Continuous Cropping Of Soybean Research Articles

Rotation with Soybean Improved Weed Control and Foxtail Millet Yield

Foxtail millet is an important characteristic grain crop in northern China. However, weeds compete seriously with foxtail millet and have long been a biological factor that has plagued foxtail millet production. Rotation requires determining the species and sequence of crops, and reasonable rotation has many benefits for agriculture, including reducing the damage by weeds. In order to clarify the combination effects of foxtail millet–soybean rotation sequence and herbicide on weed control and crop yield, fixed-position experiments were designed in three growing seasons. Foxtail millet and soybean were planted following the sequence below in successive years (FFF, foxtail millet–wheat–foxtail millet–wheat–foxtail millet; SFF: soybean–wheat–foxtail millet–wheat–foxtail millet; SSF, soybean–wheat–soybean–wheat–foxtail millet; SSS, soybean–wheat–soybean–wheat–soybean), and weed density, biodiversity, weed seedbank, and crop yield were examined and analyzed. The results showed that the average weed density of SFF and SSF was reduced by 61.7% and 66.3% compared with FFF in the three years and by 16.5% and 26.6% compared with SSS, separately. Foxtail millet–soybean rotation (SFF and SSF) increased the species richness and the Margalef species richness index of the weed community and reduced the Simpson index compared with the continuous foxtail millet and the continuous soybean cropping (FFF and SSS). The weed seedbank of SFF and SSF was 45.7% and 55.8% smaller than that of FFF and increased by 92.7% and 56.7% compared with SSS, respectively. The weed density in the FFF treatment was significantly correlated with the 0–5 cm grass seedbank size, while there was no significant correlation in the other three treatments. Benefiting from the lower weed damage intensity, the yield of foxtail millet in SFF and SSF increased by 54.05% and 221.81% compared with FFF, respectively. The research results revealed that both SFF and SSF can effectively reduce the damage of weeds and help improve biodiversity. SSF has a higher weed control effect and higher foxtail millet yield than SFF. This study contributes to the understanding of crop–weed interactions in foxtail millet–soybean rotation and can be applied to areas with similar environments.

Mechanisms and Mitigation Strategies for the Occurrence of Continuous Cropping Obstacles of Legumes in China

Legumes have important nutritional and economic values, but their production faces continuous cropping obstacles that seriously affect their yield formation. In order to reduce the negative impact of the continuous cropping obstacles of legumes, it is necessary to understand the response mechanisms of legumes to continuous cropping, the causes of continuous cropping obstacles and the measures to alleviate continuous cropping obstacles. This review aimed to identify the current knowledge gap in the field of continuous cropping obstacles of legumes and provide direction and focus for future research. The continuous cropping obstacles of legumes start with soil degradation, leading to oxidative stress in the plants. This triggers the expression of plant-hormone- and signal-molecule-related genes, activating the defense system and causing continuous cropping obstacles. Although there has been progress in researching these challenges in legume crops, many questions remain. We believe that the exploration of molecular mechanisms of legume crops responding to continuous cropping, rhizosphere signal exchange and soil environment repair mechanisms after long-term continuous cropping of soybean, and the excavation of candidate genes and functional loci related to continuous cropping obstacles in legume crops are breakthroughs for proposing effective continuous cropping obstacle management strategies in the future.

Estimating the permeability of soils under different tillage practices and cropping systems: Roles of the three percolating pore radii derived from X-ray CT

