Contemporary Mammals Research Articles

Using historical habitat loss to predict contemporary mammal extirpations in Neotropical forests.

Understanding which species will be extirpated in the aftermath of large-scale human disturbance is critical to mitigating biodiversity loss, particularly in hyperdiverse tropical biomes. Deforestation is the strongest driver of contemporary local extinctions in tropical forests but may occur at different tempos. The 2 most extensive tropical forest biomes in South America-the Atlantic Forest and the Amazon-have experienced historically divergent pathways of habitat loss and biodiversity decay, providing a unique case study to investigate rates of local species persistence on a single continent. We quantified medium- to large-bodied mammal species persistence across these biomes to elucidate how landscape configuration affects their persistence and associated ecological functions. We collected occurrence data for 617 assemblages of medium- to large-bodied mammal species (>1kg) in the Atlantic Forest and the Amazon. Analyzing natural habitat cover based on satellite data (1985-2022), we employed descriptive statistics and generalized linear models (GLMs) to investigate ecospecies occurrence patterns in relation to habitat cover across the landscapes. The subregional erosion of Amazonian mammal assemblage diversity since the 1970s mirrors that observed since the colonial conquest of the Atlantic Forest, given that 52.8% of all Amazonian mammals are now on a similar trajectory. Four out of 5 large mammals in the Atlantic Forest were prone to extirpation, whereas 53% of Amazonian mammals were vulnerable to extirpation. Greater natural habitat cover increased the persistence likelihood of ecospecies in both biomes. These trends reflected a median local species loss 63.9% higher in the Atlantic Forest than in the Amazon, which appears to be moving toward a turning point of forest habitat loss and degradation. The contrasting trajectories of species persistence in the Amazon and Atlantic Forest domains underscore the importance of considering historical habitat loss pathways and regional biodiversity erosion in conservation strategies. By focusing on landscape configuration and identifying essential ecological functions associated with large vertebrate species, conservation planning and management practices can be better informed.

An Evolutionary Perspective of the Lipocalin Protein Family.

The protein family of Lipocalins is ubiquitously present throughout the tree of life, with the exception of the phylum Archaea. Phylogenetic relationships of chordate Lipocalins have been proposed in the past based on protein sequence similarities, but their highly divergent primary structures and a shortage of experimental annotations in genome projects have precluded a well-supported hypothesis for their evolution. In this work we propose a novel topology for the phylogenetic tree of chordate Lipocalins, inferred from multiple amino acid sequence alignments. Sixteen jawed vertebrates with fair coverage by genomic sequencing were compared. The selected species span an evolutionary range of ∼400 million years, allowing for a balanced representation of all major vertebrate clades. A consensus phylogenetic tree is proposed following a comparison of sequence-based maximum-likelihood trees and protein structure dendrograms. This new phylogeny suggests an APOD-like common ancestor in early chordates, which gave rise, via whole-genome or tandem duplications, to the six Lipocalins currently present in fish (APOD, RBP4, PTGDS, AMBP, C8G, and APOM). Further gene duplications of APOM and PTGDS resulted in the altogether 15 Lipocalins found in contemporary mammals. Insights into the functional impact of relevant amino acid residues in early diverging Lipocalins are also discussed. These results should foster the experimental exploration of novel functions alongside the identification of new members of the Lipocalin family.

Testing the effects of ecologically extinct mammals on vegetation in arid Australia: A long‐term experimental approach

