulation of monosaccharides and saturated fatty acids in leaves; these changes suggest roles for osmotic adjustment of leaf turgor pressure and maintenance of cell membrane integrity. By contrast, where An decreased under warm nights, the decline was related to lower stomatal conductance and rates of photosynthetic electron transport. Decreases in An occurred despite higher basal PSII thermal stability in all genotypes exposed to warm nights: Tcrit of 45-46.5 °C in non-acclimated versus 43.8-45 °C in acclimated leaves. Pre-existing leaves showed no change in An-temperature response curves, except for an elite heat-tolerant genotype. These findings illustrate the impact of night-time warming on the ability of wheat plants to photosynthesize during the day, thereby contributing to explain the impact of global warming on crop productivity.

Waterlogging may reduce chemical soil C stabilization in forested peatlands

Boreal forested peatlands are globally significant carbon (C) pools where soil water-table level largely controls decomposition rate. Here we aimed to investigate the contrarian hypothesis that waterlogging conditions do not lead to increased C stabilization in a forested peatland. We studied how waterlogging affects root and soil chemistry, fungal biomass and necromass, C pools, soil enzyme activities and fungal community composition in Pinus sylvestris rhizosphere. Samples were collected from 0–10 cm, 10–20 cm and 20–30 cm soil layers in a controlled-environment experiment with waterlogging and control treatments and in two forested peatland sites, wetter and drier. Tannin content, live fungal biomass, enzyme activities, and chemically stable SOC content and its proportion of total SOC content were generally lower in waterlogged than control treatment in the experiment, and lower in the wetter than the drier site. The proportion of ectomycorrhizal fungi was higher in the drier than the wetter site in the deepest soil layer studied, 20–30 cm. In the wetter site, chemically stable SOC content and proportion of ericoid mycorrhizal fungi were highest in topsoil that contained more roots than deeper soil layers. In conclusion, forested peatlands possess specific root-related chemical SOC stabilization mechanisms, and, consequently, waterlogging makes their SOC more vulnerable due to decreased chemical C stabilization via root-microbial interactions and lowering root production.

Integration of Sclerotinia sclerotiorum-Targeted Biofungicides Coniothyrium minitans and Bacillus amyloliquefaciens into Season-Long Soybean Pest Management Practices in Indiana

Two biofungicides, Coniothyrium minitans and Bacillus amyloliquefaciens, are commercially available and have been shown to limit or suppress Sclerotinia sclerotiorum in soybean. S. sclerotiorum is a soilborne pathogen of soybean that can cause significant yield losses under cool and wet environmental conditions. Integrated soybean pest management practices can include the application of herbicides, fungicides, and insecticides at various times during the growing season to minimize yield losses. However, limited information is available regarding how these biofungicides can be successfully incorporated into a soybean-integrated pest management program. To assess the sensitivity of C. minitans and B. amyloliquefaciens biological activity on S. sclerotiorum to pesticides commonly used in soybean-production systems, a poison plate assay and soil plate and growth chamber experiments were conducted. In the poison plate assay, C. minitans was most sensitive to the preemergence herbicide flumioxazin and the synthetic fungicides boscalid and fluazinam, whereas B. amyloliquefaciens was sensitive only to the synthetic fungicide fluazinam. In the soil plate assay, the mycoparasitic activity of C. minitans on S. sclerotiorum was sensitive to flumioxazin, metribuzin, glyphosate, picoxystrobin, and boscalid. In the controlled environment experiments, none of the pesticides tested decreased the efficacy of B. amyloliquefaciens. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .

Arbuscular mycorrhizal fungi alter rhizosphere bacterial diversity, network stability and function of lettuce in barren soil

Arbuscular mycorrhizal fungi (AMF) play an important role in plant growth and rhizosphere microbiome composition. However, how the plant-AMF-rhizosphere microbiome continuum interacts in barren soils to efficiently promote the plant's growth is still an area of little research. Here, we present the results of a controlled environment experiment to reveal the effect of AMF on the rhizosphere bacterial community of lettuce. Compared with the control group, AMF significantly increased plant biomass, mycorrhizal colonization, and affected the rhizosphere microbial community composition. AMF inoculation changed the function of the rhizosphere bacterial community, reduced the complexity of the bacterial network, and improved its stability. In addition, SEM showed that the composition and structure of rhizosphere soil bacterial community were significantly positively correlated with soil carbon, nitrogen, and phosphorus content after adding AMF. Our findings provide new information for exploring the positive effects of plant-microbe interactions.