Soil permeability associated with pore characteristics is a critical factor affecting water and nutrient transport in agricultural fields. However, which soil pore characteristics determine soil permeability remains inconclusive due to high heterogeneity of soil pore structure affected by soil and crop management practices. The objective of this study was to compare the pore characteristics of soils under various field management and assess the performance of different pore radii in estimating soil permeability. In this study, we utilized X-ray computed tomography (XCT) to quantify the pore characteristics of soil cores from three treatments: no-tillage under continuous maize cropping (NT-MM), no-tillage under continuous soybean cropping (NT-SS) and conventional tillage under continuous maize cropping (CT-MM). Subsequently, we calculated the permeability with pore-scale numerical simulations directly based on XCT images. Our results revealed that compared to the NT-MM treatment, the NT-SS and CT-MM treatments significantly increased soil porosity of > 200 µm pore classes (soil depths of 2–8 cm and 2–14 cm), as well as pore compactness, specific surface area, fractal dimension, and global connectivity. Among the three XCT-derived pore radii, the critical pore radius (CR) exhibited excellent performance in estimating permeability for samples from the NT-SS and CT-MM treatments, surpassing the hydraulic radius (HR) and mean pore radius of the limiting layer (MRLL). For samples from the NT-MM treatment, the CR and MRLL had similar estimation capabilities (R2 = 0.429, P = 0.110), but both were not as good as the HR (R2 = 0.539, P = 0.060). Furthermore, when estimating the permeability of all the aforementioned soil samples, the CR demonstrated the best estimation performance (R2 = 0.838, P < 0.001). In conclusion, utilizing CR as a predictor for estimating permeability in naturally structured soils is a good choice, which provides valuable insights into improving the accuracy of estimating soil permeability.

Continuous Wheat/Soybean Cropping Influences Soybean Yield and Rhizosphere Microbial Community Structure and Function

Wheat/soybean rotation is an important double-cropping system in the Huang-Huai-Hai plain of China. Continuous soybean cropping could cause soil quality deterioration and plant growth inhibition. However, the effects of continuous wheat/soybean cropping on soybean rhizosphere microbes remain largely unknown. In this study, we compared the soybean yield and rhizosphere soil microbial community between continuous winter wheat/summer soybean (W/S) with two harvests in one year and winter wheat/summer soybean-winter wheat/summer maize (W/S-W/M) with four harvests in two years. The results showed that the soybean yield in the W/S group significantly (p &lt; 0.05) declined within the first two years. The W/S-W/M showed higher soybean yield and soil fertility index than the W/S group. The sequencing results revealed that cropping rotation had a higher impact on the fungal community than the bacterial community. The W/S group showed 22.08–23.01% higher alpha diversity of the fungal community, but the alpha diversity of the bacterial group did not vary significantly in this group. The fungal community composition in the W/S and W/S-W/M groups differed significantly. In the W/S-W/M group, a higher relative abundance of plant growth-promoting fungi (e.g., Mortierella), nematophagous fungi (e.g., Plectosphaerella), and biological control fungi (e.g., Coniothyrium) was observed. In the W/S group, a higher relative abundance of lignocellulose-degrading fungi (e.g., Trechispora, Myceliophthora, Botryotrichum, and Coniochaeta) and pathogenic fungi (e.g., Pyrenochaetopsis and Cyphellophora) was observed. LEfSe analysis demonstrated that Mortierella, Myceliophthora, and Trechispora could serve as crucial biomarkers. Mortierella was positively associated with available P levels and negatively associated with NO3−-N levels and pH while Trechispora showed the opposite trend. The findings of this study could enhance the current understanding of the mechanisms associated with the continuous wheat/soybean cropping obstacles and ensure the sustainability of agricultural production.

Chitin amendments eliminate the negative impacts of continuous cropping obstacles on soil properties and microbial assemblage.