AbstractThe loss of species from ecosystems can have cascading impacts on species interactions and ecosystem function. Australia has experienced the greatest loss of mammals globally in the past 200 years, but we know little of how the loss of this suite of ecosystem engineers and herbivores has affected vegetation. We used a threatened mammal reintroduction sanctuary to investigate effects of ecologically extinct mammals on plant assemblages. First, we tested the net effects of mammals using a long‐term exclusion experiment within the sanctuary. Second, we used a three‐year disturbance experiment to determine the relative roles of herbivory and physical disturbance in driving changes in plant assemblages. Third, we compared outcomes inside and outside the sanctuary to determine how effects of reintroduced mammals differed from contemporary mammal assemblages. Plant species richness was greatest in mammal exclusion plots and declined across all treatments from 2011 to 2018, probably due to drought. Plant composition changed in response to mammal exclusion, with six species increasing significantly, shrubs and myrmecochorous plants becoming more common and large‐seeded species less common. Responses to experimental disturbance were less clear. Grass and resprouters were more common, and palatable and large‐seeded plants were less common outside the sanctuary (exposed to contemporary mammal assemblage). Our study shows that reintroductions of ecologically extinct mammals have substantial impacts on plant assemblages, both through ecosystem engineering and herbivory, and these impacts differ from those of contemporary mammal faunas, suggesting that pre‐European Australian ecosystems were markedly different from contemporary ecosystems.

Environmental determinants of minimum body temperature in mammals

Physiological regulation of body temperature, set at a high level, is one of the key features of endothermic homeotherms, such as birds and mammals. However, many mammals and some birds have evolved the ability for temporal down-regulation of core body temperature. We investigated how variation in environment temperature and habitat primary productivity determine variation in daily body temperature down-regulation among mammalian species. Nearly half of the variation in minimum daily body temperature among species was explained by variation in both primary productivity and environmental temperature. Mammals expressing low minimum body temperature inhabited regions of low annual temperature with wide daily and seasonal temperature variation. Simultaneously, those regions were characterized by low productivity and low seasonality in productivity. Furthermore, regions characterized by a high level of among-year variation in environmental temperature, but not in primary productivity, were inhabited by species with low minimum body temperature, but only by those adapted to relatively humid conditions. Our results suggest that daily heterothermy can be selectively advantageous in the environmental circumstances when high energetic demands for maintaining endothermic homeothermy, physiological regulation of a high and stable body temperature, cannot be supported. The results corroborate the hypothesis that mammals that have evolved daily down-regulation of body temperature may have higher chances of surviving extinction events caused by climatic changes. Therefore, daily heterothermy adaptation in contemporary mammals represents a mechanism for surviving the ongoing global warming.

Extent, intensity and drivers of mammal defaunation: a continental-scale analysis across the Neotropics

Neotropical mammal diversity is currently threatened by several chronic human-induced pressures. We compiled 1,029 contemporary mammal assemblages surveyed across the Neotropics to quantify the continental-scale extent and intensity of defaunation and understand their determinants based on environmental covariates. We calculated a local defaunation index for all assemblages—adjusted by a false-absence ratio—which was examined using structural equation models. We propose a hunting index based on socioenvironmental co-variables that either intensify or inhibit hunting, which we used as an additional predictor of defaunation. Mammal defaunation intensity across the Neotropics on average erased 56.5% of the local source fauna, with ungulates comprising the most ubiquitous losses. The extent of defaunation is widespread, but more incipient in hitherto relatively intact major biomes that are rapidly succumbing to encroaching deforestation frontiers. Assemblage-wide mammal body mass distribution was greatly reduced from a historical 95th-percentile of ~ 14 kg to only ~ 4 kg in modern assemblages. Defaunation and depletion of large-bodied species were primarily driven by hunting pressure and remaining habitat area. Our findings can inform guidelines to design transnational conservation policies to safeguard native vertebrates, and ensure that the “empty ecosystem” syndrome will be deterred from reaching much of the New World tropics.

Artificial eyespots on cattle reduce predation by large carnivores

Eyespots evolved independently in many taxa as anti-predator signals. There remains debate regarding whether eyespots function as diversion targets, predator mimics, conspicuous startling signals, deceptive detection, or a combination. Although eye patterns and gaze modify human behaviour, anti-predator eyespots do not occur naturally in contemporary mammals. Here we show that eyespots painted on cattle rumps were associated with reduced attacks by ambush carnivores (lions and leopards). Cattle painted with eyespots were significantly more likely to survive than were cross-marked and unmarked cattle, despite all treatment groups being similarly exposed to predation risk. While higher survival of eyespot-painted cattle supports the detection hypothesis, increased survival of cross-marked cattle suggests an effect of novel and conspicuous marks more generally. To our knowledge, this is the first time eyespots have been shown to deter large mammalian predators. Applying artificial marks to high-value livestock may therefore represent a cost-effective tool to reduce livestock predation.