Relative uptake of organic and inorganic nitrogen by common weed species

AbstractThe extent to which weed species vary in their ability to acquire and use different forms of nitrogen (N) (inorganic and organic) has not been investigated but could have important implications for weed survival and weed–crop competition in agroecosystems. We conducted a controlled environment experiment using stable isotopes to determine the uptake and partitioning of organic and inorganic N (amino acids, ammonium, and nitrate) by seven common weed and non-weed species. All species took up inorganic and organic N, including as intact amino acids. Concentrations of 15N derived from both ammonium and amino acids in shoot tissues were higher in large crabgrass [Digitaria sanguinalis (L.) Scop.] and barnyardgrass [Echinochloa crus-galli (L.) P. Beauv] than in common lambsquarters (Chenopodium album L.), redroot pigweed (Amaranthus retroflexus L.), and sorghum-sudangrass [Sorghum bicolor (L.) Moench × Sorghum bicolor (L.) ssp. drummondii (Nees ex Steud.) de Wet & Harlan]. In contrast, the concentration of 15N derived from nitrate was higher in wild mustard (Sinapis arvensis L.) shoots than in wild oat (Avena fatua L.) shoots. Root concentration of 15N derived from ammonium was lower in sorghum-sudangrass compared with other species, except for A. retroflexus and A. fatua, while root concentration of 15N derived from nitrate was lower in A. retroflexus compared with other species, except for C. album and S. arvensis. Discriminant analysis classified species based on their uptake and partitioning of all three labeled N forms. These results suggest that common agricultural weeds can access and use organic N and differentially take up inorganic N forms. Additional research is needed to determine whether species-specific differences in organic and inorganic N uptake influence the intensity of competition for soil N.

Shallow Incorporation of Lime and Gypsum has Limited Benefit over the Sole-surface Application of Lime for Improving Grain Yield and Water Use Efficiency in the Low Rainfall Region of Western Australia

Soil acidity is one of the major soil constraints for the grain-growing industry in Australia and around the globe. While surface liming is widely adopted, it has been proven ineffective for the timely amelioration of subsoil acidity. There is a growing interest in finding alternative approaches for the effective amelioration of subsoil acidity, especially for low-rainfall regions. In a controlled environment and a field experiment, we examined whether the combined application of lime and gypsum would be more effective than lime alone under no-till (NT) and shallow strategic tillage (ST) systems for reducing the impact of soil acidity and increasing grain yield. 
 
 The controlled environment experiment highlighted that lime increased soil pH and decreased the soil exchangeable aluminium concentration (EAC) which resulted in significantly better root growth. In the field experiment, we found that the lime plus gypsum treatment, in most cases, did not significantly affect grain yield, water use efficiency (WUE) or grain quality compared to the lime treatment alone. Lime incorporation with a shallow ST was more effective in increasing soil pH and decreasing EAC at 10–20 cm depth, compared to the surface application of lime without tillage. However, ST did not affect the grain yield and WUE of wheat in 2017 and 2018 and significantly decreased the grain yield and WUE of canola in 2019 and barley in 2020. We found that measurements of either soil pH or EAC were equivalent in their ability to explain and predict the root growth of major grain crops. The results indicate that soil pH is the simplest indicator for grain growers to measure the improvement of soil acidity with liming and its impact on root growth and crop productivity. We recommend the application of lime as the preferred amendment on acidic sands, while shallow ST should be avoided in the low rainfall region. Further studies involving deep ST are warranted.

Use of Emerging Internet of Things Technologies for Developing Infrastructure-to-Vehicle Communication Systems

Infrastructure-to-vehicle (I2V) communication is an essential part of an intelligent transportation system. Bluetooth low energy (BLE) is one of the emerging Internet of Things (IoT) technologies that can enable the exchange of data at low-energy consumption. This study evaluated the application of IoT technologies, in particular BLE beacons—I2V communication devices to support autonomous vehicle (AV) operation in a real-world setting. An AV development platform built on a Lexus RX450h car was used to perform the evaluation. The testing program included two controlled-environment experiments and two real-world validation experiments. The controlled-environment experiments were used to select the BLE beacon settings to be considered. The validation experiments were performed in two different settings: a city street and an interstate highway in the City of Cincinnati in Ohio. To this end, beacons were attached to 10 different traffic signs in a city street as well as to a side barrier of an interstate highway. The ability of the AV to detect the traffic signs and the beacons attached to the side barrier was evaluated at different speeds. The study revealed promising results and indicated that the BLE beacon technology could potentially be a reliable solution to develop I2V communication systems that can be easily deployed to modify existing transportation infrastructure.

DMC1 stabilizes crossovers at high and low temperatures during wheat meiosis.