Continuous cropping of soybean leads to soil environment deterioration and soil-borne disease exacerbation, which in turn limits the sustainability of agricultural production. Chitin amendments are considered promising methods for alleviating soybean continuous cropping obstacles; however, the underlying mechanisms of soil sickness reduction remain unclear. In this study, soil amendments with pure and crude chitin at different addition dosages were employed to treat diseased soil induced by continuous cropping of soybean for five years. Chitin amendments, especially crude chitin, remarkably increased soil pH, available phosphorus (AP), potassium (AK) and nitrate nitrogen ( -N) contents, and improved soybean plant growth and soil microbial activities (FDA). Additionally, chitin application significantly enriched the relative abundances of the potential biocontrol bacteria Sphingomonas, Streptomyces, and Bacillus and the fungi Mortierella, Purpureocillium, and Metarhizium while depleted those of the potential plant pathogens Fusarium, Cylindrocarpon and Paraphoma. Moreover, chitin amendments induced looser pathogenic subnetwork structures and less pathogenic cooperation with other connected microbial taxa in the rhizosphere soils. The structural equation model (SEM) revealed that pure and crude chitin amendments promoted soybean plant growth by indirectly regulating soil pH-mediated soil microbial activities and potentially beneficial microbes, respectively. Therefore, the reduction strategies for continuous cropping obstacles by adding pure and crude chitin were distinct; pure chitin amendments showed general disease suppression, while crude chitin exhibited specific disease suppression. Overall, chitin amendments could suppress potential plant pathogens and improve soil health, thereby promoting soybean growth, which provides new prospects for cultivation practices to control soybean continuous cropping obstacles.

Archaeal communities perform an important role in maintaining microbial stability under long term continuous cropping systems

Long-term continuous cropping of soybean can generate the development of disease-suppressive soils. However, whether the changes in microbial communities, especially for archaea, contribute to controlling soil sickness and improving crop yields remains poorly understood. Here, real-time PCR and high-throughput sequencing were employed to investigate the changes in soil archaeal communities in both bulk and rhizosphere soils under four cropping systems, including the continuous cropping of soybeans for a short-term of 3 and 5 years (CC3 and CC5, respectively) and for a long-term of 13 years (CC13), as well as a soybean-maize rotation for 5 years (CR5). The results showed that CC13 and CR5 significantly increased archaeal abundance, reduced the alpha-diversity of archaeal communities, and changed soil archaeal community structures compared to CC3 and CC5. Microbial co-occurrence network analysis revealed that CC13 led to the higher resistant microbial community and lower the relative abundance of potential plant pathogens in the network compared to CC3 and CC5. Correlation analysis showed that the microbial resistance index was negatively correlated with the relative abundance of potential plant pathogens and positively correlated with soybean yields in both bulk and rhizosphere soils. Intriguingly, the random forest (RF) analysis showed that archaea contributed the most to soil microbial resistance even though they were not at the core positions of the network. Overall, structural equation models (SEMs) revealed that high resistant microbial community could directly or indirectly improved soybean yields by regulating the relative abundance of plant pathogens and the soil nutrients, suggesting that the regulation of soil microbial taxa may play an important role in maintaining agricultural productivity under continuous cropping of soybean.

Analysis of cropping pattern in black soil region of Northeast China based on geo-information Tupu.

Different cropping patterns have their own economic and ecological significance. Developing cropping patterns suitable for local conditions is needed to protect and make good use of black soils. At present, the cropping patterns and their spatial characteristics in the black soil region of Northeast China is poorly understood. Based on the crop classification data in 2017-2019, we used geo-information Tupu methods, distribution index model, and bivariate spatial autocorrelation to examine the cropping patterns. The results showed that: 1) The main cropping patterns in the black soil region of Northeast China were continuous maize cropping, continuous rice cropping, continuous soybean cropping, and maize-soybean rotation, accounting for 38.3%, 18.5%, 10.3% and 26.0%, respectively. The maize-soybean rotation included maize-soybean two-year rotation, maize-maize-soybean three-year rotation, and soybean-soybean-maize three-year rotation, accounting for 44.1%, 34.5% and 21.4% of the rotation area, respectively. 2) Various cropping patterns had obviously horizontal differentiation. For instance, continuous maize cropping had very obvious gradient differentiation characteristics in temperature and humidity, but soybean continuous cropping and maize-soybean rotation showed no gradient differentiation, while continuous rice cropping had gradient differentiation only in humidity. 3) Various cropping patterns had obviously spatial clustering characteristics. They had spatial transition characteristics from soybean continuous cropping, soybean-soybean-maize three-year rotation, maize-soybean two-year rotation, maize-maize-soybean three-year rotation, to continuous maize cropping. The cropping pattern in black soil region of Northeast China was dominated by continuous cropping. Understanding its distribution pattern can provide a basis for future spatial optimization of crop rotation.

