Composition Of Microbial Mats Research Articles

Differentiation of communities of macroinvertebrates and cottoid fish associated with methane seeps of different bottom landscapes of Lake Baikal

The paper presents the results of the study of communities of macroinvertebrates and cottoid fish inhabiting methane seeps of Lake Baikal. For the analysis, we used video surveillance and collection of animals carried out with the help of "Mir" deep-water submersible, as well as NIOZ-type box-corer samplers from the board of a research vessel. Posolskaya Bank and Saint Petersburg methane seeps are located in different basins (southern and middle) and at different depths (300–500 m and ~ 1400 m), characterized by the different underwater landscapes (slope of underwater upland and hills formed by gas hydrates), by the structure of gas hydrates and their depth location in sediments, as well as the composition of microbial mats and communities of microorganisms of bottom sediments. Both seeps are characterized by bubble discharge of methane gas and the formation of highly productive communities of large invertebrates and cottoid fish on seep habitats. Seep animal communities consisted of species-depleted invertebrates and fish of the surrounding deep-water benthal of the Lake. We showed the similarities and differences in the composition of the faunas of two seeps, as well as the quantitative characteristics of taxonomic groups of macroinvertebrates and cottoid fishes. Obligate species have not been revealed on the methane seep Posolskaya Bank. For the methane seep Saint Petersburg, the gastropod species Kobeltocochlea tamarae Sitnikova, Teterina et Maximova, 2021 (Caenogastropoda: Benedictiidae) was designated as an obligate species; among bottom cottoid fishes, Neocottus werestschagini (Taliev, 1953) (Cottoidei: Abyssocottidae) had possible a transitional state to obligate. We presented the data on the assimilation by seep animals of mixed photo- and chemosynthetic food with different proportions of methane-derived carbon. A hypothesis has been substantiated that deep-water seep areas could serve as refugium for the preservation of endemic fauna during the Pliocene-Pleistocene glaciations of Lake Baikal.

Cyanobacterial Mats in Calcite-Precipitating Serpentinite-Hosted Alkaline Springs of the Voltri Massif, Italy

(1) Background: Microbial communities in terrestrial, calcifying high-alkaline springs are not well understood. In this study, we investigate the structure and composition of microbial mats in ultrabasic (pH 10–12) serpentinite springs of the Voltri Massif (Italy). (2) Methods: Along with analysis of chemical and mineralogical parameters, environmental DNA was extracted and subjected to analysis of microbial communities based upon next-generation sequencing. (3) Results: Mineral precipitation and microbialite formation occurred, along with mat formation. Analysis of the serpentinite spring microbial community, based on Illumina sequencing of 16S rRNA amplicons, point to the relevance of alkaliphilic cyanobacteria, colonizing carbonate buildups. Cyanobacterial groups accounted for up to 45% of all retrieved sequences; 3–4 taxa were dominant, belonging to the filamentous groups of Leptolyngbyaceae, Oscillatoriales, and Pseudanabaenaceae. The cyanobacterial community found at these sites is clearly distinct from creek water sediment, highlighting their specific adaptation to these environments.

Bacterial Insights into the Formation of Opaline Stromatolites from the Chimalacatepec Lava Tube System, Mexico

Cave lithifying systems are excellent models to study biomineralization in the dark. The Chimalacatepec Lava Tube System in Mexico harbors diverse biospeleothems where previous studies suggest that the formation of opaline terrestrial stromatolites is related to microorganisms in contiguous mats. However, there is no information regarding their characterization and their role in mineral formation. In this study, we characterized the bacterial and archaeal composition of microbial mats and stromatolites and suggested the main processes involved in the genesis of opaline stromatolites. Our results showed that the microbial mats and stromatolites have a similar 16S rRNA gene composition, but stromatolites contain more Actinobacteria, which have been previously found in other lava tubes together with other key bacteria. Microorganisms found here belonged to groups with the potential to fix carbon and degrade organic matter. We propose that the synergic interaction of autotrophic and heterotrophic microorganisms that thrive in the dark might be inducing carbonate precipitation within the Ca-enriched extracellular polymeric substances (EPS), generating opal-A and calcite laminae. The similar 16S rRNA gene fingerprint and the presence of potential pathways that induce carbonate precipitation in opaline stromatolites and microbial mats suggest that microbial mats lithify and contribute to the stromatolite biotic genesis.

Microbial community composition and trophic role along a marked salinity gradient in Laguna Puilar, Salar de Atacama, Chile.

The geological, hydrological and microbiological features of the Salar de Atacama, the most extensive evaporitic sedimentary basin in the Atacama Desert of northern Chile, have been extensively studied. In contrast, relatively little attention has been paid to the composition and roles of microbial communities in hypersaline lakes which are a unique feature in the Salar. In the present study biochemical, chemical and molecular biological tools were used to determine the composition and roles of microbial communities in water, microbial mats and sediments along a marked salinity gradient in Laguna Puilar which is located in the "Los Flamencos" National Reserve. The bacterial communities at the sampling sites were dominated by members of the phyla Bacteroidetes, Chloroflexi, Cyanobacteria and Proteobacteria. Stable isotope and fatty acid analyses revealed marked variability in the composition of microbial mats at different sampling sites both horizontally (at different sites) and vertically (in the different layers). The Laguna Puilar was shown to be a microbially dominated ecosystem in which more than 60% of the fatty acids at particular sites are of bacterial origin. Our pioneering studies also suggest that the energy budgets of avian consumers (three flamingo species) and dominant invertebrates (amphipods and gastropods) use minerals as a source of energy and nutrients. Overall, the results of this study support the view that the Salar de Atacama is a heterogeneous and fragile ecosystem where small changes in environmental conditions may alter the balance of microbial communities with possible consequences at different trophic levels.