Projecting Mammal Distributions in Response to Future Alternative Landscapes in a Rapidly Transitioning Region

Finding balance between the needs of people and wildlife is an essential component of planning sustainable landscapes. Because mammals make up a diverse and ecologically important taxon with varying responses to human disturbance, we used representative mammal species to examine how alternative land-use policies might affect their habitats and distributions in the near future. We used wildlife detections from camera traps at 1591 locations along a large-scale urban to wild gradient in northern Virginia, to create occupancy models which determined land cover relationships and the drivers of contemporary mammal distributions. From the 15 species detected, we classified five representative species into two groups based on their responses to human development; sensitive species (American black bears and bobcats) and synanthropic species (red foxes, domestic cats, and white-tailed deer). We then used the habitat models for the representative species to predict their distributions under four future planning scenarios based on strategic versus reactive planning and high or low human population growth. The distributions of sensitive species did not shrink drastically under any scenario, whereas the distributions of synanthropic species increased in response to anthropogenic development, but the magnitude of the response varied based on the projected rate of human population growth. This is likely because most sensitive species are dependent on large, protected public lands in the region, and the majority of projected habitat losses should occur in non-protected private lands. These findings illustrate the importance of public protected lands in mitigating range loss due to land use changes, and the potential positive impact of strategic planning in further mitigating mammalian diversity loss in private lands.

The biogeography and ecology of Sri Lankan mammals point to conservation priorities

All mammals originated on the supercontinent of Pangaea in the Mesozoic era during the “Age of Reptiles.” However, the crown ancestors of contemporary mammals did not flourish until major environmental and biotic changes had occurred. An asteroid collided with earth at the end of the Cretaceous Period (the K-Pg boundary event) wiping out non-flying dinosaurs and primitive mammals. It was followed by large-scale volcanism, a spike in atmospheric oxygen and the proliferation of flowering plants. New niches became available for the ancestors of today’s mammals to fill. Evidence suggesting whether the ancestors of the Sri Lankan and Indian mammals originated on the tectonically marooned Indian plate before crashing into Asia or on the Laurasian supercontinent is inconclusive. Modern Sri Lankan mammals show their greatest affinity with those of southern India, and were more diverse in the Pleistocene when rhinoceros, hippopotamus, wild dogs, gaur and lions enriched the island’s landscapes. Native Sri Lankan land-based mammals are diversified into about 108 unique taxa (among 91 species and 53 genera), differentiated as phenotypic adaptations to sharply contrasting environments among seven major phyto-climatic zones. Endemic subspecies are distributed fairly equally across different phyto-climatic zones (n=24 to 29), except in the highlands where they are fewer (n=14) having evolved rapidly to species and genera among the insectivores and rodents whose reproductive rates are high. Conversely, greater numbers of endemic species (n=13) and genera (n=3) occur in the highlands than in the other zones (2-6 endemic species, no endemic genera). The prevalence of endemism is inversely related to body size or vagility. This suggests a greater probability of genetic exchange among distant populations of large bodied mobile mammals within Sri Lanka, as well as with Indian fauna during periods of land bridges in the Pleistocene. Most (8 of 13) endangered and critically endangered endemic mammals occur in the wet montane regions that offer the least Protected Areas (PAs). More than 85% of PAs occur in the extensive dry zone about half of which is not suited for water dependent mammals whose distributions are restricted to alluvial forests (less than 1% of PAs). Historically, the national cost of conservation has been low and therefore politically palatable. Current conservation urgently requires a major change in management policy combined with realistic investment to prevent extinctions of many endemic mammals and other unique Sri Lankan biota.