Rhizosphere Soil Bacterial Communities of Continuous Cropping-Tolerant and Sensitive Soybean Genotypes Respond Differently to Long-Term Continuous Cropping in Mollisols.

The continuous planting of soybeans leads to soil acidification, aggravation of soil-borne diseases, reduction in soil enzyme activity, and accumulation of toxins in the soil. Microorganisms in the rhizosphere play a very important role in maintaining the sustainability of the soil ecosystem and plant health. In this study, two soybean genotypes, one bred for continuous cropping and the other not, were grown in a Mollisol in northeast China under continuous cropping for 7 and 36years in comparison with soybean–maize rotation, and microbial communities in the rhizosphere composition were assessed using high-throughput sequencing technology. The results showed that short- or long-term continuous cropping had no significant effect on the rhizosphere soil bacterial alpha diversity. Short-term continuous planting increased the number of soybean cyst nematode (Heterodera glycines), while long-term continuous planting reduced these numbers. There were less soybean cyst nematodes in the rhizosphere of the tolerant genotypes than sensitive genotypes. In addition, continuous cropping significantly increased the potential beneficial bacterial populations, such as Pseudoxanthomonas, Nitrospira, and Streptomyces compared to rotation and short-term continuous cropping, suggesting that long-term continuous cropping of soybean shifts the microbial community toward a healthy crop rotation system. Soybean genotypes that are tolerant to soybean might recruit some microorganisms that enhance the resistance of soybeans to long-term continuous cropping. Moreover, the network of the two genotypes responded differently to continuous cropping. The tolerant genotype responded positively to continuous cropping, while for the sensitive genotype, topology analyses on the instability of microbial community in the rhizosphere suggested that short periods of continuous planting can have a detrimental effect on microbial community stability, although this effect could be alleviated with increasing periods of continuous planting.

Changes in Soil Microbial Activity, Bacterial Community Composition and Function in a Long-Term Continuous Soybean Cropping System After Corn Insertion and Fertilization.

Corn-soybean rotation and fertilization are common practices improving soil fertility and crop yield. Their effects on bacterial community have been extensively studied, yet, few comprehensive studies about the microbial activity, bacterial community and functional groups in a long-term continuous soybean cropping system after corn insertion and fertilization. The effects of corn insertions (Sm: no corn insertion, CS: 3 cycles of corn-soybean rotations and CCS: 2 cycles of corn-corn-soybean rotations) with two fertilization regimes (No fertilization and NPK) on bacterial community and microbial activity were investigated in a long-term field experiment. The bacterial communities among treatments were evaluated using high-throughput sequencing then bacterial functions were predicted based on the FaProTax database. Soil respiration and extracellular enzyme activities were used to assess soil microbial activity. Soil bacterial community structure was significantly altered by corn insertions (p < 0.01) and fertilization (p < 0.01), whereas bacterial functional structure was only affected by corn insertion (p < 0.01). The activities of four enzymes (invertase, β-glucosidase, β-xylosidase, and β-D-1,4-cellobiohydrolase) involved in soil C cycling were enhanced by NPK fertilizer, and were also enhanced by corn insertions except for the invertase and β-xylosidase under NPK fertilization. NPK fertilizer significantly improved soil microbial activity except for soil metabolic quotient (qCO2) and the microbial quotient under corn insertions. Corn insertions also significantly improved soil microbial activity except for the ratio of soil induced respiration (SIR) to basal respiration (BR) under fertilization and the qCO2 was decreased by corn insertions. These activity parameters were highly correlated with the soil functional capability of aromatic compound degradation, which was the main predictors of bacterial functional structure. In general, the combination of soil microbial activity, bacterial community and corresponding functional analysis provided comprehensive insights into compositional and functional adaptations to corn insertions and fertilization.

