Here we report the ion heating/transport characteristics of the merging startup scenario in the TS-6 spherical tokamak. In addition to the previously investigated impulsive heating process during magnetic reconnection, here we also focus on a longer time scale response of the ion temperature profile both during and after merging, including the semi-steady plasma confinement phase. During magnetic reconnection, (i) the ion temperature profile forms a poloidally asymmetric profile around the X-point in the initiation phase and (ii) radially asymmetric higher deposition is obtained at the high field side. After merging, (iii) the radially asymmetric double-peak structure is affected by parallel heat conduction and is aligned with field lines, but it does not simply become a flux function on a microsecond time scale—inboard/outboard asymmetry lasts even in the semi-steady confinement phase. (iv) Under the influence of the low-aspect-ratio configuration, there is a two to three times higher toroidal field on the high-field side on the same closed flux surface: characteristic asymmetry of inboard/outboard ion temperature has been found experimentally for the first time.