Isotopic biogeochemistry of contemporary mammals from C3 environments: Implications for palaeo-datasets

Isotopic biogeochemistry of contemporary mammals from C3 environments: Implications for palaeo-datasets

The fossil record of the sixth extinction.

Comparing the magnitude of the current biodiversity crisis with those in the fossil record is difficult without an understanding of differential preservation. Integrating data from palaeontological databases with information on IUCN status, ecology and life history characteristics of contemporary mammals, we demonstrate that only a small and biased fraction of threatened species (<9%) have a fossil record, compared with 20% of non-threatened species. We find strong taphonomic biases related to body size and geographic range. Modern species with a fossil record tend to be large and widespread and were described in the 19(th) century. The expected magnitude of the current extinction based only on species with a fossil record is about half of that of one based on all modern species; values for genera are similar. The record of ancient extinctions may be similarly biased, with many species having originated and gone extinct without leaving a tangible record.

Technical Note: Calcium and carbon stable isotope ratios as paleodietary indicators.

Calcium stable isotope ratios are hypothesized to vary as a function of trophic level. This premise raises the possibility of using calcium stable isotope ratios to study the dietary behaviors of fossil taxa and to test competing hypotheses on the adaptive origins of euprimates. To explore this concept, we measured the stable isotope composition of contemporary mammals in northern Borneo and northwestern Costa Rica, two communities with functional or phylogenetic relevance to primate origins. We found that bone collagen δ(13) C and δ(15) N values could differentiate trophic levels in each assemblage, a result that justifies the use of these systems to test the predicted inverse relationship between bioapatite δ(13) C and δ(44) Ca values. As expected, taxonomic carnivores (felids) showed a combination of high δ(13) C and low δ(44) Ca values; however, the δ(44) Ca values of other faunivores were indistinguishable from those of primary consumers. We suggest that the trophic insensitivity of most bioapatite δ(44) Ca values is attributable to the negligible calcium content of arthropod prey. Although the present results are inconclusive, the tandem analysis of δ(44) Ca and δ(13) C values in fossils continues to hold promise for informing paleodietary studies and we highlight this potential by drawing attention to the stable isotope composition of the Early Eocene primate Cantius.

Topographical distribution of phosphorylation sites of phosvitins by mass spectrometry

Phosvitin, derived from the vitellogenin II gene protein, is a highly phosphorylated protein found in egg yolk. A second hypothetical protein has been predicted based on the vitellogenin I gene, but has not been defined at the protein level. Mass spectrometric analysis was used to identify the phosphopeptide sequences and the precise sites of phosphorylation of two phosvitins, phosvitin 1 and phosvitin 2 derived from vitellogenins I and II, respectively. Samples of native phosvitin were subjected to tryptic digestion followed by mass spectrometric analysis: (i) native phosvitin peptides, (ii) after treatment with NaOH, and (iii) after chemical derivatization of P-Ser/P-Thr residues by dithiothreitol under base-catalyzed conditions. A combination of these approaches led to the identification of 68 and 35 phosphopeptides with 89 (81 P-Ser and 8 P-Thr residues) and 62 (57 P-Ser and 5 P-Thr residues) phosphorylation sites of phosvitin 1 and phosvitin 2, respectively. These data for the first time documented on a large scale the major states and sites of phosphorylation of phosvitins with a total of 151 phosphorylation sites. Importantly, the present work also provided the first direct de novo protein amino-acid sequence data for phosvitin 1 protein and evidence for the full expression of vitellogenin I gene. We have for the first time generated a large number of phosphopeptides (~100) and identified 151 phosphorylation sites of phosvitin 1 and phosvitin 2, respectively. Importantly, this study also led to the discovery of a novel phosvitin 1 and provided the first direct de novo protein amino-acid sequence data for the full expression of vitellogenin I gene. There is considerable interest in naturally occurring phosphopeptides/phosphoproteins and their application in biomedical fields and in the food industry because of their molecular characteristics and non-toxic nature, hence, our work opens new avenues to pursue such endeavors. In addition, the results provide important fundamental biologic information relevant to evolutionary developments of vertebrate animals beginning with the earliest fish, reptiles, birds and more contemporary mammals. For instance, the abundance of phosvitins with a unique degree of phosphorylation in the egg yolk of fish, reptiles, and birds suggests potential biological functions of phosvitins which are critical to the development of embryos of these distant vertebrates.