Effects of long-term cropping regimes on SOC stability, soil microbial community and enzyme activities in the Mollisol region of Northeast China

Retaining carbon in cultivated soils is an important mechanism to mitigate climate change and to maintain the sustainability of agricultural ecosystems. Characterization of the soil microbial community was an early means to quantify the increase in soil organic carbon (SOC) content and stability under different cropping systems. However, the effects of different cropping systems on the soil microbial community and enzyme activity and the driving force for increasing the SOC content remain unclear, especially the differences between continuous maize (Zea mays L.) cropping and rotation systems containing legumes. We used a long-term field experiment (30 years) in the Mollisol region of Northeast China. The field experiment was undertaken in split-plot design comprised of four treatments: i) farmland fallow (FALL), ii) continuous soybean cropping (CSC), iii) maize-soybean rotation (MSR), iv) continuous maize cropping (CMC). Fluorometric assays and phospholipid fatty acid analysis (PLFA) were used to determine the biological characteristics of the soil. The SOC chemical composition was characterized using Cross Polarization/Magic Angle Spinning solid-state 13C-nuclear magnetic resonance (13C NMR) spectroscopy. Principal component analysis (PCA), redundancy analysis (RDA) and the partial least squares path model (PLS-PM) were used to explore the coupling mediation of these parameters further. Our results suggested that soil microbes in the four systems were not limited by C and N, but co-limited by P. But compared with the FALL system, the CMC system significantly alleviated the phosphorus limitation of the microorganisms. The CMC system also significantly increased soil nutrient content, especially SOC content (40.8%), available phosphorus (117%), available potassium (30.3%), NO3−-N (148%), and increased microbial community abundance and enzyme activities. Compared with the CMC system, the MSR system held relatively lower Gram-positive: Gram-negative ratio and higher fungi: bacteria ratio, which indicated that the soil microbial community structure is more conducive to improving the SOC stability. Meanwhile, more evidence supporting data that SOC stability was enhanced in MSR soils was provided by the 13C NMR spectra and higher-quality indices (A / AO, AI, HI and LCI). Moreover, strong correlations and RDA analysis confirmed that SOC is the main factor affecting microbial communities and enzyme activities.

Winter cover crops effects on soil organic carbon and soil physical quality in a Typical Argiudoll under continuous soybean cropping

The massive adoption of no-tillage (NT), along with the simplification of the cropping sequences has led to physical and chemical degradation of soils. To recover degraded soils, cover crops have been proposed as an alternative to increase soil organic carbon (SOC) and to improve soil physical quality (SPQ). This study aimed (i) to determine the content of SOC and its physical and chemical fractions at different layers and positions, in a soil with a soybean crop under NT with [...]

Transcriptomic analyses revealed the effect of Funneliformis mosseae on genes expression in Fusarium oxysporum.

