The Carboniferous rocks in the eastern part of El Galala El Bahariya were investigated using integrated field and laboratory techniques to determine their mineralogy, rare earth elements (REEs) distribution, and structural lineament density. The succession is mainly composed of argillaceous and minor arenaceous rocks, exhibiting variations in lithology across the study area. The essential minerals of these rocks are quartz, kaolinite, and illite. The accessory minerals include microcline, gypsum, anhydrite, halite, barite, hematite, pyrite, anatase and gibbsite, in addition to, the radioactive and REEs-bearing minerals such as uranophane, xenotime, monazite, and zircon. These minerals are reported in the rocks of the study area for the first time. The types, forms, habits, and modes of occurrence of the recorded minerals indicate multiple origins: allogenic–authigenic, and primary-secondary. REEs in the rocks exhibit enriched patterns with a negative Eu anomaly, likely due to low plagioclase content or and/or Eu removal by alteration processes. The distribution of REEs is influenced by textural attributes, with finer sediments in the southern part showing higher REEs content, ascribed to the high clay content and presence of gibbsite. The preferential mobility of LREEs is evident, explaining elevated LREEs/HREEs ratios in the rocks. Utilizing remote sensing techniques, lithological units and alteration zones were determined using decorrelation stretch and band ratio methods. The structural features, identified by Laplacian filter and edge enhancement, revealed the presence of NW–SE, N–S, and NE–SW faults that structurally regulate alteration zones and REEs distribution. These alteration zones are associated with clay minerals, REEs concentrations, and high lineament structure density. Spatial distribution maps highlight higher REEs concentrations in the southern part of the study area. These findings were validated using various analytical methods, including mineralogical and geochemical investigations, main component analysis, minimum noise fraction, decorrelation stretch, and spectral reflectance studies. They provide new insights into the REEs potential of the Carboniferous rocks and heighten our understanding of REEs genesis and distribution in the region.