Contemporary mammal specimen preparation and management

Contemporary mammal specimen preparation and management

The Imprint of Cenozoic Migrations and Evolutionary History on the Biogeographic Gradient of Body Size in New World Mammals

Ecology, evolution, and historical events all contribute to biogeographic patterns, but studies that integrate them are scarce. Here we focus on how biotic exchanges of mammals during the Late Cenozoic have contributed to current geographic body size patterns. We explore differences in the environmental correlates and phylogenetic patterning of body size between groups of mammals participating and not participating in past biotic exchanges. Both the association of body size with environmental predictors and its phylogenetic signal were stronger for groups that immigrated into North or South America than for indigenous groups. This pattern, which held when extinct clades were included in the analyses, can be interpreted on the basis of the length of time that clades have had to diversify and occupy niche space. Moreover, we identify a role for historical events, such as Cenozoic migrations, in configuring contemporary mammal body size patterns and illustrate where these influences have been strongest for New World mammals.

Why is there discordant diversity in sengi (Mammalia: Afrotheria: Macroscelidea) taxonomy and ecology?

AbstractThe seventeen species of sengis or elephant‐shrews form a well‐defined clade of mammals endemic to Africa that occupy the extremes of terrestrial habitats, from coastal deserts to montane forests. Because of their isolation on Africa soon after the break‐up of Gondwanaland, theoretically sengis initially evolved with little competition from other placental radiations. Their life history features include myrmecophagy, saltatorial gaits, no or limited use of nests, social monogamy, small litters of precocial young and absentee maternal care of neonates. These traits together are unique to the Macroscelidea and represent a wedding of features usually associated with either small antelopes or anteaters. Combined, these features define an adaptive syndrome that presumably has been relatively immune to competition from contemporary mammals, partially due to phylogenetic inertia. Yet paradoxically, the syndrome is well suited to a wide range of terrestrial habitats, resulting in low taxonomic diversity. Because of their unusual phylogeny and low species diversity, conservation interest is high for those sengis with relatively low densities in fragmented forests.

Looking at Mammals in Kyrgyzia—Central Asia

G. G. Vorobeev, J. van der Ven 2003. Looking at Mammals in Kyrgyzia—Central Asia. PDC, Bishkek, Republic of Kyrgyzstan, 224 pp. ISBN 9967-11-184-4, price (paper) $18.00. This is a delightful, idiosyncratic bilingual (Russian and English) small-format guide to the mammals of a fascinating country—Kyrgyzstan. Nestled in the rich, troubled area of Central Asia, Kyrgyzstan is at a cultural, historical, and biological crossroads. The country covers some 200,000 square kilometers, with almost 75% higher than 2,000 m above sea level. Its mammal fauna combines elements from the Himalayas, boreal zone, desert-steppe, and India. The contemporary mammal fauna includes 71 naturally occurring species, 3 exotic commercial species, and 1 inadvertently introduced pest species. Tigers and otters have become recently extinct in the region. There are 8 endemic and subendemic species specific to the dominant mountain range—the Tien Shan. The book seems to have been a labor of love by the 2 authors, 1 Dutch and 1 Kyrgyz. The authors appear not to have been trained in mammalogy but have drawn on assistance from a variety of …

Tetraploid development in the mouse.

Spontaneous duplication of the mammalian genome occurs in approximately 1% of fertilizations. Although one or more whole genome duplications are believed to have influenced vertebrate evolution, polyploidy of contemporary mammals is generally incompatible with normal development and function of all but a few tissues. The production of tetraploid (4n) embryos has become a common experimental manipulation in the mouse. Although development of tetraploid mice has generally not been observed beyond midgestation, tetraploid:diploid (4n:2n) chimeras are widely used as a method for rescuing extraembryonic defects. The tolerance of tissues to polyploidy appears to be dependent on genetic background. Indeed, the recent discovery of a naturally tetraploid rodent species suggests that, in rare genetic backgrounds, mammalian genome duplications may be compatible with the development of viable and fertile adults. Thus, the range of developmental potentials of tetraploid embryos remains in large part unexplored. Here, we review the biological consequences and experimental utility of tetraploid mammals, in particular the mouse.