Soybean root rot is a typical soil-borne disease that severely affects the yield of soybean. Funneliformis mosseae is one of the arbuscular mycorrhizal fungi(AMF) dominant strains in soybean continuous cropping soil. The aim of this study was to providing an experimental basis for the study of the molecular mechanism underlying the alleviation of the obstacles associated with the continuous cropping of soybean by AMF. In this study, F. mosseae was inoculated in soil planted with soybean infected with Fusarium oxysporum. The results showed that the incidence of soybean root rot was significantly reduced after inoculation with F. mosseae. In F. mosseae-treated samples, the significantly upregulated genes encoded transmembrane protein in fungal cell membrane. The significantly downregulated genes encoded some proteins, which took part in composition of essential component of fungal cell wall; hydrolyse cellulose and hemicellulose. The DEGs in each treatment were enriched in antigen processing and presentation, carbon fixation in photosynthetic organisms, glycolysis/gluconeogenesis, the MAPK signalling pathway, protein processing in the endoplasmic reticulum and RNA degradation. Inoculation with F. mosseae could in a variety of ways to promote the growth, development of soybean and improve disease resistance. Such as help fungal build barriers to the disease resistance of host plant and enhance their pathogenicity; damaging the structure of the pathogen; protect plant tissues and so on. This study provides an experimental basis for further research on the molecular mechanism underlying the alleviation of challenges associated with the continuous cropping of soybean by AMF.

Continuous cropping of soybean induced a more fluctuating fungal network and intensive pathogenic fungal interactions in a Mollisol of Northeast China

AbstractThe effects of continuous cropping and crop rotation of soybean on soil fungal communities have been intensively studied, but we know little about the network structure and interactions among the fungal species impacted by these two cropping systems in the bulk and rhizosphere soils. In this study, through the Molecular Ecological Network Analysis Pipeline (MENAP), we constructed fungal ecological networks for bulk and rhizosphere soils under continuous cropping (CC) of soybean and cropping rotation (CR) with maize. The results showed that the network structures and characteristics were largely different between the two cropping systems in both the bulk and rhizosphere soils. Compared with the CR, the CC had simplified network structures in the bulk and rhizosphere soils. In the bulk soil, compared with the CR, CC formed a more stable network, which was resistant to environmental disturbance, but opposite trend was detected in the rhizosphere soil. More cooperative interactions among fungal species were found in CC than those in CR for both bulk and rhizosphere soils. Some functional fungi annotated to potentially pathogenic modes with highest node degree were found in CC network of rhizosphere soil, which had positive interactions with potentially pathogenic fungi and negative interactions with beneficial fungi. Taken together, continuous cropping of soybean weakened fungal network structure and strengthened the positive interactions among potentially pathogenic fungi in the rhizosphere soil.

A comprehensive analysis of the response of the fungal community structure to long-term continuous cropping in three typical upland crops

Certain agricultural management practices are known to affect the soil microbial community structure; however, knowledge of the response of the fungal community structure to the long-term continuous cropping and rotation of soybean, maize and wheat in the same agroecosystem is limited. We assessed the fungal abundance, composition and diversity among soybean rotation, maize rotation and wheat rotation systems and among long-term continuous cropping systems of soybean, maize and wheat as the effect of crop types on fungal community structure. We compared these fungal parameters of same crop between long-term crop rotation and continuous cropping systems as the effect of cropping systems on fungal community structure. The fungal abundance and composition were measured by quantitative real-time PCR and Illumina MiSeq sequencing. The results revealed that long-term continuous soybean cropping increased the soil fungal abundance compared with soybean rotation, and the fungal abundance was decreased in long-term continuous maize cropping compared with maize rotation. The long-term continuous soybean cropping also exhibited increased soil fungal diversity. The variation in the fungal community structure among the three crops was greater than that between long-term continuous cropping and rotation cropping. Mortierella, Guehomyces and Alternaria were the most important contributors to the dissimilarity of the fungal communities between the continuous cropping and rotation cropping of soybean, maize and wheat. There were 11 potential pathogen and 11 potential biocontrol fungi identified, and the relative abundance of most of the potential pathogenic fungi increased during the long-term continuous cropping of all three crops. The relative abundance of most biocontrol fungi increased in long-term continuous soybean cropping but decreased in long-term continuous maize and wheat cropping. Our results indicate that the response of the soil fungal community structure to long-term continuous cropping varies based upon crop types.