Effective chromosome synapsis and crossover formation during meiosis are essential for fertility, especially in grain crops such as wheat. These processes function most efficiently in wheat at temperatures between 17-23 °C, although the genetic mechanisms for such temperature dependence are unknown. In a previously identified mutant of the hexaploid wheat reference variety 'Chinese Spring' lacking the long arm of chromosome 5D, exposure to low temperatures during meiosis resulted in asynapsis and crossover failure. In a second mutant (ttmei1), containing a 4 Mb deletion in chromosome 5DL, exposure to 13 °C led to similarly high levels of asynapsis and univalence. Moreover, exposure to 30 °C led to a significant, but less extreme effect on crossovers. Previously, we proposed that, of 41 genes deleted in this 4 Mb region, the major meiotic gene TaDMC1-D1 was the most likely candidate for preservation of synapsis and crossovers at low (and possibly high) temperatures. In the current study, using RNA-guided Cas9, we developed a new Chinese Spring CRISPR mutant, containing a 39 bp deletion in the 5D copy of DMC1, representing the first reported CRISPR-Cas9 targeted mutagenesis in Chinese Spring, and the first CRISPR mutant for DMC1 in wheat. In controlled environment experiments, wild-type Chinese Spring, CRISPR dmc1-D1 and backcrossed ttmei1 mutants were exposed to either high or low temperatures during the temperature-sensitive period from premeiotic interphase to early meiosis I. After 6-7 days at 13 °C, crossovers decreased by over 95% in the dmc1-D1 mutants, when compared with wild-type plants grown under the same conditions. After 24 hours at 30 °C, dmc1-D1 mutants exhibited a reduced number of crossovers and increased univalence, although these differences were less marked than at 13 °C. Similar results were obtained for ttmei1 mutants, although their scores were more variable, possibly reflecting higher levels of background mutation. These experiments confirm our previous hypothesis that DMC1-D1 is responsible for preservation of normal crossover formation at low and, to a certain extent, high temperatures. Given that reductions in crossovers have significant effects on grain yield, these results have important implications for wheat breeding, particularly in the face of climate change.

LMA or vivipary? Wheat grain can germinate precociously during grain maturation under the cool conditions used to induce late maturity alpha-amylase (LMA).

This study found that wheat (Triticum aestivum) grain can germinate precociously during the maturation phase of grain development, a phenomenon called vivipary that was associated with alpha-amylase induction. Farmers receive severe discounts for grain with low falling number (FN), an indicator that grain contains sufficiently elevated levels of the starch-digesting enzyme alpha-amylase to pose a risk to end-product quality. High grain alpha-amylase can result from: preharvest sprouting (PHS)/germination when mature wheat is rained on before harvest, or from late maturity alpha-amylase (LMA) when grain experiences cool temperatures during the soft dough stage of grain maturation (Zadoks growth stage 85). An initial LMA-induction experiment found that low FN was associated with premature visible germination, suggesting that cool and humid conditions caused vivipary. To examine whether LMA and vivipary are related, controlled environment experiments examined the conditions that induce vivipary, whether LMA could be induced without vivipary, and whether the pattern of alpha-amylase expression during vivipary better resembled PHS or LMA. Vivipary was induced in the soft to hard dough stages of grain development (Zadok's stages 83-87) both on agar and after misting of the mother plant. This premature germination was associated with elevated alpha-amylase activity. Vivipary was more strongly induced under the cooler conditions used for LMA-induction (18°C day/7.5°C night) than warmer conditions (25°C day/18°C night). Cool temperatures could induce LMA with little or no visible germination when low humidity was maintained, and susceptibility to vivipary was not always associated with LMA susceptibility in a panel of 8 varieties. Mature grain preharvest sprouting results in much higher alpha-amylase levels at the embryo-end of the kernel. In contrast, vivipary resulted in a more even distribution of alpha-amylase that was reminiscent of LMA. Vivipary can occur in susceptible varieties under moist, cool conditions, and the resulting alpha-amylase activity may result in low FN problems when a farm experiences cool, rainy conditions before the crop is mature. While there are genotypic differences in LMA and vivipary susceptibility, overlapping mechanisms are likely involved since they are similarly controlled by temperature and growth stage, and result in similar patterns of alpha-amylase expression.

Genome-wide association analysis for emergence of deeply sown rice (Oryza sativa) reveals novel aus-specific phytohormone candidate genes for adaptation to dry-direct seeding in the field.