Major mammalian clades: a review under consideration of molecular and palaeontological evidence

Summary Recent advances in mammalian higher-level molecular phylogenetics have generated support for the recognition of four fundamental superordinal clades of living placental mammals. These superordinal hypotheses are used as a framework for exploring patterns and trends that have occurred during mammalian evolution to give rise to the contemporary placental mammal fauna. Potential relationships of recent mammal groups not previously referred to one of these four clades are examined here. Patterns of comparative disparity and diversity, historical and modern biogeography, and morphological and ecological convergence between and within placental superorders are discussed.

Relationships between body size and geographical range size among Australian mammals: has human impact distorted macroecological patterns?

Extinction and artificial reduction in the size of geographical ranges of many species have occurred extensively across the globe because of human activities. In particular, Australian mammals have suffered heavily in the last two hundred years, with the highest number of reported cases of mammal extinctions anywhere. In the present study, we investigated the extent to which human impact has affected contemporary macroecological patterns in Australian terrestrial mammals. After examining patterns relating to body size and range size among the contemporary mammal fauna, we removed the effects of the last two hundred years of human impact by exploring patterns in the pre‐European assemblage. This permitted us to determine whether contemporary macroecological patterns are distortions of pre‐European patterns. In contrast to the expected pattern of a significant positive relationship between body size and range size, our results showed no significant association for the complete fauna in both cross‐species and phylogenetic analyses, even when data were corrected for species extinctions and range reductions. Analyses within families and among species with the same dietary strategy revealed three significant positive relationships (Macropodidae, Peramelidae, and herbivores) and one significant negative relationship (insectivores) within the contemporary assemblage that disappeared when the pre‐European assemblage was analysed. A positive relationship also emerged in the pre‐European assemblage for the Vombatidae that was not apparent in the contemporary fauna. Thus, correcting for human impact revealed important distortions among contemporary macroecological relationships that have been brought about by human‐induced range reduction and extinction. These findings not only provide further evidence that the Australian continent presents a unique and valuable opportunity with which to test the generality of macroecological patterns, but they also have important ramifications for the analysis and interpretation of contemporary macroecological datasets.

Poissons, grenouilles, femmes et hommes: the appropriation and retention of archetypal systems for reproduction.

In contradistinction to other biological systems, the reproductive mechanisms in sexually reproducing species are unique in that their success relies upon a synchronous interaction between two separate individuals. Reproduction has become increasingly more efficient as higher forms have developed internal fertilization and gestation. Although our anthropomorphic perspective has dominated the understanding of reproductive processes, 'recent discoveries' make it clear that this reproductive efficiency has been gained by retention of previously present biological mechanisms whose origins are in the vestigial excretory tracts and ducts which are the precursors of the reproductive tract. We refer to these as 'archetypal systems'. They include the interaction between sex steroid sensitive tissues and sex steroids, the renin-angiotensin system and the macrophage/monokine response to infection. Through these mechanisms the reproductive tracts have maintained control over the microenvironment in which the reproductive processes occur. Thus, gamete development in male and female, and fertilization and early embryonic existence in the female tract prior to implantation still occur in compartments which are extracorporeal, i.e., separated from blood or subendothelial spaces, and are controlled by cellular mechanisms found in ancient excretory tracts. Since the majority of the changes between lower forms and contemporary mammals are anatomical modifications which have favoured the success of these extracorporeal events within the developing, generally land-based mammals, we should take special note of lower animals, understanding the evolutionary appropriation of mechanisms designed to furnish the suitable microenvironment from the surrounding tissues.(ABSTRACT TRUNCATED AT 250 WORDS)