Community structures of the rhizomicrobiomes of cultivated and wild soybeans in their continuous cropping

Continuous cropping of soybean often causes significant declines in yields of soybean because of the outbreaks of soil-borne fungal diseases. It has been reported that wild crops often harbour a unique microbiome to benefit the host plants. Thus, it is necessary to find the different community structures of the rhizomicrobiomes associated with cultivated and wild soybeans in their continuous cropping. In this study, we simulated monocropping of cultivated and wild soybeans under greenhouse conditions to investigate the rhizomicrobiomes of both soybeans. Results indicated that the bacterial community structure still maintained a changing trend after four continuous planting seasons, while fungal community structure showed a stable trend as indicated by the high similarity in the fungal community structure between the third and fourth planting rotations in both soybeans. In addition, by comparing the continuous cropping of the two soybeans, we found different fungal groups in their rhizospheres between the wild and cultivated soybeans following each passage. Spizellomycetaceae was more highly enriched in the rhizosphere following cultivation of the cultivated soybean, while Chaetomiaceae and Orbiliaceae were more highly enriched in the rhizosphere of wild soybean. Taken together, results of this study suggested that although there was the same trend of stabilized fungal development in the rhizospheres of both soybeans, wild soybean rhizosphere had different fungal groups compared with that of cultivated soybean following their continuous cropping. The findings of this study may provide useful information for the farmers with regard to planting soybean, especially when they consider growing soybean in monoculture.

Long-term continuous cropping of soybean is comparable to crop rotation in mediating microbial abundance, diversity and community composition

Continuous cropping of soybean causes soil degradation and soybean yield decline, but these effects could be alleviated by crop rotation or the use of long-term continuously cropped soybean systems. However, the mechanism by which biotic and abiotic factors are affected by different cropping systems remain unclear. In this study, we comparatively investigated the bacterial and fungal abundance, diversity and community compositions in the bulk and rhizospheric soils of soybean continuously cropped in the short-term for 3 and 5 years (CC3 and CC5) and in the long-term for 13 years (CC13), as well as cropping rotation with maize in alternately for 5 years (CR5) using qPCR and high-throughput sequencing methods. The results showed that soil pH, and available nutrients such as N, P and K were significantly higher in the bulk soils of CC13 and CR in contrast to CC3 and CC5. The fungi/bacteria ratio was significantly higher in the rhizospheric soils of CC3 and CC5 than that in CR5 and CC13, indicating that short-term continuously cropped soybean decreases bacterial abundance but increases fungal abundance. The bacterial and fungal community structures were significantly altered by different cropping systems, and the soil pH and C/N were the primary soil factors in shifting the bacterial and fungal community structures in the bulk soils, respectively. Bacterial and fungal co-occurrence patterns were remarkably affected by cropping systems, which showed that CC13 and CR5 harbor co-occurrence networks that are more complex than CC3 and CC5. Moreover, CC13 and CR5 increased the relative abundances of potentially beneficial bacteria Bradyrhizobium sp. and Gemmatimonas sp. and fungi Mortierella sp. and Paecilomyces sp. but decreased the relative abundances of the pathogenic fungi Fusarium sp. in contrast to CC3 and CC5, which indicated that long-term continuous cropping of soybean might have generated a possibility of the development of disease-suppressive soils.

Continuous cropping of soybean alters the bulk and rhizospheric soil fungal communities in a Mollisol of Northeast PR China