Compound-specific isotope analysis of cyanobacterial pure cultures and microbial mats: Effects of photorespiration?

Microbial mats are considered modern homologs of Precambrian stromatolites. The carbon isotopic compositions of organic matter and biomarker lipids provide clues to the depositional environments of ancient mat ecosystems. As the source of primary carbon fixation for over two billion years, an understanding of cyanobacterial lipid biosynthesis, associated isotopic discriminations, and the influence of physiological factors on growth and isotope expression is essential to help us compare modern microbial ecosystems to their ancient counterparts. Here, we report on the effects of photorespiration (PR) on the isotopic composition of cyanobacteria and biomarker lipids, and on potential PR effects associated with the composition of various microbial mats. The high light, high O2 and limiting CO2 conditions often present at the surface of microbial mats are known to support PR in cyanobacteria. The oxygenase function of ribulose bisphosphate carboxylase/oxygenase can result in photoexcretion of glycolate and subsequent degration by heterotrophic bacteria. We have found evidence which supports an isotopic depletion (increased apparent E) scaled to O2 level associated with growth of Phormidium luridum at low CO2 concentrations (less than 0.04%). Similar to previous studies, isotopic differences between biomass and lipid biomarkers, and between lipid classes were positively correlated with overall fractionation, and should provide a means of estimating the influence of PR on overall isotopic composition of microbial mats. Several examples of microbial mats growing in the hydrothermal waters of Yellowstone National Park and the hypersaline marine evaporation ponds at Guerrero Negro, Baja Sur Mexico will be compared with a view to PR as a possible explanation of the relatively heavy C-isotope composition of hypersaline mats.

Salinity, depth and the structure and composition of microbial mats in continental Antarctic lakes

Summary1. Lakes and ponds in the Larsemann Hills and Bølingen Islands (East‐Antarctica) were characterised by cyanobacteria‐dominated, benthic microbial mats. A 56‐lake dataset representing the limnological diversity among the more than 150 lakes and ponds in the region was developed to identify and quantify the abiotic conditions associated with cyanobacterial and diatom communities.2. Limnological diversity in the lakes of the Larsemann Hills and Bølingen Islands was associated primarily with conductivity and conductivity‐related variables (concentrations of major ions and alkalinity), and variation in lake morphometry (depth, catchment and lake area). Low concentrations of pigments, phosphate, nitrogen, DOC and TOC in the water column of most lakes suggest extremely low water column productivity and hence high water clarity, and may thus contribute to the ecological success of benthic microbial mats in this region.3. Benthic communities consisted of prostrate and sometimes finely laminated mats, flake mats, epilithic and interstitial microbial mats. Mat physiognomy and carotenoid/chlorophyll ratios were strongly related to lake depth, but not to conductivity.4. Morphological‐taxonomic analyses revealed the presence of 26 diatom morphospecies and 33 cyanobacterial morphotypes. Mats of shallow lakes (interstitial and flake mats) and those of deeper lakes (prostrate mats) were characterised by different dominant cyanobacterial morphotypes. No relationship was found between the distribution of these morphotypes and conductivity. In contrast, variation in diatom species composition was strongly related to both lake depth and conductivity. Shallow ponds were mainly characterised by aerial diatoms (e.g. Diadesmis cf. perpusilla and Hantzschia spp.). In deep lakes, communities were dominated by Psammothidium abundans and Stauroforma inermis. Lakes with conductivities higher than ±1.5 mS cm−1 became susceptible to freezing out of salts and hence pronounced conductivity fluctuations. In these lakes P. abundans and S. inermis were replaced by Amphora veneta. Stomatocysts were important only in shallow freshwater lakes.5. Ice cover influenced microbial mat structure and composition both directly by physical disturbance in shallow lakes and by influencing light availability in deeper lakes, as well as indirectly by generating conductivity increases and promoting the development of seasonal anoxia.6. The relationships between diatom species composition and conductivity, and diatom species composition and depth, were statistically significant. Transfer functions based on these data can therefore be used in paleolimnological reconstruction to infer changes in the precipitation–evaporation balance in continental Antarctic lakes.

A quantitative approach to sedimentary surface structures contoured by the interplay of microbial colonization and physical dynamics

In the tidal flats of Mellum Island (southern North Sea), biofilms and microbial mats, generated largely by cyanobacteria, colonize the sedimentary surfaces. Biostabilization effects and biomass enrichment influence erosional and depositional dynamics resulting from tidal flushing and storm surges. The overlapping of both biological and physical forces causes the development of characteristic sedimentary structures. To obtain a quantitative expression of the degree of effectiveness of microbial colonization in the formation of structures in an extended tidal area, a modification index (MOD‐I) was developed based on the following values: (i) the proportion of mat‐covered area related to a defined investigation area (IA); (ii) the degree of steepness of slope angles of raised erosional remnants (IS); and (iii) the degree of microbial levelling of a rippled sedimentary surface (IN). The MOD‐I was calculated for several defined regions within the study area, and both winter and summer situations were considered. The MOD‐I values show, first, that the lower intertidal zone is characterized by index values approaching zero. This implies that microbially induced effects in this zone are negligible, even in summer. Second, the upper intertidal zone is characterized by lower index values in winter and relatively high values in summer. This implies a predominantly seasonal control on the biofilm development in this zone. Third, in the lower supratidal zone, the index values are almost identical during both winter and summer. This implies non‐seasonal biological effects in this zone. Concomitant empirical studies on the composition of microbial mats and films suggest that the dominant microbial type influences the MOD‐I value.