Dry direct-seeded rice (dry-DSR) is typically sown deeply to circumvent the need for irrigation, and thus seedling emergence is a crucial trait affecting plant stand and yield. To breed elite cultivars that use less water and are climate-resilient, an understanding of the genomic regions and underlying genes that confer emergence in deeply sown dry-DSR would be highly advantageous. A combined diversity panel of 470 rice accessions (RDP1 plus aus subset of 3K RGP) was evaluated with 2.9 million single nucleotide polymorphisms (SNPs) to identify associations with dry-DSR traits in the field and component traits in a controlled-environment experiment. Using genome-wide association study (GWAS) analyses, we identified 18 unique QTLs on chromosomes 1, 2, 4, 5, 6, 7, 9, 10, and 11, explaining phenotypic variance ranging from 2.6% to 17.8%. Three QTLs, namely, qSOE-1.1, qEMERG-AUS-1.2, and qEMERG-AUS-7.1, were co-located with previously reported QTLs for mesocotyl length. Among the identified QTLs, half were associated with the emergence of aus, and six were unique to the aus genetic group. Based on functional annotation, we identified eleven compelling candidate genes that primarily regulate phytohormone pathways such as cytokinin, auxin, gibberellic acid, and jasmonic acid. Prior studies indicated that these phytohormones play a critical role in mesocotyl length under deep sowing. This study provides new insight into the importance of aus and indica as desirable genetic resources to mine favorable alleles for deep-sowing tolerance in rice. The candidate genes and marker-tagged desirable alleles identified in this study should benefit rice breeding programs directly.

Contrasting responses to climate variability generate seasonal priority effects between native and invasive forest herbs

Abstract Invasive plants are often characterized by rapid germination and precocious phenology. Theory suggests that early germination may provide invaders with a competitive advantage over slower germinating natives, but the relative contribution of rapid germination versus other intrinsic competitive traits (e.g. rapid growth, high fecundity, broad environmental tolerance) to the success of invaders is poorly understood. Depending on the relationship between germination and competition, shifts in germination phenology due to climate change may increase the dominance of invaders or buffer communities against their impacts. We investigated the link between temperature variation, germination phenology and competitive interactions with a sequence of controlled environment experiments. First, we evaluated the relationships between temperature variation and germination phenology for two herbaceous species found in North American woodlands, the non‐native Hesperis matronalis and native Cryptotaenia canadensis. We then leveraged temperature‐response differences to manipulate the relative germination phenology of these taxa and quantified the effects of their phenological differences on competition. Seeds of the invasive H. matronalis germinated rapidly, reaching 50% germination in under 10 days in all treatment combinations. C. canadensis did not reach 50% germination with less than 7 weeks of cold stratification. However, with more than 10 weeks of cold stratification and low (20/10°C) incubation temperatures, the germination phenology of C. canadensis was well‐matched to that of H. matronalis. When grown together, we found that precocious germination phenology doubled the competitive impact of H. matronalis relative to its other intrinsic competitive traits. Phenological advantage of just 2–3 days relative to C. canadensis was enough to secure competitive dominance at the seedling stage. Synthesis. This study revealed that the mechanistic link between the germination phenology and competitive success of an invasive plant can be strongly mediated by climate sensitivity differences between introduced and native species. Climate change will likely exacerbate these differences, especially in regions where warming reduces cold stratification. Our findings suggest that phenological diversity in native plant communities is an important property of invasion resistance. The relationship between environmental variation, germination dynamics and competition provides a path forward for forecasting climate change impacts on seasonal community assembly and highlights the need to incorporate phenological diversity in restorations.

Transmission Mode and Assembly of Seed Fungal Endophyte Communities in Wheat and Wheat Wild Relatives

Seeds acquire fungal endophytes either from the environment or from their progenitors. These transmission modes are central in shaping the microbiome because they affect species composition and balance. We studied fungal endophyte communities (FECs) in three plant species: bread wheat ( Triticum aestivum), wild emmer wheat ( Triticum turgidum dicoccoides), and wild barley ( Hordeum spontaneum). We conducted two experiments to test seed-to-seed transmission: (i) we compared FECs in stems and seeds collected from agricultural and natural habitats and (ii) we grew plants under greenhouse conditions to isolate the effect of vertical transmission on the plant FECs. The analysis of seed communities revealed differences in FEC composition and diversity among plant species; however, Alternaria infectoria dominated FECs in all plant species. In field-collected plants, the number of taxa in the seeds was less than half the number in stems, and close to 90% of the seed taxa were found in stems. The FECs from stems and seeds of greenhouse-grown plants were more diverse than the FECs of original seeds; they lacked a single dominant taxon, and the FECs in the new seeds had a similar richness and diversity to stem FECs, with only 40% overlap. The controlled-environment experiment confirmed vertical transmission of certain species but also showed that external infection of the seeds is the main source for specific taxa. Our results show that many taxa can reach the seeds internally, albeit in different abundance, that both infection sources affect seed FEC composition, and that external conditions affect the balance between FECs within the plant.