AbstractContinuous cropping of soybean causes soil degradation and decreased soybean yield in Northeast PR China. However, the mechanism underlying the effect on soil fungal communities and the relationship between these effects and cropping systems have not yet been fully elucidated. In this study, we comparatively investigated the abundance, diversity, and structures of fungal communities in the bulk and rhizospheric soils of soybean grown in two cropping systems, that is, continuous cropping (CC) of soybean and cropping rotation (CR) with maize using real‐time Polymerase Chain Reaction (PCR) and Illumina MiSeq sequencing methods. The results showed that the rhizospheric soil fungal abundance was significantly higher in CC than in CR, but the opposite trend was observed in bulk soils. CC decreased the fungal alpha diversity in both bulk and rhizospheric soils compared with CR. The fungal community compositions were distinctly different between CC and CR in both bulk and rhizospheric soils, and the composition and diversity in bulk soils were predominantly affected by the soil carbon to nitrigen (C/N) ratio. The soil fungal functional groups varied between the two cropping systems; CC increased the relative abundances of the potentially pathogenic fungi Fusarium oxysporum and Lectera longa and beneficial fungi Mortierella sp. and Paecilomyces lilacinus. In contrast, CR increased the relative abundance of Ustilago maydis, which is a pathogen that causes corn smut. Our findings showed that CC increased the abundances of plant pathogens, which is harmful to soybean growth; in contrast, the abundances of some beneficial fungi also increased, which suggested that suppressive soils might be developed after long‐term CC.

ITRAQ Proteomic Analysis of Continuously Cropped Soybean Root Inoculated With Funneliformis mosseae.

Soybean (Glycine max) is susceptible to root rot when subjected to continuous cropping, and this disease can seriously diminish the crop yield. Proteomics analyses can show the difference of protein expression in different treatment samples. Herein, isobaric tag for relative and absolute quantitation (iTRAQ) labeling and liquid chromatography-tandem mass spectrometry (LC-MS/MS) were employed for proteomic analysis of continuously cropped soybean inoculated with the arbuscular mycorrhizal fungus (AMF) Funneliformis mosseae. The AMF can reduce the incidence of root rot and increase plant height, biomass index in 1, 2, and 4 year of continuous cropping. Differential expression of proteins in soybean roots was determined following 1 year of continuous cropping. A total of 131 differentially expressed proteins (DEPs) were identified in F. mosseae-treated samples, of which 49 and 82 were up- and down-regulated, respectively. The DEPs were annotated with 117 gene ontology (GO) terms, with 48 involved in biological processes, 31 linked to molecular functions, and 39 associated with cell components. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis mapped the DEPs to 113 mainly metabolic pathways including oxidative phosphorylation, glycolysis, and amino acid metabolism. Expression of glucan 1,3-beta-glucosidase, chalcone isomerase, calcium-dependent phospholipid binding and other defense-related proteins was up-regulated by F. mosseae, suggesting inoculation promotes the growth and development of soybean and increases disease resistance. The findings provide an experimental basis for further research on the molecular mechanisms of AMF in resolving problems associated with continuous soybean cropping.

Response of Soil Fungal Community Structure to Long-Term Continuous Soybean Cropping.

Long-term continuous soybean cropping can lead to the aggravation of soil fungal disease. However, the manner in which the fungal community and functional groups of fungi are affected by continuous soybean cropping remains unclear. We investigated the fungal abundance, composition and diversity during soybean rotation (RS), 2-year (SS) and long-term (CS) continuous soybean cropping systems using quantitative real-time PCR and high-throughput sequencing. The results showed that the fungal abundance was significantly higher in CS than in SS and RS. CS altered the fungal composition. Compared with RS, SS had an increase of 29 and a decrease of 12 genera in fungal relative abundance, and CS increased 38 and decreased 17 genera. The Shannon index was significantly higher in CS and SS than in RS. The result of principal coordinate analysis (PCoA) showed that CS and SS grouped together and were clearly separated from RS on the PCoA1. A total of 32 features accounted for the differences in fungal composition across RS, SS, and CS. The relative abundance of 10 potentially pathogenic and 10 potentially beneficial fungi changed, and most of their relative abundances dramatically increased in SS and CS compared with RS. Our study indicated that CS results in selective stress on pathogenic and beneficial fungi and causes the development of the fungal community structure that is antagonistic to plant health.

Studies on the evasion of Injury due to Continuous Cropping of Soy bean

Studies on the evasion of Injury due to Continuous Cropping of Soy bean